Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006651

Physical Location & Seq

Genomic Coordinates Forward (+)

17466535 .. 17473421

Gene Structure 6887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGGCCAAGTCAAGCGCCGACGATGAAGAGCTTCGGCGAGCTTGCGAGGCGGCAATCGAAGGCACCAAGCAATCGATCGTCATGTCGATACGTGTGGCCAAGAGTCGCGGTGTTTGGGGCAAGTCTGGAAAATTGGGTCGACAAATGGCTAAACCCAGAGTTCTCGCTCTTTCCGTCAAATCGAAGGGTCCACGAAAGAAAGCAATTCTTCGAGTCATGAAGTATTCAAGTGGAGGAGTTCTGGAGCCTGCTAAAATGTATGACCTCAAGCATCTGTCAAAGGTGGAAGTCATAACTAGTGACCCAAGTGGATGCACATTTACCCTCGGGTTTGATAATCTCAGGAGTCAAAGTGTTGCTCCTCCACAGTGGACCATGCGCAACACTGATGACAGGAACCGACTTTTAGTTTGCATATTGAACATATGCAAAGACGTATTAGGCCGCCTTCCAAAAGTTGTTGGTATAGATATTGTCGAGATGGCCCTTTGGGCAAAGGATAACACTCCAGTAGTCACTACTCAAAGAAGTACAGAAGATGGGGAGCCTGTTGCTGAATCTGTAACAGAAAGCGCCTTGAAAGTTACTGTTGAGAAAGAACTAGTCTCTCAGGCCGAGGAAGAGGATATGGAGGCTCTCTTGGGAACTTATGTGATTGGCATTGGTGAAGCTGAGGCATTTTCTGAAAGGCTGAAACGAGAGCTTCAGGCGCTTGAAGCGGCAAATGTACATGCAATTCTGGAAAGCGAACCATTAGTAGATGAGGTTTTGAATGGACTAGAGGCAGCAACAAATATCGTTGATGACATGGATGAATGGTTAGGAATATTCAACATTAAACTTAGACACATGAGGGAAGACATTGAATCGATAGAAATTCGAAACAACAAGTTAGAGATGCAGTCTGTAAACAATAAAGCTCTCATTGAGGAACTTGATAAAGTTATTGAGAGACTGCGTGTGCCTTCTGAGTATGCAGCATCCCTAACAGGAGGCTCATTTGATGAAGCAGACATGCTTCAGAATATTGAGGCTTGCGAGTGGTTAGCCAAAGCTTTAAGGGGTCTTGAAGTGCCCAACTTAGACCCGATCTATGCTAATATGCGAGCTGTAAAAGAGAAACGAGCAGAACTAGAAAAATTAAAAGCTACTTTTGTAAGGAGAGCTTCAGAGTTCTTGAGAGACTACTTTGCTAGTCTGGTAGATTTCAAGTTCAGTGACAAAAGCTACTTTTCTCAGAGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGGGTCTTAATAAGAATTGTTTGGGACCATTGAGAAAAGCATACTGCAGCTCCCTGAACTTGCTCCTTCGTCGAGAGGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACACTGACACCTCTGCAGTGTCAGATGCTTATGCCAAGATGTTAACAATATTCATCCCGCTTCTTGTAGATGAGAGTTCCTTTTTTGCGCACTTCATGTGCTTTGAGGTACCTGCTCTTGCTCCTCCTGGAGGTGCTGGCAATGATAAGAAAAGCCAGTCCAACAATGACGATGGTAATGATAATGATGATTTGGGGATCATGGACATTGATGAAGCTGACAAGAAACCTGGTAAAAACTCTCCAGACCTGACGGCATTGAATGAATCTCTTCAAGATTTACTTGATGGTATTCAGGAGGATTTCTATGCTGTTGTTGACTGGGCATATAAAATAGACCCCCTACGGTCTATATCAATGCATGGTATAACCGAACGTTATCTATCTGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAATTTCTATGCAATTCAGCCATTTTGTGGATGAAGCTTGTCACCAAATTGAAAAAAATGAACGTAATGTAAGACAGATGGGTGTCTTGCCATATATTCCAAGATTTGCAGCACTTGCTACTCGTATGGAACAGTACATACAAGGGCAATCTAGAAATTTGGTTGATCAGGCGTACACAAAATTTGTGAGCATACTGTTTGTGACCCTCGAGAAAATTGCCCAACAAGATCCTAAATATGCAGATATTCTCCTTTTGGAAAACTATGCTGCTTTTCAAACTTGCCTGTTTGACCTGGCTAATGTTGTGCCGACTTTAGCCAAGTTCTATGACCAGGCAATGGAAGCATATGAACAAGCTTGTACGCGCCACATTAGCATGATAATTTACTATCAATTCGAAAGACTTTTCCTGTTTGATAAAAAGATTAAGGATCTCATGTATACTATCACCCCTGAAGAGATACCATTCCAGCTTGGTTTATCAAAAGTGGAACTCCGGAAGATGTTAAAATCAAGCCTGTCAGGGGTGGACAAATCGATTGCAGCAATGTATAAAAAGTTGCAGAAGAATTTAGCATCAGAGGAGTTGCTACCATCGTTGTGGGATAAATGCAAGAAGGAGTTTCTGGACAAGTACGAGAGCTTCGTGCAGCTCGTAGCCAAAGTTTACCCGAGTGAAAACGTTCCTGGGGTAACTGAAATGAGAGGACTTCTGGCTTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0008289 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016192 GO:0017016 GO:0017048 GO:0017049 GO:0019899 GO:0022414 GO:0031267 GO:0031503 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034629 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048193 GO:0048544 GO:0051020 GO:0051179 GO:0051234 GO:0051601 GO:0051641 GO:0051704 GO:0060321 GO:0070062 GO:0070727 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1901981 GO:1902936 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec3-PIP2_bind Sec3_C

Protein Analysis

887

Amino Acids

99.92

Weight (kDa)

5.68

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec3-PIP2_bind	PF15277	49 - 144	2.4e-16	Exocyst complex component SEC3 N-terminal PIP2 binding PH
Sec3_CC	PF09763	224 - 353	7.3e-27	Exocyst complex component Sec3, coiled-coil
Vps52_CC	PF04129	253 - 393	5e-10	Vps52/Sac2 family, coiled-coil
Sec3_C-term	PF20654	582 - 870	4.6e-26	Exocyst complex component Sec3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47550 AT1G47550 AT1G47560
fragaria_vesca	FvH4_2g40450 FvH4_2g40450 FvH4_2g40450 FvH4_2g40450
malus_domestica	MD00G1038900.v1.1 MD08G1038000.v1.1
prunus_persica	Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1
pyrus_communis	pycom08g03010 pycom15g02940
rosa_chinensis	RchiOBHm_Chr6g0300281
rosa_laevigata	RLG00000011351
rosa_multiflora	Rmu_co8431689.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167930
rosa_rugosa	Rorug06G0294700
rosa_samantha	Rh6AG407200 Rh6BG414800 Rh6CG422100 Rh6DG407800 Rh7BG034300
rosa_wichuraiana	Rw6G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	380, 1581
Acc36I	ACCTGC	1 cut(s)	1612
Acc65I	GGTACC	1 cut(s)	1600
AccB1I	GGYRCC	2 cut(s)	62, 1600
AccB7I	CCANNNNNTGG	2 cut(s)	1963, 2275
AccI	GTMKAC	2 cut(s)	139, 2378
AccII	CGCG	3 cut(s)	108, 1409, 2302
AccIII	TCCGGA	1 cut(s)	2433
AciI	CCGC	6 cut(s)	50, 108, 445, 719, 1276, 1550
