Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Forward (+)

88895 .. 90413

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgactccacattcaatcttaaactcttttgaagaaacactcagttgggcttacagtgagcccaaattgatccaaaccttcagtagcccaacccaagcccaaactctatttcacctgaactgccactgtcaaaaagtgtcaccttcacattccagtgctgcctcctctctccgcttttccccgtcgattgtttttggtggcaaaaccgtcaatcaaataatggagaagatgatagctctcagatcgctctgccgttcactctcttccagatcttaccgaacggccgccgtcgccgccgccacccagcagctgccacgtcaccaacatcaccaccactccgccggcgctgctcgaaccctcttcagtttcgcttccccaaactccaagaaccagtcttccgatgaacataggtctcctctttcaacgagtttggggagtaggcggttctccagtaacgatgtgggtcattttcctgagattaaagaccctgtgctgcttaatgcttttaaggacttgatggctgcaagttgggatgatctccctaagcttgtggtccgtgaagtgaaggcagctttgtctaagaacactgatgatcagactggcaaagagcatctcatgaatgtgttgcgtgcggccgaagctgtggaggagtttggagggatggttatgcagttgaagatggatatggatgacagtgtcggtctgagtggagaggatgtgaagccgttgtcagatgagtatgtgaatgctctgaagacgatttacagtcgctacactgcctatttggattcatttgggcctgacgagacctatttgaggaagaaggtggagactgagctgggaaccaggctgatatacttgaagatgaggtgcagtggcattggttctgagtggggaaaggtcagtgttcttggaacttctggactgtcagggtcatatgttgagcaaagagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

318

Amino Acids

35.11

Weight (kDa)

