Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Forward (+)

59282181 .. 59283808

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCGGGAAGTGCTCGGAAAACCCCGCCGCCTCCAAACTCCGGATCACCATCATATGAAGGCGTTTCGTCTCCTATTTCCGCCGAAACCGCCTTTATTTATTCAAAGGCTCACCGCCTATTCGTCTTCAGCCGCTAACCCTAGGTTTTCCGATTCTTTCTTCGAAGATGAAGAAGGCAGCGGAGTTTACCAGCACAAACTCAAGTTCCAGCGTCCCACCACAATCCAACGGCGACAGAATCCGGGTCCGGTCAACTCTGCTAGCTTCATTGGCTCCGTGATCCTCCCCCTCCGGGTCGCAAACACCGGCCACGGCGGTCGTTTTGGCGTTCACACTCTTCTCAGCGTCAGAAATTGCCCCCAGTCTGATAGCAGTTTCCGGATATTACTGAAGATGTGGGACGAGATGGCAGTATTGTCTTTCAAACATTTGAAACCAAATGATTTTATTTATGTCTCAGGTCATCTAGGTTCTTACACAAAGAATGATCCGGATGGGAGGATCACACTGTATCACGAGTTAGTTGTACAGGAGTTGAATTACGTGGCACAAAACGGACCAGGACCAAGATCTGAAAATCATGAGGAACCACAATCTGATGCAGGTGAAACTGGTTTGGAGAAGTGTAGGGAACGCCTTCACTTATGGCAAGTATTTTTTGCCAATCCATATGATTGGTGGGATAACAGGAAGACAAAGTTGAATTCAAGACGACCAGATTTTAAGCACAAGTATATGGATGAAGCTCTCTGGCTGACCCAAGATGATCCTCCATGGATTAAAAAACAAATTCATCGGCTTGACTTGAGAATGGCAGAACAAGGCCATGGCGAACAAGTAGGTCAGCATCGTCGTATCTCCAAGTGGGAGTACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

293

Amino Acids

34.19

Weight (kDa)