AclI	AACGTT	2 cut(s)	1867, 2619
AclWI	GGATC	4 cut(s)	1474, 1697, 2159, 2376
AcoI	YGGCCR	2 cut(s)	3, 96
AcsI	RAATTY	6 cut(s)	876, 1403, 1938, 2092, 2117, 2506
AcuI	CTGAAG	5 cut(s)	689, 1004, 1152, 1271, 2412
AfaI	GTAC	8 cut(s)	532, 729, 1280, 1602, 2072, 2111, 2299, 2573
AfiI	CCNNNNNNNGG	4 cut(s)	1622, 1963, 2275, 2461
AflIII	ACRYGT	1 cut(s)	91
AhlI	ACTAGT	2 cut(s)	296, 601
AjnI	CCWGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
Alw26I	GTCTC	3 cut(s)	610, 946, 1176
AlwI	GGATC	4 cut(s)	1474, 1697, 2159, 2376
Ama87I	CYCGRG	3 cut(s)	326, 2144, 2608
Aor13HI	TCCGGA	1 cut(s)	2433
AoxI	GGCC	6 cut(s)	3, 96, 442, 483, 612, 1256
ApeKI	GCWGC	9 cut(s)	785, 977, 1246, 1365, 1895, 2045, 2204, 2480, 2587
ApoI	RAATTY	6 cut(s)	876, 1403, 1938, 2092, 2117, 2506
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
Asp700I	GAANNNNTTC	3 cut(s)	30, 1761, 2619
Asp718I	GGTACC	1 cut(s)	1600
AspLEI	GCGC	6 cut(s)	17, 381, 575, 712, 1582, 2304
AspS9I	GGNCC	4 cut(s)	188, 372, 484, 1343
AsuHPI	GGTGA	3 cut(s)	677, 1970, 2377
AsuII	TTCGAA	2 cut(s)	880, 2334
AvaI	CYCGRG	3 cut(s)	326, 2144, 2608
AvaII	GGWCC	3 cut(s)	188, 372, 1343
BaeGI	GKGCMC	1 cut(s)	1077
BaeI	ACNNNNGTAYC	2 cut(s)	1419, 1452
BalI	TGGCCA	2 cut(s)	5, 98
BanI	GGYRCC	2 cut(s)	62, 1600
BarI	GAAGNNNNNNTAC	2 cut(s)	2564, 2596
BauI	CACGAG	1 cut(s)	1398
BbsI	GAAGAC	1 cut(s)	864
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	9 cut(s)	797, 989, 1258, 1377, 1882, 2057, 2191, 2492, 2599
BccI	CCATC	6 cut(s)	475, 533, 1658, 1772, 2008, 2539
BceAI	ACGGC	1 cut(s)	1761
BcgI	CGANNNNNNTGC	2 cut(s)	2135, 2169
BciT130I	CCWGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
BclI	TGATCA	1 cut(s)	2101
BcoDI	GTCTC	3 cut(s)	610, 946, 1176
BcuI	ACTAGT	2 cut(s)	296, 601
BfaI	CTAG	8 cut(s)	297, 602, 779, 1133, 1194, 1460, 1479, 2088
BfmI	CTRYAG	3 cut(s)	1363, 1506, 1896
BfoI	RGCGCY	3 cut(s)	18, 576, 713
BfuAI	ACCTGC	1 cut(s)	1612
BglI	GCCNNNNNGGC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	1924
Bme1390I	CCNGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
Bme18I	GGWCC	3 cut(s)	188, 372, 1343
BmeT110I	CYCGRG	3 cut(s)	326, 2144, 2608
BmgT120I	GGNCC	4 cut(s)	188, 372, 484, 1343
BmiI	GGNNCC	7 cut(s)	64, 189, 246, 398, 546, 1344, 1602
BmrFI	CCNGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
BmrI	ACTGGG	1 cut(s)	1822
BmsI	GCATC	7 cut(s)	280, 302, 888, 989, 1507, 1882, 2522
BmuI	ACTGGG	1 cut(s)	1822
