Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Reverse (-)

28969301 .. 28971650

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGGCCTTCCGTCTCCTATTTCCGCCGTTCAACAAACCAGCTCCGAAATCGCCTCTATTTCTTCAAAGGCTCTCCGCCGCCGCAGCCTATTCGTCTTCCGCCGCGAACCCTAGGTTTTCCAATTCTTTCTCCGACGAAGATGAAGAAGACAGCGGAGTTTACCAGCACAAACTCAAGTTCCAGCGTCCCACCACAATCCAACGGCGAGAGAATCCCGGTCCGGTCAACTCCGCTAGCTTCATCGGCTCAGTGAGCCTCCCCCTCCGGGTCAAAAACACAGCCCACGGTGGTCGTTTTGGCGTTCACACTTTTCTCACCGTCAGAAATTGGCCCCAGTCTGAGAGCACTTTTCGGATATTACTGAAGATGTGGGACGAGATGGCTGTATTGTCTTTCAAGCATTTGAAACAGAATGATTTTATTTATGTCTCAGGTCATCTAAGTTCTTACACAAAGAATAAACTCGATGGGAGCTGCACATTGTATCATGAGTTAGTTGTGAAGGAGTTGAATTACGTGGCACAGCGTGGACAAGGACCAGGATGTGCAAATCATGAGAAACCACAATCTGATGGAGGTGAAACTGGTTTGGAGAAGTCTAGGGAACGGCTTCACTTATGGCAAGTATTTTTCGCCAATCCATATGATTGGTGGGATAACAGGAAGAGAAAGTTGAATCCAAGACAACCAGATTTTAATCACAAGTATGTCGATGAAGCTCTCTGGTTGAGACCAGATGATCCTCCATGGGTTAAAACACAAATTCATCGGCTTGACGAGAGAATGGTGGAACAAGGTCATGGCGAACAAGTAGGTCATCATCGTCGTATCTCCAAGTGGGAGTACGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

286

Amino Acids

33.1

Weight (kDa)

