Rh7BG034300

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006651
Physical Location & Seq
Reverse (-)
2274972 .. 2279639
4668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG034300.1

Sequence Viewer

Length: 1323 bp
ATGAGCCGGCCCATGAACTGCTACGATAGAGTTTTGGCCCATAAGTTCAACTCTGGGCCAGTCCAGGAAGAATGTCTCCTCCGATTGGAACACGTACTTATTCACATTTGGAAAGCACGTTCTGATGTCTACTCCATCGCTATGTCTGACCATTGTGTATACACAAACATGATCAAACCATGGCATTTCAAACTAAAAGCCAAAAAAAACGAAAGAGGGAGAAGAAGAATGGATCAATTATATACAAGCGCAGCAATTGCGGTCAAGAGAACCACCGCTGACGATCTCTTCCTGCTGTTTGATAGGTACGGGAAGGTCGTCGACGTGTTTATCCCCCGAGATCGGAGGACCGGCGATTCGCGCGGCTTCACTTTTGTGCGGTATAAGTATCAGGATGAGGCGGCCAAGGCCGTGGATAAGCTCGACGGGAGAGTTGTGGATGGGAGAGAGATTATGGTTCAGTTTTCTAAGTATGGTCCAAATGCTAAAAGGATTCACAAGGGAAAGATAAGTGAATCTTCCTCCAAGCTGAAAAGCAGGTCAAGAAGCCGTAGCCCTCGTCCAAGAATGCTAAAGAATGAAAACACATTGCTGTTTTCTGTACATTACTACACTTCCACTTGGAACTATGCAAACATGCGAGCTGTTAAAGAGAAGCGGGCAGAACTTGAAAAATTAAAAGCTACATTTGTCAGAAGAGCTTCTGAGTTCTTGCGAAATTACTTTGCTAGTTTGGTGGATTTCATGATAAGTGACAAGAGCTACTTTTCTCAGCGGGAGCAACTGAAAAGGCCTGATCATGCTGATCTACGGTATAAATGCAGGACATATGCTCGCCTTCTGCAACATTTAAAGGCTCGTGAATTTGCAAATGAGCTTCGTGCTAGTACAAAGGCATCAAAAAATCCAACTGTCTGGCTTGAAGCTTCTACTGGTTCTGGTCAAAGTATGAATGCTGCAGACACTTCTACCGTTTCTGAAGCTTATTCCAAGATGCTAACAATTTTTATCCCACTCCTTGTAGATGAGAGTTCTTTTTTCGCACACTTTATGTGCTTTGAAGTTCCTGCACTTGTTCCTCCAGGGGGTACTGCCAATGGAGATAGATCTGAATACGATGATGATGACCCGAATGATGACGATTTGGGAATCATGGACATTGATGACAATGACAGTAAAGCTGGTAAACAAACGGGAGAGCTTGCAGCATTGAATGAATCTCTTCAGGATTTACTAGATGGAATCCAAACAGTATCCGATGATTTAGAGTCCACAGATGACCTTTCTAAGGTGTTCATGTGCGCGAAATTTGGTCTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec3-PIP2_bind Sec3_C

Protein Analysis

440

Amino Acids

50.43

Weight (kDa)

