Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Reverse (-)

17561286 .. 17562934

Gene Structure 1649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAACACGTTCTTCAAACTCGGAAGCTTAATCCAACGCACTGCTTCTCAAATCTCTTCTTCTTTCCCAAAATCTCGTTTCTTCTCCGATGGAGAAAGTGCTGTTTATCACCATGCGCGTTTGTTCAAGAAACCACTATCTACCAAGCTTAAATTCAATCTTGTGAACTCCGTGAGTCTTATGGGTTTCGTTGATCGATCTATTCAAGTCATGAACACCGGACCTGATAGGTTCGGTGTTTTCACTATTCTTAGAGTCAAAGACCCTCTCAATCCAAACCGGAGCTTTAGGATATCACTTAGAATGTGGGACGCAATGGCACGGACTTGTATTGCGCATCTGAAGCTAAATGATCATATACTTGTCTCAGGCCGTCTTGAGTCTTACAGCAAGAGCTCCAGCGATGTATATAGTGGCTTAAATCTCGATTATCAGGTTAAAGTGGCAGAAGTGAATTATGTGGCGGCTCCACCAAGTCACGTCTTAGATTCTCAGATATCCAAAAACCCAAAAACGAAAACAGAGGATGATATTGAAGAATCCAAGAAAGATGAGATATACTTGTGGCAAGTCTTCTTTTCGAATCCATACGATTGGTGGGACAACAGGAGAAATAAGAAGAACCCAAAGCAACCCGACTTTAAGCATAAAGATACAGGTGAAGCTCTCTGGCTTTGCTCAGATTTACCGGACTGGATTACTAGACGACTTGAATTGTTCGACCAGAAAAACCGCTTTTACGATGAAGAAAAAACACGTCGTGACCGTCTTTCTGACTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

261

Amino Acids

30.56

Weight (kDa)

9.34

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	336
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	464, 733
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	761
AflIII	ACRYGT	2 cut(s)	6, 755
AgsI	TTSAA	6 cut(s)	16, 127, 157, 206, 536, 713
AjiI	CACGTC	2 cut(s)	481, 758
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	6 cut(s)	27, 148, 285, 346, 396, 665
AluI	AGCT	6 cut(s)	27, 148, 285, 346, 396, 665
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	370
AoxI	GGCC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	118, 337
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	101, 671
AsuII	TTCGAA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	702
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	2 cut(s)	481, 758
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	468
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	382
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	196
BsaWI	WCCGGW	3 cut(s)	218, 279, 688
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	196
BseGI	GGATG	1 cut(s)	532
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	381, 506, 693
BseNI	ACTGG	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	219, 280, 689
BslFI	GGGAC	2 cut(s)	323, 614
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	323, 614
BsnI	GGCC	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	193, 197, 352
BspACI	CCGC	2 cut(s)	464, 733
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	3 cut(s)	380, 505, 692
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	468
BspT104I	TTCGAA	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	698
BssMI	GATC	3 cut(s)	193, 197, 352
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	581
BstDEI	CTNAG	6 cut(s)	251, 299, 367, 484, 492, 679
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	118, 337
BstKTI	GATC	3 cut(s)	196, 200, 355
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	193, 197, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	594
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	417
BtrI	CACGTC	2 cut(s)	481, 758
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	118, 337
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	1 cut(s)	320
CviAII	CATG	2 cut(s)	113, 211
DdeI	CTNAG	6 cut(s)	251, 299, 367, 484, 492, 679
DpnI	GATC	3 cut(s)	195, 199, 354
DpnII	GATC	3 cut(s)	193, 197, 352
DraIII	CACNNNGTG	1 cut(s)	761
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	398
Eco32I	GATATC	2 cut(s)	294, 498
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	396
EcoRV	GATATC	2 cut(s)	294, 498
EcoT38I	GRGCYC	1 cut(s)	398
FaeI	CATG	2 cut(s)	116, 214
FaqI	GGGAC	2 cut(s)	323, 614
FatI	CATG	2 cut(s)	112, 210
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	702
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	2 cut(s)	117, 336
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	3 cut(s)	219, 280, 689
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	2 cut(s)	118, 337
Hin1II	CATG	2 cut(s)	116, 214
Hin6I	GCGC	2 cut(s)	116, 335
HinP1I	GCGC	2 cut(s)	116, 335
HindIII	AAGCTT	2 cut(s)	25, 146
HinfI	GANTC	6 cut(s)	175, 255, 380, 488, 539, 583
HpaII	CCGG	3 cut(s)	219, 280, 689
HphI	GGTGA	2 cut(s)	101, 671
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	6 cut(s)	23, 88, 342, 495, 682, 775
Hpy188III	TCNNGA	5 cut(s)	127, 211, 377, 425, 761
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	762
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	3 cut(s)	8, 480, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	6 cut(s)	251, 299, 367, 484, 492, 679
HpySE526I	ACGT	3 cut(s)	8, 480, 757
Hsp92II	CATG	2 cut(s)	116, 214
HspAI	GCGC	2 cut(s)	116, 335
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	193, 197, 352
LmnI	GCTCC	3 cut(s)	282, 401, 472
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	3 cut(s)	8, 480, 757
MaeIII	GTNAC	2 cut(s)	476, 761
MalI	GATC	3 cut(s)	195, 199, 354
MboI	GATC	3 cut(s)	193, 197, 352
MboII	GAAGA	8 cut(s)	4, 48, 51, 73, 548, 565, 631, 758
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	3 cut(s)	152, 454, 713
MlyI	GAGTC	3 cut(s)	184, 264, 389
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	276, 517
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	5 cut(s)	29, 150, 419, 438, 642
MspI	CCGG	3 cut(s)	219, 280, 689
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	3 cut(s)	193, 197, 352
NlaIII	CATG	2 cut(s)	116, 214
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	476, 761
NsbI	TGCGCA	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	581
PagI	TCATGA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	488, 539, 583
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	3 cut(s)	183, 263, 388
PpsI	GAGTC	3 cut(s)	183, 263, 388
Psp124BI	GAGCTC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	5 cut(s)	29, 150, 419, 438, 642
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	193, 197, 352
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	3 cut(s)	184, 264, 389
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	1 cut(s)	346
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	152, 454, 713
SsiI	CCGC	2 cut(s)	464, 733
SspMI	CTAG	1 cut(s)	702
SstI	GAGCTC	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	3 cut(s)	11, 483, 760
TaqI	TCGA	4 cut(s)	196, 426, 581, 720
TasI	AATT	3 cut(s)	152, 454, 713
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	488, 539, 583
Tru1I	TTAA	5 cut(s)	29, 150, 419, 438, 642
Tru9I	TTAA	5 cut(s)	29, 150, 419, 438, 642
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	476, 761
Tsp45I	GTSAC	2 cut(s)	476, 761
TspDTI	ATGAA	3 cut(s)	17, 227, 759
TspGWI	ACGGA	2 cut(s)	160, 337
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.