BpiI	GAAGAC	1 cut(s)	864
BpmI	CTGGAG	5 cut(s)	263, 492, 1641, 1719, 1949
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	2 cut(s)	880, 2334
BpuEI	CTTGAG	2 cut(s)	251, 1198
Bsa29I	ATCGAT	3 cut(s)	74, 869, 2474
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	325, 615, 2624
BsaWI	WCCGGW	1 cut(s)	2433
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 1352, 1382
Bsc4I	CCNNNNNNNGG	4 cut(s)	1622, 1963, 2275, 2461
Bse1I	ACTGG	3 cut(s)	509, 1648, 1817
Bse3DI	GCAATG	3 cut(s)	1639, 2280, 2490
BseAI	TCCGGA	1 cut(s)	2433
BseBI	CCWGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
BseCI	ATCGAT	3 cut(s)	74, 869, 2474
BseDI	CCNNGG	3 cut(s)	325, 615, 2624
BseGI	GGATG	5 cut(s)	317, 817, 980, 1545, 1972
BseLI	CCNNNNNNNGG	4 cut(s)	1622, 1963, 2275, 2461
BseMI	GCAATG	3 cut(s)	1639, 2280, 2490
BseMII	CTCAG	5 cut(s)	355, 623, 663, 960, 1250
BseNI	ACTGG	3 cut(s)	509, 1648, 1817
BseRI	GAGGAG	4 cut(s)	249, 351, 1605, 2534
BseSI	GKGCMC	1 cut(s)	1077
BseXI	GCAGC	9 cut(s)	797, 989, 1258, 1377, 1882, 2057, 2191, 2492, 2599
BsgI	GTGCAG	1 cut(s)	2606
Bsh1236I	CGCG	3 cut(s)	108, 1409, 2302
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	6 cut(s)	5, 98, 444, 485, 614, 1258
BshNI	GGYRCC	2 cut(s)	62, 1600
BshVI	ATCGAT	3 cut(s)	74, 869, 2474
BsiEI	CGRYCG	1 cut(s)	78
BsiHKCI	CYCGRG	3 cut(s)	326, 2144, 2608
BsiSI	CCGG	1 cut(s)	2434
BslFI	GGGAC	1 cut(s)	1356
BslI	CCNNNNNNNGG	4 cut(s)	1622, 1963, 2275, 2461
BsmAI	GTCTC	3 cut(s)	610, 946, 1176
BsmFI	GGGAC	1 cut(s)	1356
BsmI	GAATGC	1 cut(s)	1492
BsnI	GGCC	6 cut(s)	5, 98, 444, 485, 614, 1258
BsoBI	CYCGRG	3 cut(s)	326, 2144, 2608
Bsp119I	TTCGAA	2 cut(s)	880, 2334
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp13I	TCCGGA	1 cut(s)	2433
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
Bsp68I	TCGCGA	1 cut(s)	1409
BspACI	CCGC	6 cut(s)	50, 108, 445, 719, 1276, 1550
BspANI	GGCC	6 cut(s)	5, 98, 444, 485, 614, 1258
BspCNI	CTCAG	5 cut(s)	354, 622, 664, 961, 1249
BspDI	ATCGAT	3 cut(s)	74, 869, 2474
BspEI	TCCGGA	1 cut(s)	2433
BspFNI	CGCG	3 cut(s)	108, 1409, 2302
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	7 cut(s)	64, 189, 246, 398, 546, 1344, 1602
BspMAI	CTGCAG	3 cut(s)	1367, 1510, 1900
BspMI	ACCTGC	1 cut(s)	1612
BspPI	GGATC	4 cut(s)	1474, 1697, 2159, 2376
BspQI	GCTCTTC	1 cut(s)	21
BspT104I	TTCGAA	2 cut(s)	880, 2334
BspT107I	GGYRCC	2 cut(s)	62, 1600
BsrDI	GCAATG	3 cut(s)	1639, 2280, 2490