8.27

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	172, 285, 294, 297, 339, 442, 632
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	2 cut(s)	282, 633
AcuI	CTGAAG	3 cut(s)	64, 346, 773
AfiI	CCNNNNNNNGG	1 cut(s)	816
AgsI	TTSAA	5 cut(s)	15, 32, 423, 676, 862
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	7 cut(s)	236, 310, 547, 572, 641, 838, 953
AluI	AGCT	7 cut(s)	236, 310, 547, 572, 641, 838, 953
Alw26I	GTCTC	3 cut(s)	417, 800, 824
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	282, 633, 797
ApeKI	GCWGC	7 cut(s)	158, 307, 310, 347, 493, 521, 569
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	553, 797
AsuHPI	GGTGA	4 cut(s)	104, 132, 311, 320
AvaII	GGWCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	746, 778
BbsI	GAAGAC	2 cut(s)	387, 761
BbvI	GCAGC	7 cut(s)	145, 297, 319, 334, 480, 508, 581
BccI	CCATC	3 cut(s)	511, 655, 673
BceAI	ACGGC	4 cut(s)	237, 272, 297, 709
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	417, 800, 824
BfoI	RGCGCY	1 cut(s)	348
BglII	AGATCT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	847
Bme18I	GGWCC	1 cut(s)	553
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	553, 797
BmiI	GGNNCC	1 cut(s)	844
BmrFI	CCNGG	1 cut(s)	847
BmsI	GCATC	1 cut(s)	619
BpiI	GAAGAC	2 cut(s)	387, 761
BpmI	CTGGAG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	543
BsaI	GGTCTC	2 cut(s)	417, 800
BsaXI	ACNNNNNCTCC	6 cut(s)	320, 350, 648, 678, 702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	4 cut(s)	153, 391, 450, 604
BseBI	CCWGG	1 cut(s)	847
BseGI	GGATG	4 cut(s)	538, 666, 694, 721
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMII	CTCAG	6 cut(s)	55, 253, 465, 695, 825, 879
BseNI	ACTGG	4 cut(s)	153, 391, 450, 604
BseRI	GAGGAG	3 cut(s)	154, 405, 662
BseX3I	CGGCCG	2 cut(s)	282, 633
BseXI	GCAGC	7 cut(s)	145, 297, 319, 334, 480, 508, 581
BseYI	CCCAGC	2 cut(s)	303, 838
BsgI	GTGCAG	1 cut(s)	892
Bsh1285I	CGRYCG	2 cut(s)	285, 636
BshFI	GGCC	3 cut(s)	284, 635, 799
BsiEI	CGRYCG	2 cut(s)	285, 636
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	3 cut(s)	417, 800, 824
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	284, 635, 799
Bso31I	GGTCTC	2 cut(s)	417, 800
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	5 cut(s)	69, 242, 269, 535, 592
BspACI	CCGC	7 cut(s)	172, 285, 294, 297, 339, 442, 632
BspANI	GGCC	3 cut(s)	284, 635, 799
BspCNI	CTCAG	6 cut(s)	54, 252, 466, 696, 826, 880
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	844
BspPI	GGATC	1 cut(s)	64
BspTNI	GGTCTC	2 cut(s)	417, 800
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	4 cut(s)	153, 391, 450, 604
BssAI	RCCGGY	1 cut(s)	341
BssMI	GATC	5 cut(s)	69, 242, 269, 535, 592
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	6 cut(s)	56, 128, 208, 695, 767, 927
Bst6I	CTCTTC	2 cut(s)	268, 365
BstC8I	GCNNGC	2 cut(s)	343, 630
BstDEI	CTNAG	9 cut(s)	41, 239, 474, 543, 579, 704, 834, 888, 954
BstENI	CCTNNNNNAGG	1 cut(s)	814
BstF5I	GGATG	4 cut(s)	538, 666, 694, 721
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	5 cut(s)	72, 245, 272, 538, 595
BstMAI	GTCTC	3 cut(s)	417, 800, 824
BstMBI	GATC	5 cut(s)	69, 242, 269, 535, 592
BstMCI	CGRYCG	2 cut(s)	285, 636
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 293, 347, 638
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	845
BstV1I	GCAGC	7 cut(s)	145, 297, 319, 334, 480, 508, 581
BstV2I	GAAGAC	2 cut(s)	387, 761
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BstZI	CGGCCG	2 cut(s)	282, 633
BsuRI	GGCC	3 cut(s)	284, 635, 799
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	4 cut(s)	538, 666, 694, 721
BtsI	GCAGTG	2 cut(s)	774, 880
BtsIMutI	CAGTG	8 cut(s)	61, 124, 160, 585, 700, 774, 880, 910
Cac8I	GCNNGC	2 cut(s)	343, 630
CaiI	CAGNNNCTG	1 cut(s)	310
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	553, 797
CviAII	CATG	1 cut(s)	616
DdeI	CTNAG	9 cut(s)	41, 239, 474, 543, 579, 704, 834, 888, 954
DpnI	GATC	5 cut(s)	71, 244, 271, 537, 594
DpnII	GATC	5 cut(s)	69, 242, 269, 535, 592
EaeI	YGGCCR	2 cut(s)	282, 633
EagI	CGGCCG	2 cut(s)	282, 633
Eam1104I	CTCTTC	2 cut(s)	268, 365
EarI	CTCTTC	2 cut(s)	268, 365
EciI	GGCGGA	1 cut(s)	328
EclXI	CGGCCG	2 cut(s)	282, 633
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	417, 800
Eco47I	GGWCC	1 cut(s)	553
Eco52I	CGGCCG	2 cut(s)	282, 633
Eco57I	CTGAAG	3 cut(s)	64, 346, 773
EcoNI	CCTNNNNNAGG	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	845
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	1 cut(s)	619
FaiI	YATR	8 cut(s)	408, 617, 668, 686, 741, 856, 937, 939
FatI	CATG	1 cut(s)	615
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	4 cut(s)	545, 673, 701, 728
FriOI	GRGCYC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	346
GsaI	CCCAGC	2 cut(s)	307, 842
GsuI	CTGGAG	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	284, 635, 799
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	619
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	4, 788
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	4 cut(s)	104, 132, 311, 320
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	7 cut(s)	242, 400, 597, 705, 733, 753, 889
Hpy188III	TCNNGA	4 cut(s)	267, 473, 616, 921
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	2 cut(s)	187, 293
HpyAV	CCTTC	4 cut(s)	88, 153, 559, 817
HpyCH4III	ACNGT	6 cut(s)	56, 128, 208, 695, 767, 927
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	524, 670, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 293, 347, 638
HpyF3I	CTNAG	9 cut(s)	41, 239, 474, 543, 579, 704, 834, 888, 954
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	619
HspAI	GCGC	1 cut(s)	345
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	69, 242, 269, 535, 592
Lsp1109I	GCAGC	7 cut(s)	145, 297, 319, 334, 480, 508, 581
LweI	GCATC	1 cut(s)	619
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	138, 317, 452
MalI	GATC	5 cut(s)	71, 244, 271, 537, 594
MboI	GATC	5 cut(s)	69, 242, 269, 535, 592
MboII	GAAGA	9 cut(s)	44, 238, 255, 352, 387, 688, 766, 832, 874
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	9 cut(s)	172, 175, 368, 426, 640, 650, 706, 810, 861
MreI	CGCCGGCG	1 cut(s)	341
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	4 cut(s)	20, 480, 498, 507
MslI	CAYNNNNRTG	2 cut(s)	153, 620
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	847
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	4 cut(s)	290, 293, 347, 638
NaeI	GCCGGC	1 cut(s)	343
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	5 cut(s)	69, 242, 269, 535, 592
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	1 cut(s)	844
NmuCI	GTSAC	2 cut(s)	138, 317
PagI	TCATGA	1 cut(s)	615
PctI	GAATGC	1 cut(s)	751
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	788
PflFI	GACNNNGTC	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	845
PspFI	CCCAGC	2 cut(s)	303, 838
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	844
PspPI	GGNCC	2 cut(s)	553, 797
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	310
RseI	CAYNNNNRTG	2 cut(s)	153, 620
SaqAI	TTAA	4 cut(s)	20, 480, 498, 507
Sau3AI	GATC	5 cut(s)	69, 242, 269, 535, 592
Sau96I	GGNCC	2 cut(s)	553, 797
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	619
SgrAI	CRCCGGYG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	153, 620
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	7 cut(s)	172, 285, 294, 297, 339, 442, 632
StyD4I	CCNGG	1 cut(s)	845
TaaI	ACNGT	6 cut(s)	56, 128, 208, 695, 767, 927
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	185, 352
TaqII	GACCGA	1 cut(s)	689
TasI	AATT	1 cut(s)	65
TauI	GCSGC	4 cut(s)	287, 296, 299, 635
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	4 cut(s)	20, 480, 498, 507
Tru9I	TTAA	4 cut(s)	20, 480, 498, 507
TscAI	CASTG	8 cut(s)	61, 131, 160, 592, 700, 781, 880, 910
TseFI	GTSAC	2 cut(s)	138, 317
TseI	GCWGC	7 cut(s)	158, 307, 310, 347, 493, 521, 569
Tsp45I	GTSAC	2 cut(s)	138, 317
TspDTI	ATGAA	3 cut(s)	417, 632, 780
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	8 cut(s)	61, 131, 160, 592, 700, 781, 880, 910
Tth111I	GACNNNGTC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.