Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431689.1

Orthogroup ID

OG0006651

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1405

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcgaaatccagcgccgacgaccaggagctccggcgagcctgcgaggccgcaatcgaaggcaccaagcagtccgtggtcatgtcgatccgtgtcgccaagagccggggcatgtgggggaagactcacaagctcggccgcgacatggccaaacctagggttcttgccctttccgtcaaaaacaaaggccagcggactaaagcctttcttcgagtcttaaaatattccactggaggagttctagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec3-PIP2_bind Sec3_C

Protein Analysis

82

Amino Acids

9.03

Weight (kDa)

10.58

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47550 AT1G47550 AT1G47560
fragaria_vesca	FvH4_2g40450 FvH4_2g40450 FvH4_2g40450 FvH4_2g40450
malus_domestica	MD00G1038900.v1.1 MD08G1038000.v1.1
prunus_persica	Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1 Prupe.1G385700_v2.0.a1
pyrus_communis	pycom08g03010 pycom15g02940
rosa_chinensis	RchiOBHm_Chr6g0300281
rosa_laevigata	RLG00000011351
rosa_multiflora	Rmu_co8431689.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167930
rosa_rugosa	Rorug06G0294700
rosa_samantha	Rh6AG407200 Rh6BG414800 Rh6CG422100 Rh6DG407800 Rh7BG034300
rosa_wichuraiana	Rw6G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	51, 139, 193
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	136, 147
AfiI	CCNNNNNNNGG	3 cut(s)	105, 145, 156
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	31, 133
AluI	AGCT	2 cut(s)	31, 133
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	4 cut(s)	48, 136, 147, 187
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	107
AvrII	CCTAGG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	107
BfaI	CTAG	2 cut(s)	156, 242
BfoI	RGCGCY	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	51, 139
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	52, 140
Bme1390I	CCNGG	2 cut(s)	26, 107
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	26, 107
BpiI	GAAGAC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	75, 106, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 145, 156
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	75, 106, 155
BseLI	CCNNNNNNNGG	3 cut(s)	105, 145, 156
BseNI	ACTGG	1 cut(s)	235
BseX3I	CGGCCG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	4 cut(s)	50, 138, 149, 189
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	34, 106
BslI	CCNNNNNNNGG	3 cut(s)	105, 145, 156
BsnI	GGCC	4 cut(s)	50, 138, 149, 189
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	51, 139, 193
BspANI	GGCC	4 cut(s)	50, 138, 149, 189
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	75, 106, 155
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	39, 43, 191
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	24, 105
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	128
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	50, 138, 149, 189
BtgI	CCRYGG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	39, 43, 191
CfoI	GCGC	1 cut(s)	17
CviAII	CATG	3 cut(s)	82, 112, 145
CviJI	RGCY	9 cut(s)	31, 41, 50, 105, 133, 138, 149, 189, 203
CviKI_1	RGCY	9 cut(s)	31, 41, 50, 105, 133, 138, 149, 189, 203
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	136, 147
EagI	CGGCCG	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	85, 115, 148
FaiI	YATR	3 cut(s)	83, 113, 146
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	3 cut(s)	81, 111, 144
Fnu4HI	GCNGC	2 cut(s)	51, 139
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	51, 139
FspBI	CTAG	2 cut(s)	156, 242
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	51, 139
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	50, 138, 149, 189
HapII	CCGG	2 cut(s)	34, 106
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	85, 115, 148
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	124, 213
HpaII	CCGG	2 cut(s)	34, 106
Hpy188III	TCNNGA	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	85, 115, 148
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	28, 36
LpnPI	CCDG	8 cut(s)	11, 25, 38, 47, 55, 119, 203, 216
MaeI	CTAG	2 cut(s)	156, 242
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	133, 200
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	118, 222
MnlI	CCTC	2 cut(s)	40, 227
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	2 cut(s)	34, 106
MspR9I	CCNGG	2 cut(s)	26, 107
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	85, 115, 148
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	114
NspI	RCATGY	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	52, 140
PleI	GAGTC	2 cut(s)	118, 221
PpsI	GAGTC	2 cut(s)	118, 221
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	64
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	51, 139
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	118, 222
ScrFI	CCNGG	2 cut(s)	26, 107
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	3 cut(s)	33, 135, 157
SsiI	CCGC	3 cut(s)	51, 139, 193
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	2 cut(s)	156, 242
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	24, 105
StyI	CCWWGG	1 cut(s)	155
TaqI	TCGA	3 cut(s)	57, 86, 211
TauI	GCSGC	2 cut(s)	53, 141
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	235
TspGWI	ACGGA	3 cut(s)	64, 80, 163
TspRI	CASTG	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	2 cut(s)	156, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.