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	509, 1648, 1817
BssECI	CCNNGG	3 cut(s)	325, 615, 2624
BssMI	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
BssNAI	GTATAC	1 cut(s)	2379
BssSI	CACGAG	1 cut(s)	1398
Bst1107I	GTATAC	1 cut(s)	2379
Bst2BI	CACGAG	1 cut(s)	1398
Bst2UI	CCWGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
Bst4CI	ACNGT	6 cut(s)	369, 589, 1453, 1839, 2070, 2133
Bst6I	CTCTTC	5 cut(s)	21, 615, 1247, 1767, 2388
BstAPI	GCANNNNNTGC	1 cut(s)	2051
BstAUI	TGTACA	1 cut(s)	727
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	2 cut(s)	880, 2334
BstC8I	GCNNGC	7 cut(s)	39, 43, 249, 1036, 1107, 1426, 1630
BstDEI	CTNAG	7 cut(s)	341, 609, 672, 842, 969, 1081, 1236
BstENI	CCTNNNNNAGG	1 cut(s)	1620
BstF5I	GGATG	5 cut(s)	317, 817, 980, 1545, 1972
BstFNI	CGCG	3 cut(s)	108, 1409, 2302
BstH2I	RGCGCY	3 cut(s)	18, 576, 713
BstHHI	GCGC	6 cut(s)	17, 381, 575, 712, 1582, 2304
BstKTI	GATC	8 cut(s)	78, 1092, 1469, 1692, 1927, 2104, 2167, 2371
BstMAI	GTCTC	3 cut(s)	610, 946, 1176
BstMBI	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 491, 709, 716, 1255, 1895, 2051, 2279, 2310
BstNI	CCWGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
BstNSI	RCATGY	2 cut(s)	734, 1018
BstSCI	CCNGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
BstSFI	CTRYAG	3 cut(s)	1363, 1506, 1896
BstSLI	GKGCMC	1 cut(s)	1077
BstUI	CGCG	3 cut(s)	108, 1409, 2302
BstV1I	GCAGC	9 cut(s)	797, 989, 1258, 1377, 1882, 2057, 2191, 2492, 2599
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	4 cut(s)	1466, 1924, 2164, 2368
BstXI	CCANNNNNNTGG	1 cut(s)	2538
BstYI	RGATCY	4 cut(s)	1466, 1924, 2164, 2368
BstZ17I	GTATAC	1 cut(s)	2379
Bsu15I	ATCGAT	3 cut(s)	74, 869, 2474
BsuRI	GGCC	6 cut(s)	5, 98, 444, 485, 614, 1258
BsuTUI	ATCGAT	3 cut(s)	74, 869, 2474
BtsCI	GGATG	5 cut(s)	317, 817, 980, 1545, 1972
BtsI	GCAGTG	1 cut(s)	1515
BtsIMutI	CAGTG	5 cut(s)	374, 384, 1222, 1494, 1515
BtuMI	TCGCGA	1 cut(s)	1409
BveI	ACCTGC	1 cut(s)	1612
Cac8I	GCNNGC	7 cut(s)	39, 43, 249, 1036, 1107, 1426, 1630
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	6 cut(s)	17, 381, 575, 712, 1582, 2304
Cfr13I	GGNCC	4 cut(s)	188, 372, 484, 1343
ClaI	ATCGAT	3 cut(s)	74, 869, 2474
CsiI	ACCWGGT	1 cut(s)	1720
Csp6I	GTAC	8 cut(s)	531, 728, 1279, 1601, 2071, 2110, 2298, 2572
CviQI	GTAC	8 cut(s)	531, 728, 1279, 1601, 2071, 2110, 2298, 2572
DdeI	CTNAG	7 cut(s)	341, 609, 672, 842, 969, 1081, 1236