9.22

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	593
AccIII	TCCGGA	3 cut(s)	40, 378, 490
AciI	CCGC	9 cut(s)	4, 25, 28, 80, 89, 114, 132, 180, 315
AclWI	GGATC	5 cut(s)	51, 274, 482, 509, 761
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	703, 789
AcuI	CTGAAG	2 cut(s)	111, 410
AfaI	GTAC	2 cut(s)	528, 872
AfiI	CCNNNNNNNGG	2 cut(s)	40, 292
AgsI	TTSAA	6 cut(s)	104, 424, 433, 538, 703, 708
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	2 cut(s)	264, 746
AluI	AGCT	2 cut(s)	264, 746
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	74, 460
AlwI	GGATC	5 cut(s)	51, 274, 482, 509, 761
Aor13HI	TCCGGA	3 cut(s)	40, 378, 490
AoxI	GGCC	2 cut(s)	307, 823
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	703, 789
Asp700I	GAANNNNTTC	1 cut(s)	636
AspA2I	CCTAGG	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	245, 557, 563
AsuC2I	CCSGG	2 cut(s)	243, 293
AsuHPI	GGTGA	3 cut(s)	38, 103, 617
AsuII	TTCGAA	1 cut(s)	162
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	245, 557, 563
AvrII	CCTAGG	1 cut(s)	140
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	2 cut(s)	117, 698
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	3 cut(s)	57, 400, 488
BceAI	ACGGC	2 cut(s)	245, 328
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	2 cut(s)	243, 293
BcoDI	GTCTC	2 cut(s)	74, 460
BfaI	CTAG	3 cut(s)	141, 261, 467
BfuAI	ACCTGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	3 cut(s)	28, 132, 178
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	29, 133, 179
Bme1390I	CCNGG	3 cut(s)	243, 293, 561
Bme18I	GGWCC	3 cut(s)	245, 557, 563
BmgT120I	GGNCC	3 cut(s)	245, 557, 563
BmiI	GGNNCC	3 cut(s)	246, 274, 588
BmrFI	CCNGG	3 cut(s)	243, 293, 561
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	589, 856
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	117, 698
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	185, 826
BpuMI	CCSGG	2 cut(s)	243, 293
BsaAI	YACGTR	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	140, 310, 773, 826
BsaWI	WCCGGW	4 cut(s)	40, 247, 378, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 292
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	361, 616
Bse8I	GATNNNNATC	1 cut(s)	48
BseAI	TCCGGA	3 cut(s)	40, 378, 490
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	4 cut(s)	140, 310, 773, 826
BseGI	GGATG	2 cut(s)	499, 745
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	40, 292
BseMII	CTCAG	2 cut(s)	355, 471
BseNI	ACTGG	2 cut(s)	361, 616
BseXI	GCAGC	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	309, 825
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	7 cut(s)	41, 242, 248, 292, 306, 379, 491
BslFI	GGGAC	2 cut(s)	198, 413
BslI	CCNNNNNNNGG	2 cut(s)	40, 292
BsmAI	GTCTC	2 cut(s)	74, 460
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	198, 413
BsnI	GGCC	2 cut(s)	309, 825
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	3 cut(s)	40, 378, 490
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
Bsp19I	CCATGG	2 cut(s)	773, 826
BspACI	CCGC	9 cut(s)	4, 25, 28, 80, 89, 114, 132, 180, 315
BspANI	GGCC	2 cut(s)	309, 825
BspCNI	CTCAG	2 cut(s)	354, 470
BspEI	TCCGGA	3 cut(s)	40, 378, 490
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	246, 274, 588
BspMI	ACCTGC	1 cut(s)	593
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	5 cut(s)	51, 274, 482, 509, 761
BspT104I	TTCGAA	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	361, 616
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	140, 310, 773, 826
BssMI	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	3 cut(s)	140, 773, 826
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	544
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	341, 457
BstDSI	CCRYGG	3 cut(s)	310, 773, 826
BstF5I	GGATG	2 cut(s)	499, 745
BstKTI	GATC	6 cut(s)	46, 282, 490, 504, 572, 769
BstMAI	GTCTC	2 cut(s)	74, 460
BstMBI	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 88, 270
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	3 cut(s)	241, 291, 559
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	117, 698
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	309, 825
BtgI	CCRYGG	3 cut(s)	310, 773, 826
BtsCI	GGATG	2 cut(s)	499, 745
BtsIMutI	CAGTG	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	262
CciI	TCATGA	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	245, 557, 563
CseI	GACGC	2 cut(s)	200, 334
Csp6I	GTAC	2 cut(s)	527, 871