8.95

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 91 - 151 4e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 528
AccI GTMKAC 3 cut(s) 129, 159, 321
AccII CGCG 3 cut(s) 361, 363, 1304
AciI CCGC 7 cut(s) 260, 276, 363, 379, 401, 658, 775
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 863, 1307
AcuI CTGAAG 2 cut(s) 999, 1208
AfaI GTAC 5 cut(s) 96, 308, 603, 889, 1090
AfiI CCNNNNNNNGG 4 cut(s) 85, 342, 1085, 1288
AflIII ACRYGT 2 cut(s) 91, 324
AgsI TTSAA 6 cut(s) 49, 190, 671, 923, 1061, 1213
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 63, 1081
AleI CACNNNNGTG 1 cut(s) 374
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 6 cut(s) 8, 36, 56, 402, 408, 791
ApeKI GCWGC 3 cut(s) 251, 956, 1205
ApoI RAATTY 2 cut(s) 863, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
Asp700I GAANNNNTTC 2 cut(s) 700, 1221
AspLEI GCGC 3 cut(s) 251, 363, 1304
AspS9I GGNCC 5 cut(s) 9, 37, 56, 348, 476
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 2 cut(s) 348, 476
BauI CACGAG 1 cut(s) 858
BbvI GCAGC 3 cut(s) 263, 943, 1217
BccI CCATC 3 cut(s) 143, 434, 1232
BceAI ACGGC 2 cut(s) 395, 534
BciT130I CCWGG 2 cut(s) 65, 1083
BciVI GTATCC 1 cut(s) 1264
BclI TGATCA 2 cut(s) 171, 796
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 3 cut(s) 729, 885, 1235
BfmI CTRYAG 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 528
BfuI GTATCC 1 cut(s) 1264
BglII AGATCT 1 cut(s) 1106
BisI GCNGC 5 cut(s) 252, 364, 402, 957, 1206
BlsI GCNGC 5 cut(s) 253, 365, 403, 958, 1207
Bme1390I CCNGG 2 cut(s) 65, 1083
Bme18I GGWCC 2 cut(s) 348, 476
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 5 cut(s) 9, 37, 56, 348, 476
BmrFI CCNGG 2 cut(s) 65, 1083
BmsI GCATC 2 cut(s) 905, 984
BpmI CTGGAG 1 cut(s) 1065
BsaAI YACGTR 1 cut(s) 94
BsaJI CCNNGG 4 cut(s) 179, 405, 411, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 342, 1085, 1288
Bse118I RCCGGY 2 cut(s) 6, 350
Bse1I ACTGG 2 cut(s) 59, 937
Bse3DI GCAATG 1 cut(s) 587
BseBI CCWGG 2 cut(s) 65, 1083
BseDI CCNNGG 4 cut(s) 179, 405, 411, 1082
BseGI GGATG 2 cut(s) 400, 445
BseLI CCNNNNNNNGG 4 cut(s) 85, 342, 1085, 1288
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 696, 785
BseNI ACTGG 2 cut(s) 59, 937
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 263, 943, 1217
BsgI GTGCAG 1 cut(s) 1053
Bsh1236I CGCG 3 cut(s) 361, 363, 1304
BshFI GGCC 6 cut(s) 10, 38, 58, 404, 410, 793
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 2 cut(s) 7, 351
BslI CCNNNNNNNGG 4 cut(s) 85, 342, 1085, 1288
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 2 cut(s) 573, 958
BsnI GGCC 6 cut(s) 10, 38, 58, 404, 410, 793
BsoBI CYCGRG 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 7 cut(s) 260, 276, 363, 379, 401, 658, 775
BspANI GGCC 6 cut(s) 10, 38, 58, 404, 410, 793
BspCNI CTCAG 2 cut(s) 697, 784
BspFNI CGCG 3 cut(s) 361, 363, 1304
BspHI TCATGA 1 cut(s) 744
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 587
BsrFI RCCGGY 2 cut(s) 6, 350
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 2 cut(s) 59, 937
BssAI RCCGGY 2 cut(s) 6, 350
BssECI CCNNGG 4 cut(s) 179, 405, 411, 1082
BssMI GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
BssNAI GTATAC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 858
BssT1I CCWWGG 2 cut(s) 179, 405
Bst1107I GTATAC 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 858
Bst2UI CCWGG 2 cut(s) 65, 1083
Bst4CI ACNGT 5 cut(s) 813, 913, 973, 1175, 1252
Bst6I CTCTTC 3 cut(s) 293, 691, 1227
BstAPI GCANNNNNTGC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 601
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 5 cut(s) 8, 642, 660, 835, 1203