DpnI	GATC	8 cut(s)	77, 1091, 1468, 1691, 1926, 2103, 2166, 2370
DpnII	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
DraI	TTTAAA	1 cut(s)	1317
EaeI	YGGCCR	2 cut(s)	3, 96
Eam1104I	CTCTTC	5 cut(s)	21, 615, 1247, 1767, 2388
EarI	CTCTTC	5 cut(s)	21, 615, 1247, 1767, 2388
Eco147I	AGGCCT	1 cut(s)	1258
Eco47I	GGWCC	3 cut(s)	188, 372, 1343
Eco57I	CTGAAG	5 cut(s)	689, 1004, 1152, 1271, 2412
Eco88I	CYCGRG	3 cut(s)	326, 2144, 2608
EcoNI	CCTNNNNNAGG	1 cut(s)	1620
EcoRI	GAATTC	1 cut(s)	1403
EcoRII	CCWGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
EcoT22I	ATGCAT	1 cut(s)	1854
FalI	AAGNNNNNCTT	6 cut(s)	192, 224, 1150, 1182, 1758, 1790
FaqI	GGGAC	1 cut(s)	1356
FauI	CCCGC	1 cut(s)	1557
FauNDI	CATATG	3 cut(s)	425, 1294, 2284
FbaI	TGATCA	1 cut(s)	2101
FblI	GTMKAC	2 cut(s)	139, 2378
FokI	GGATG	5 cut(s)	324, 824, 967, 1532, 1979
FspBI	CTAG	8 cut(s)	297, 602, 779, 1133, 1194, 1460, 1479, 2088
FspI	TGCGCA	2 cut(s)	380, 1581
GlaI	GCGC	6 cut(s)	16, 380, 574, 711, 1581, 2303
GsuI	CTGGAG	5 cut(s)	263, 492, 1641, 1719, 1949
HaeII	RGCGCY	3 cut(s)	18, 576, 713
HaeIII	GGCC	6 cut(s)	5, 98, 444, 485, 614, 1258
HapII	CCGG	1 cut(s)	2434
HhaI	GCGC	6 cut(s)	17, 381, 575, 712, 1582, 2304
Hin6I	GCGC	6 cut(s)	15, 379, 573, 710, 1580, 2302
HinP1I	GCGC	6 cut(s)	15, 379, 573, 710, 1580, 2302
HincII	GTYRAC	3 cut(s)	140, 1536, 1810
HindII	GTYRAC	3 cut(s)	140, 1536, 1810
HindIII	AAGCTT	3 cut(s)	1053, 1971, 2292
HinfI	GANTC	7 cut(s)	103, 213, 346, 557, 866, 1757, 1931
HpaI	GTTAAC	1 cut(s)	1536
HpaII	CCGG	1 cut(s)	2434
HphI	GGTGA	3 cut(s)	677, 1970, 2377
Hpy188I	TCNGA	9 cut(s)	685, 970, 1023, 1171, 1239, 1485, 1516, 1884, 2518
Hpy99I	CGWCG	2 cut(s)	23, 1392
HpyAV	CCTTC	8 cut(s)	53, 178, 458, 975, 1394, 1405, 1457, 2548
HpyCH4III	ACNGT	6 cut(s)	369, 589, 1453, 1839, 2070, 2133
HpyCH4IV	ACGT	5 cut(s)	91, 435, 1867, 1999, 2619
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 491, 709, 716, 1255, 1895, 2051, 2279, 2310
HpyF3I	CTNAG	7 cut(s)	341, 609, 672, 842, 969, 1081, 1236
HpySE526I	ACGT	5 cut(s)	91, 435, 1867, 1999, 2619
HspAI	GCGC	6 cut(s)	15, 379, 573, 710, 1580, 2302
Kpn2I	TCCGGA	1 cut(s)	2433
KpnI	GGTACC	1 cut(s)	1604
Ksp22I	TGATCA	1 cut(s)	2101
KspAI	GTTAAC	1 cut(s)	1536
Kzo9I	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	7 cut(s)	244, 364, 544, 1373, 1386, 1414, 1618
Lsp1109I	GCAGC	9 cut(s)	797, 989, 1258, 1377, 1882, 2057, 2191, 2492, 2599