9.3

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	8 cut(s)	26, 78, 81, 84, 102, 105, 156, 234
AclWI	GGATC	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	386
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	34, 68, 400, 409, 514, 679
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	44, 240, 477, 722
AluI	AGCT	4 cut(s)	44, 240, 477, 722
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	3 cut(s)	20, 436, 727
AlwI	GGATC	1 cut(s)	737
AoxI	GGCC	2 cut(s)	6, 332
ApeKI	GCWGC	2 cut(s)	86, 477
ApoI	RAATTY	1 cut(s)	765
Asp700I	GAANNNNTTC	2 cut(s)	8, 612
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	221, 333, 539
AsuC2I	CCSGG	2 cut(s)	219, 269
AsuHPI	GGTGA	2 cut(s)	310, 593
AsuNHI	GCTAGC	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	221, 539
AvrII	CCTAGG	1 cut(s)	113
BbsI	GAAGAC	2 cut(s)	90, 156
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	98, 464
BccI	CCATC	3 cut(s)	376, 464, 569
BceAI	ACGGC	3 cut(s)	13, 221, 626
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	219, 269
BcoDI	GTCTC	3 cut(s)	20, 436, 727
BfaI	CTAG	3 cut(s)	114, 237, 603
BisI	GCNGC	5 cut(s)	81, 84, 87, 105, 478
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	5 cut(s)	82, 85, 88, 106, 479
Bme1390I	CCNGG	3 cut(s)	219, 269, 543
Bme18I	GGWCC	2 cut(s)	221, 539
BmgT120I	GGNCC	3 cut(s)	221, 333, 539
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	3 cut(s)	219, 269, 543
BmrI	ACTGGG	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	90, 156
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	219, 269
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	113, 286, 749
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	337, 592
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	113, 286, 749
BseGI	GGATG	1 cut(s)	551
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	3 cut(s)	264, 333, 447
BseNI	ACTGG	2 cut(s)	337, 592
BseXI	GCAGC	2 cut(s)	98, 464
BsgI	GTGCAG	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	8, 334
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	219, 224, 268
BslFI	GGGAC	2 cut(s)	174, 389
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	20, 436, 727
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	174, 389
BsnI	GGCC	2 cut(s)	8, 334
Bso31I	GGTCTC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	742
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	8 cut(s)	26, 78, 81, 84, 102, 105, 156, 234
BspANI	GGCC	2 cut(s)	8, 334
BspCNI	CTCAG	3 cut(s)	263, 334, 446
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	2 cut(s)	490, 556
BspLI	GGNNCC	1 cut(s)	335
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	337, 592
BssECI	CCNNGG	3 cut(s)	113, 286, 749
BssMI	GATC	1 cut(s)	742
BssT1I	CCWWGG	2 cut(s)	113, 749
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	290, 322
Bst6I	CTCTTC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	250, 342, 433, 443
BstDSI	CCRYGG	2 cut(s)	286, 749
BstF5I	GGATG	1 cut(s)	551
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	3 cut(s)	20, 436, 727
BstMBI	GATC	1 cut(s)	742
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 246, 255
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	3 cut(s)	217, 267, 541
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	98, 464
BstV2I	GAAGAC	2 cut(s)	90, 156
BstXI	CCANNNNNNTGG	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	8, 334
BtgI	CCRYGG	2 cut(s)	286, 749
BtsCI	GGATG	1 cut(s)	551
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	2 cut(s)	490, 556
Cfr13I	GGNCC	3 cut(s)	221, 333, 539
CpoI	CGGWCCG	1 cut(s)	221
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	847
CspI	CGGWCCG	1 cut(s)	221
CviAII	CATG	4 cut(s)	491, 557, 750, 803
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	4 cut(s)	250, 342, 433, 443
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
DraIII	CACNNNGTG	1 cut(s)	530
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
EciI	GGCGGA	3 cut(s)	15, 67, 91
Eco130I	CCWWGG	2 cut(s)	113, 749
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	221, 539
Eco57I	CTGAAG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	113, 749
ErhI	CCWWGG	2 cut(s)	113, 749
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	4 cut(s)	494, 560, 753, 806
FaiI	YATR	9 cut(s)	429, 492, 558, 622, 646, 648, 711, 751, 804
FaqI	GGGAC	2 cut(s)	174, 389
FatI	CATG	4 cut(s)	490, 556, 749, 802
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	81, 84, 87, 105, 478
FokI	GGATG	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	81, 84, 87, 105, 478
FspBI	CTAG	3 cut(s)	114, 237, 603
GluI	GCNGC	5 cut(s)	81, 84, 87, 105, 478
HaeIII	GGCC	2 cut(s)	8, 334
HapII	CCGG	3 cut(s)	219, 224, 268
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	494, 560, 753, 806
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	214, 679
HpaII	CCGG	3 cut(s)	219, 224, 268
HphI	GGTGA	2 cut(s)	310, 593
Hpy166II	GTNNAC	4 cut(s)	163, 229, 307, 533
Hpy188I	TCNGA	6 cut(s)	48, 136, 326, 343, 357, 574
Hpy188III	TCNNGA	2 cut(s)	491, 557
Hpy8I	GTNNAC	4 cut(s)	163, 229, 307, 533
Hpy99I	CGWCG	2 cut(s)	140, 831
HpyAV	CCTTC	2 cut(s)	19, 499
HpyCH4III	ACNGT	2 cut(s)	290, 322
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	480, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 246, 255
HpyF3I	CTNAG	4 cut(s)	250, 342, 433, 443
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	494, 560, 753, 806
Kzo9I	GATC	1 cut(s)	742
LmnI	GCTCC	2 cut(s)	49, 474
Lsp1109I	GCAGC	2 cut(s)	98, 464
MaeI	CTAG	3 cut(s)	114, 237, 603
MaeII	ACGT	1 cut(s)	519
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	7 cut(s)	56, 90, 152, 158, 161, 379, 679
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	4 cut(s)	124, 328, 514, 765
MmeI	TCCRAC	2 cut(s)	159, 226
MnlI	CCTC	5 cut(s)	66, 269, 275, 572, 756
MroXI	GAANNNNTTC	2 cut(s)	8, 612
MseI	TTAA	2 cut(s)	699, 756
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	219, 224, 268
MspR9I	CCNGG	3 cut(s)	219, 269, 543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	86, 246, 255
NciI	CCSGG	2 cut(s)	219, 269
NcoI	CCATGG	1 cut(s)	749
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	1 cut(s)	742
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	4 cut(s)	494, 560, 753, 806
NlaIV	GGNNCC	1 cut(s)	335
PagI	TCATGA	2 cut(s)	490, 556
PceI	AGGCCT	1 cut(s)	8
PdmI	GAANNNNTTC	2 cut(s)	8, 612
PfeI	GAWTC	2 cut(s)	214, 679
PkrI	GCNGC	5 cut(s)	82, 85, 88, 106, 479
Ppu21I	YACGTR	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	3 cut(s)	221, 333, 539
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	708
Rsr2I	CGGWCCG	1 cut(s)	221
RsrII	CGGWCCG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	699, 756
SatI	GCNGC	5 cut(s)	81, 84, 87, 105, 478
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	3 cut(s)	221, 333, 539
ScrFI	CCNGG	3 cut(s)	219, 269, 543
SduI	GDGCHC	1 cut(s)	350
SinI	GGWCC	2 cut(s)	221, 539
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	124, 328, 514, 765
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	8 cut(s)	26, 78, 81, 84, 102, 105, 156, 234
SspMI	CTAG	3 cut(s)	114, 237, 603
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	217, 267, 541
StyI	CCWWGG	2 cut(s)	113, 749
TaaI	ACNGT	2 cut(s)	290, 322
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	468, 714
TasI	AATT	4 cut(s)	124, 328, 514, 765
TauI	GCSGC	3 cut(s)	83, 86, 107
TfiI	GAWTC	2 cut(s)	214, 679
Tru1I	TTAA	2 cut(s)	699, 756
Tru9I	TTAA	2 cut(s)	699, 756
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	86, 477
TspDTI	ATGAA	5 cut(s)	17, 159, 232, 732, 758
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	221, 539
XapI	RAATTY	1 cut(s)	765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XmaJI	CCTAGG	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	8, 612
XspI	CTAG	3 cut(s)	114, 237, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.