CviAII	CATG	3 cut(s)	581, 774, 827
CviJI	RGCY	9 cut(s)	109, 131, 264, 273, 309, 746, 754, 799, 825
CviKI_1	RGCY	9 cut(s)	109, 131, 264, 273, 309, 746, 754, 799, 825
CviQI	GTAC	2 cut(s)	527, 871
DdeI	CTNAG	2 cut(s)	341, 457
DpnI	GATC	6 cut(s)	45, 281, 489, 503, 571, 768
DpnII	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	140, 773, 826
Eco47I	GGWCC	3 cut(s)	245, 557, 563
Eco57I	CTGAAG	2 cut(s)	111, 410
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	3 cut(s)	140, 773, 826
ErhI	CCWWGG	3 cut(s)	140, 773, 826
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	584, 777, 830
FaqI	GGGAC	2 cut(s)	198, 413
FatI	CATG	3 cut(s)	580, 773, 826
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	2 cut(s)	54, 670
Fnu4HI	GCNGC	3 cut(s)	28, 132, 178
FokI	GGATG	2 cut(s)	506, 752
Fsp4HI	GCNGC	3 cut(s)	28, 132, 178
FspBI	CTAG	3 cut(s)	141, 261, 467
GluI	GCNGC	3 cut(s)	28, 132, 178
HaeIII	GGCC	2 cut(s)	309, 825
HapII	CCGG	7 cut(s)	41, 242, 248, 292, 306, 379, 491
HgaI	GACGC	2 cut(s)	200, 334
Hin1II	CATG	3 cut(s)	584, 777, 830
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	152, 238
HpaII	CCGG	7 cut(s)	41, 242, 248, 292, 306, 379, 491
HphI	GGTGA	3 cut(s)	38, 103, 617
Hpy166II	GTNNAC	3 cut(s)	187, 253, 331
Hpy188I	TCNGA	6 cut(s)	17, 151, 350, 367, 574, 598
Hpy188III	TCNNGA	6 cut(s)	41, 379, 491, 515, 581, 708
Hpy8I	GTNNAC	3 cut(s)	187, 253, 331
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	3 cut(s)	52, 167, 647
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	1 cut(s)	602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 88, 270
HpyF3I	CTNAG	2 cut(s)	341, 457
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	3 cut(s)	584, 777, 830
Kpn2I	TCCGGA	3 cut(s)	40, 378, 490
Kzo9I	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	589, 856
MaeI	CTAG	3 cut(s)	141, 261, 467
MaeII	ACGT	1 cut(s)	543
MalI	GATC	6 cut(s)	45, 281, 489, 503, 571, 768
MboI	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
MboII	GAAGA	7 cut(s)	117, 151, 176, 182, 329, 403, 703
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	352, 538, 703, 789
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	41, 293, 299, 492, 577, 780
MroI	TCCGGA	3 cut(s)	40, 378, 490
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	2 cut(s)	723, 780
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	7 cut(s)	41, 242, 248, 292, 306, 379, 491
MspR9I	CCNGG	3 cut(s)	243, 293, 561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	10, 88, 270
NciI	CCSGG	2 cut(s)	243, 293
NcoI	CCATGG	2 cut(s)	773, 826
NdeI	CATATG	2 cut(s)	54, 670
NdeII	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	584, 777, 830
NlaIV	GGNNCC	3 cut(s)	246, 274, 588
NspV	TTCGAA	1 cut(s)	162
PagI	TCATGA	1 cut(s)	580
PaqCI	CACCTGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	152, 238
PkrI	GCNGC	3 cut(s)	29, 133, 179
Ppu21I	YACGTR	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	246, 274, 588
PspPI	GGNCC	3 cut(s)	245, 557, 563
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	2 cut(s)	528, 872
RsaNI	GTAC	2 cut(s)	527, 871
SaqAI	TTAA	2 cut(s)	723, 780
SatI	GCNGC	3 cut(s)	28, 132, 178
Sau3AI	GATC	6 cut(s)	43, 279, 487, 501, 569, 766
Sau96I	GGNCC	3 cut(s)	245, 557, 563
ScrFI	CCNGG	3 cut(s)	243, 293, 561
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	146, 266, 463, 472, 546, 607, 748, 844
SfaNI	GCATC	2 cut(s)	589, 856
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	3 cut(s)	245, 557, 563
SmlI	CTYRAG	2 cut(s)	200, 805
SmoI	CTYRAG	2 cut(s)	200, 805
Sse9I	AATT	4 cut(s)	352, 538, 703, 789
SsiI	CCGC	9 cut(s)	4, 25, 28, 80, 89, 114, 132, 180, 315
SspMI	CTAG	3 cut(s)	141, 261, 467
StyD4I	CCNGG	3 cut(s)	241, 291, 559
StyI	CCWWGG	3 cut(s)	140, 773, 826
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	162
TasI	AATT	4 cut(s)	352, 538, 703, 789
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	30, 134
TfiI	GAWTC	2 cut(s)	152, 238
Tru1I	TTAA	2 cut(s)	723, 780
Tru9I	TTAA	2 cut(s)	723, 780
TscAI	CASTG	1 cut(s)	513
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	5 cut(s)	71, 183, 256, 756, 782
TspGWI	ACGGA	2 cut(s)	265, 570
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	3 cut(s)	245, 557, 563
XapI	RAATTY	2 cut(s)	703, 789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XmaJI	CCTAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	141, 261, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.