LweI	GCATC	7 cut(s)	280, 302, 888, 989, 1507, 1882, 2522
MabI	ACCWGGT	1 cut(s)	1720
MaeI	CTAG	8 cut(s)	297, 602, 779, 1133, 1194, 1460, 1479, 2088
MaeII	ACGT	5 cut(s)	91, 435, 1867, 1999, 2619
MaeIII	GTNAC	8 cut(s)	299, 514, 562, 583, 1217, 1976, 2137, 2629
MalI	GATC	8 cut(s)	77, 1091, 1468, 1691, 1926, 2103, 2166, 2370
MboI	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
MflI	RGATCY	4 cut(s)	1466, 1924, 2164, 2368
MhlI	GDGCHC	1 cut(s)	1077
MlsI	TGGCCA	2 cut(s)	5, 98
MluNI	TGGCCA	2 cut(s)	5, 98
MlyI	GAGTC	4 cut(s)	112, 222, 355, 1940
MmeI	TCCRAC	1 cut(s)	1677
Mox20I	TGGCCA	2 cut(s)	5, 98
Mph1103I	ATGCAT	1 cut(s)	1854
MroI	TCCGGA	1 cut(s)	2433
MroXI	GAANNNNTTC	3 cut(s)	30, 1761, 2619
MscI	TGGCCA	2 cut(s)	5, 98
MseI	TTAA	8 cut(s)	837, 1058, 1142, 1316, 1326, 1535, 2364, 2444
MslI	CAYNNNNRTG	2 cut(s)	2312, 2536
Msp20I	TGGCCA	2 cut(s)	5, 98
MspA1I	CMGCKG	1 cut(s)	1249
MspI	CCGG	1 cut(s)	2434
MspR9I	CCNGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
Mva1269I	GAATGC	1 cut(s)	1492
MvaI	CCWGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
MvnI	CGCG	3 cut(s)	108, 1409, 2302
MwoI	GCNNNNNNNGC	9 cut(s)	47, 491, 709, 716, 1255, 1895, 2051, 2279, 2310
NdeI	CATATG	3 cut(s)	425, 1294, 2284
NdeII	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
NlaIV	GGNNCC	7 cut(s)	64, 189, 246, 398, 546, 1344, 1602
NmeAIII	GCCGAG	1 cut(s)	640
NmuCI	GTSAC	5 cut(s)	299, 514, 1217, 1976, 2137
NruI	TCGCGA	1 cut(s)	1409
NsbI	TGCGCA	2 cut(s)	380, 1581
NsiI	ATGCAT	1 cut(s)	1854
NspI	RCATGY	2 cut(s)	734, 1018
NspV	TTCGAA	2 cut(s)	880, 2334
PaeR7I	CTCGAG	1 cut(s)	2144
PagI	TCATGA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 1396, 2580, 2589
PctI	GAATGC	1 cut(s)	1492
PdmI	GAANNNNTTC	3 cut(s)	30, 1761, 2619
PfeI	GAWTC	3 cut(s)	557, 866, 1757
PflMI	CCANNNNNTGG	2 cut(s)	1963, 2275
PfoI	TCCNGGA	1 cut(s)	1618
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	4 cut(s)	111, 221, 354, 1939
PpsI	GAGTC	4 cut(s)	111, 221, 354, 1939
Ppu21I	YACGTR	1 cut(s)	92
Psp1406I	AACGTT	2 cut(s)	1867, 2619
Psp6I	CCWGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
PspGI	CCWGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
PspN4I	GGNNCC	7 cut(s)	64, 189, 246, 398, 546, 1344, 1602
PspPI	GGNCC	4 cut(s)	188, 372, 484, 1343
PsrI	GAACNNNNNNTAC	2 cut(s)	2058, 2090
PstI	CTGCAG	3 cut(s)	1367, 1510, 1900
PsuI	RGATCY	4 cut(s)	1466, 1924, 2164, 2368