BstDEI CTNAG 4 cut(s) 468, 705, 771, 1287
BstDSI CCRYGG 2 cut(s) 179, 411
BstENI CCTNNNNNAGG 1 cut(s) 1286
BstF5I GGATG 2 cut(s) 400, 445
BstFNI CGCG 3 cut(s) 361, 363, 1304
BstHHI GCGC 3 cut(s) 251, 363, 1304
BstKTI GATC 7 cut(s) 174, 235, 286, 343, 799, 808, 1109
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
BstMWI GCNNNNNNNGC 3 cut(s) 257, 360, 407
BstNI CCWGG 2 cut(s) 65, 1083
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 63, 1081
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 3 cut(s) 361, 363, 1304
BstV1I GCAGC 3 cut(s) 263, 943, 1217
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 2 cut(s) 412, 915
BstYI RGATCY 1 cut(s) 1106
BstZ17I GTATAC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 6 cut(s) 10, 38, 58, 404, 410, 793
BtgI CCRYGG 2 cut(s) 179, 411
BtgZI GCGATG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 400, 445
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 5 cut(s) 8, 642, 660, 835, 1203
CciI TCATGA 1 cut(s) 744
CfoI GCGC 3 cut(s) 251, 363, 1304
Cfr10I RCCGGY 2 cut(s) 6, 350
Cfr13I GGNCC 5 cut(s) 9, 37, 56, 348, 476
Csp6I GTAC 5 cut(s) 95, 307, 602, 888, 1089
CviAII CATG 8 cut(s) 13, 169, 180, 637, 745, 800, 1153, 1297
CviQI GTAC 5 cut(s) 95, 307, 602, 888, 1089
DdeI CTNAG 4 cut(s) 468, 705, 771, 1287
DpnI GATC 7 cut(s) 173, 234, 285, 342, 798, 807, 1108
DpnII GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
DraI TTTAAA 1 cut(s) 852
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 3 cut(s) 293, 691, 1227
EarI CTCTTC 3 cut(s) 293, 691, 1227
Eco130I CCWWGG 2 cut(s) 179, 405
Eco147I AGGCCT 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 348, 476
Eco57I CTGAAG 2 cut(s) 999, 1208
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 1286
EcoRII CCWGG 2 cut(s) 63, 1081
EcoT14I CCWWGG 2 cut(s) 179, 405
ErhI CCWWGG 2 cut(s) 179, 405
FaeI CATG 8 cut(s) 16, 172, 183, 640, 748, 803, 1156, 1300
FalI AAGNNNNNCTT 4 cut(s) 502, 534, 749, 781
FatI CATG 8 cut(s) 12, 168, 179, 636, 744, 799, 1152, 1296
FauI CCCGC 2 cut(s) 651, 768
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 2 cut(s) 171, 796
FblI GTMKAC 3 cut(s) 129, 159, 321
Fnu4HI GCNGC 5 cut(s) 252, 364, 402, 957, 1206
FokI GGATG 2 cut(s) 407, 452
Fsp4HI GCNGC 5 cut(s) 252, 364, 402, 957, 1206
FspBI CTAG 3 cut(s) 729, 885, 1235
GlaI GCGC 3 cut(s) 250, 362, 1303
GluI GCNGC 5 cut(s) 252, 364, 402, 957, 1206
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 6 cut(s) 10, 38, 58, 404, 410, 793
HapII CCGG 2 cut(s) 7, 351
HhaI GCGC 3 cut(s) 251, 363, 1304
Hin1II CATG 8 cut(s) 16, 172, 183, 640, 748, 803, 1156, 1300
Hin6I GCGC 3 cut(s) 249, 361, 1302
HinP1I GCGC 3 cut(s) 249, 361, 1302
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 924, 981
HinfI GANTC 7 cut(s) 356, 493, 515, 1149, 1217, 1242, 1268
HpaII CCGG 2 cut(s) 7, 351
Hpy166II GTNNAC 5 cut(s) 130, 160, 322, 1187, 1272
Hpy188I TCNGA 9 cut(s) 83, 124, 148, 345, 695, 706, 979, 1111, 1258
Hpy188III TCNNGA 7 cut(s) 265, 392, 543, 745, 860, 1226, 1316
Hpy8I GTNNAC 5 cut(s) 130, 160, 322, 1187, 1272
Hpy99I CGWCG 3 cut(s) 323, 326, 428
HpyAV CCTTC 2 cut(s) 307, 848
HpyCH4III ACNGT 5 cut(s) 813, 913, 973, 1175, 1252
HpyCH4IV ACGT 3 cut(s) 93, 118, 324
HpyCH4V TGCA 7 cut(s) 632, 822, 844, 869, 959, 1070, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 360, 407
HpyF3I CTNAG 4 cut(s) 468, 705, 771, 1287
HpySE526I ACGT 3 cut(s) 93, 118, 324
Hsp92II CATG 8 cut(s) 16, 172, 183, 640, 748, 803, 1156, 1300
HspAI GCGC 3 cut(s) 249, 361, 1302
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Ksp22I TGATCA 2 cut(s) 171, 796