PvuI	CGATCG	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	1249
RruI	TCGCGA	1 cut(s)	1409
RsaI	GTAC	8 cut(s)	532, 729, 1280, 1602, 2072, 2111, 2299, 2573
RsaNI	GTAC	8 cut(s)	531, 728, 1279, 1601, 2071, 2110, 2298, 2572
RseI	CAYNNNNRTG	2 cut(s)	2312, 2536
SalI	GTCGAC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	8 cut(s)	837, 1058, 1142, 1316, 1326, 1535, 2364, 2444
Sau3AI	GATC	8 cut(s)	75, 1089, 1466, 1689, 1924, 2101, 2164, 2368
Sau96I	GGNCC	4 cut(s)	188, 372, 484, 1343
SchI	GAGTC	4 cut(s)	112, 222, 355, 1940
ScrFI	CCNGG	5 cut(s)	1620, 1722, 2231, 2270, 2625
SduI	GDGCHC	1 cut(s)	1077
SexAI	ACCWGGT	1 cut(s)	1720
SfaNI	GCATC	7 cut(s)	280, 302, 888, 989, 1507, 1882, 2522
SfcI	CTRYAG	3 cut(s)	1363, 1506, 1896
Sfr274I	CTCGAG	1 cut(s)	2144
SfuI	TTCGAA	2 cut(s)	880, 2334
SinI	GGWCC	3 cut(s)	188, 372, 1343
SlaI	CTCGAG	1 cut(s)	2144
SmiMI	CAYNNNNRTG	2 cut(s)	2312, 2536
SmlI	CTYRAG	3 cut(s)	266, 1177, 2144
SmoI	CTYRAG	3 cut(s)	266, 1177, 2144
SpeI	ACTAGT	2 cut(s)	296, 601
SseBI	AGGCCT	1 cut(s)	1258
SsiI	CCGC	6 cut(s)	50, 108, 445, 719, 1276, 1550
SspI	AATATT	3 cut(s)	828, 1027, 1542
SspMI	CTAG	8 cut(s)	297, 602, 779, 1133, 1194, 1460, 1479, 2088
StuI	AGGCCT	1 cut(s)	1258
StyD4I	CCNGG	5 cut(s)	1618, 1720, 2229, 2268, 2623
TaaI	ACNGT	6 cut(s)	369, 589, 1453, 1839, 2070, 2133
TaiI	ACGT	5 cut(s)	94, 438, 1870, 2002, 2622
TatI	WGTACW	3 cut(s)	530, 727, 2070
TauI	GCSGC	3 cut(s)	53, 447, 722
TfiI	GAWTC	3 cut(s)	557, 866, 1757
Tru1I	TTAA	8 cut(s)	837, 1058, 1142, 1316, 1326, 1535, 2364, 2444
Tru9I	TTAA	8 cut(s)	837, 1058, 1142, 1316, 1326, 1535, 2364, 2444
TscAI	CASTG	5 cut(s)	374, 391, 1222, 1501, 1515
TseFI	GTSAC	5 cut(s)	299, 514, 1217, 1976, 2137
TseI	GCWGC	9 cut(s)	785, 977, 1246, 1365, 1895, 2045, 2204, 2480, 2587
Tsp45I	GTSAC	5 cut(s)	299, 514, 1217, 1976, 2137
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	5 cut(s)	374, 391, 1222, 1501, 1515
Van91I	CCANNNNNTGG	2 cut(s)	1963, 2275
VpaK11BI	GGWCC	3 cut(s)	188, 372, 1343
XagI	CCTNNNNNAGG	1 cut(s)	1620
XapI	RAATTY	6 cut(s)	876, 1403, 1938, 2092, 2117, 2506
XbaI	TCTAGA	1 cut(s)	2087
XceI	RCATGY	2 cut(s)	734, 1018
XhoI	CTCGAG	1 cut(s)	2144
XmiI	GTMKAC	2 cut(s)	139, 2378
XmnI	GAANNNNTTC	3 cut(s)	30, 1761, 2619
XspI	CTAG	8 cut(s)	297, 602, 779, 1133, 1194, 1460, 1479, 2088
Zsp2I	ATGCAT	1 cut(s)	1854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.