Kzo9I GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
LguI GCTCTTC 1 cut(s) 691
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 3 cut(s) 263, 943, 1217
LweI GCATC 2 cut(s) 905, 984
MaeI CTAG 3 cut(s) 729, 885, 1235
MaeII ACGT 3 cut(s) 93, 118, 324
MaeIII GTNAC 1 cut(s) 752
MalI GATC 7 cut(s) 173, 234, 285, 342, 798, 807, 1108
MboI GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
MboII GAAGA 7 cut(s) 80, 234, 237, 280, 510, 708, 1214
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 1106
MluCI AATT 7 cut(s) 236, 255, 674, 718, 863, 1002, 1307
MlyI GAGTC 1 cut(s) 1277
MmeI TCCRAC 1 cut(s) 932
MnlI CCTC 7 cut(s) 89, 209, 339, 391, 532, 567, 1089
MroNI GCCGGC 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 700, 1221
MseI TTAA 3 cut(s) 648, 677, 851
MslI CAYNNNNRTG 3 cut(s) 140, 167, 374
MspA1I CMGCKG 2 cut(s) 278, 775
MspI CCGG 2 cut(s) 7, 351
MspR9I CCNGG 2 cut(s) 65, 1083
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 2 cut(s) 573, 958
MvaI CCWGG 2 cut(s) 65, 1083
MvnI CGCG 3 cut(s) 361, 363, 1304
MwoI GCNNNNNNNGC 3 cut(s) 257, 360, 407
NaeI GCCGGC 1 cut(s) 8
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 829
NdeII GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 8 cut(s) 16, 172, 183, 640, 748, 803, 1156, 1300
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 1 cut(s) 640
OliI CACNNNNGTG 1 cut(s) 374
PagI TCATGA 1 cut(s) 744
PceI AGGCCT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 2 cut(s) 573, 958
PdiI GCCGGC 1 cut(s) 8
PdmI GAANNNNTTC 2 cut(s) 700, 1221
PfeI GAWTC 6 cut(s) 356, 493, 515, 1149, 1217, 1242
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 5 cut(s) 253, 365, 403, 958, 1207
PleI GAGTC 1 cut(s) 1276
PpsI GAGTC 1 cut(s) 1276
Ppu21I YACGTR 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 63, 1081
PspGI CCWGG 2 cut(s) 63, 1081
PspPI GGNCC 5 cut(s) 9, 37, 56, 348, 476
PstI CTGCAG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 1106
RsaI GTAC 5 cut(s) 96, 308, 603, 889, 1090
RsaNI GTAC 5 cut(s) 95, 307, 602, 888, 1089
RseI CAYNNNNRTG 3 cut(s) 140, 167, 374
SalI GTCGAC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 691
SaqAI TTAA 3 cut(s) 648, 677, 851
SatI GCNGC 5 cut(s) 252, 364, 402, 957, 1206
Sau3AI GATC 7 cut(s) 171, 232, 283, 340, 796, 805, 1106
Sau96I GGNCC 5 cut(s) 9, 37, 56, 348, 476
SchI GAGTC 1 cut(s) 1277
ScrFI CCNGG 2 cut(s) 65, 1083
SfaNI GCATC 2 cut(s) 905, 984
SfcI CTRYAG 1 cut(s) 957
SgrDI CGTCGACG 1 cut(s) 320
SinI GGWCC 2 cut(s) 348, 476
SmiMI CAYNNNNRTG 3 cut(s) 140, 167, 374
Sse9I AATT 7 cut(s) 236, 255, 674, 718, 863, 1002, 1307
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 7 cut(s) 260, 276, 363, 379, 401, 658, 775
SspMI CTAG 3 cut(s) 729, 885, 1235
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 2 cut(s) 63, 1081
StyI CCWWGG 2 cut(s) 179, 405
TaaI ACNGT 5 cut(s) 813, 913, 973, 1175, 1252
TaiI ACGT 3 cut(s) 96, 121, 327
TaqI TCGA 2 cut(s) 321, 423
TasI AATT 7 cut(s) 236, 255, 674, 718, 863, 1002, 1307
TatI WGTACW 2 cut(s) 601, 887
TauI GCSGC 2 cut(s) 366, 404
TfiI GAWTC 6 cut(s) 356, 493, 515, 1149, 1217, 1242
Tru1I TTAA 3 cut(s) 648, 677, 851
Tru9I TTAA 3 cut(s) 648, 677, 851
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 3 cut(s) 251, 956, 1205
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 6 cut(s) 29, 594, 733, 965, 1230, 1285
VpaK11BI GGWCC 2 cut(s) 348, 476
XagI CCTNNNNNAGG 1 cut(s) 1286
XapI RAATTY 2 cut(s) 863, 1307
XceI RCATGY 1 cut(s) 640
XmiI GTMKAC 3 cut(s) 129, 159, 321
XmnI GAANNNNTTC 2 cut(s) 700, 1221
XspI CTAG 3 cut(s) 729, 885, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.