Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Reverse (-)

2054328 .. 2056032

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGGCGCTTCGTCGTCTACTCTCAATCAGCAAGCCAAGTCCCTCACTGTTGTTCTCCCAAAGGCTCTCCCTGTTCTCTTCAGCCACTAACCCTAGTTTTTCGAATTCCTTCTCATCCTCCGACGACGGCGACGAAGAAGAAGGCAGCGGCATTTACCGAAACAAACTCAAGTTCCAGCGTCCGAGAGCAATCACGCGGCGCCGTTGGGAGGAGAATTTGAATTTGGGGAACTCTGGTAGCTTTATCGGTACCGTGACTCACCCCCTTCGGGTCGTGAACAACAACGGCGGCCCCTTTGGAGTTCACACCGGCCTTCGCGTCAGAAACTCCCCGAAATCTGAGAGCAGTTTTTGGATATTGCTGAAGATGTGGGAGGAGATGGCAGAATTGTCCGTCAAACATTTGAAACCGAATGATTTTATTTATGTCTCTGGCCGTTTAGGTTCTTACACGAAGGTTGACCAGAATGGGAATTTGAGTATGCGTTATAAGTTAGACGTGAAGGAGTTGAATTACGTATCACAACATGGACACAGATTGAGCTCCAAAAATCACAAGGAACCACAATGCATTGAAGGTGGAGGTGATTTGGACAAGTATAAGGATCGCCTTCACTTGTGGCAAGTGTTTTTTAGCAATCCATATGAATGGTGGGATAACAGGGAAGGTAAGAAGAATCCGAGACAACCAGATTTCAAGCACAAGGATACGGGCGAAGCCCTCTGGCTGTCGCGAAATGATCCTCCGTGGATTGAAAAACAACTCCAGTTGCTTGATGAGAGAATGCCAAAACAAAGACACGGTGAACGACGTTCCTGTGTGTCAGAGTGGCAGTACGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

283

Amino Acids

32.86

Weight (kDa)

9.46

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	2 cut(s)	201, 251
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	3 cut(s)	199, 321, 736
AciI	CCGC	3 cut(s)	150, 199, 291
AclWI	GGATC	2 cut(s)	615, 737
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	4 cut(s)	106, 217, 223, 475
AcuI	CTGAAG	2 cut(s)	66, 386
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	2 cut(s)	253, 839
AfiI	CCNNNNNNNGG	2 cut(s)	211, 271
AgsI	TTSAA	6 cut(s)	223, 409, 514, 578, 700, 758
AjiI	CACGTC	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	243, 546
AluI	AGCT	2 cut(s)	243, 546
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	436, 679
AlwI	GGATC	2 cut(s)	615, 737
AoxI	GGCC	3 cut(s)	292, 313, 436
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	4 cut(s)	106, 217, 223, 475
Asp700I	GAANNNNTTC	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	10, 204
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	254, 599, 818
AsuII	TTCGAA	1 cut(s)	104
BanI	GGYRCC	2 cut(s)	201, 251
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	4 cut(s)	145, 189, 304, 423
BciVI	GTATCC	1 cut(s)	703
BcoDI	GTCTC	2 cut(s)	436, 679
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	2 cut(s)	11, 205
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	148, 151, 200, 292
BlsI	GCNGC	4 cut(s)	149, 152, 201, 293
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	4 cut(s)	203, 253, 295, 564
BpmI	CTGGAG	1 cut(s)	752
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 271
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	769
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	211, 271
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	2 cut(s)	227, 392
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	3 cut(s)	199, 321, 736
BshFI	GGCC	3 cut(s)	294, 315, 438
BshNI	GGYRCC	2 cut(s)	201, 251
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	211, 271
BsmAI	GTCTC	2 cut(s)	436, 679
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	3 cut(s)	294, 315, 438
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	607, 742
Bsp68I	TCGCGA	1 cut(s)	736
BspACI	CCGC	3 cut(s)	150, 199, 291
BspANI	GGCC	3 cut(s)	294, 315, 438
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	3 cut(s)	199, 321, 736
BspLI	GGNNCC	4 cut(s)	203, 253, 295, 564
BspPI	GGATC	2 cut(s)	615, 737
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	201, 251
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	2 cut(s)	607, 742
BssNI	GRCGYC	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	51, 256, 806
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	3 cut(s)	199, 321, 736
BstH2I	RGCGCY	2 cut(s)	11, 205
BstHHI	GCGC	2 cut(s)	10, 204
BstKTI	GATC	2 cut(s)	610, 745
BstMAI	GTCTC	2 cut(s)	436, 679
BstMBI	GATC	2 cut(s)	607, 742
BstSNI	TACGTA	1 cut(s)	520
BstUI	CGCG	3 cut(s)	199, 321, 736
BstV1I	GCAGC	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	294, 315, 438
BtgI	CCRYGG	1 cut(s)	749
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	47
BtuMI	TCGCGA	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	2 cut(s)	10, 204
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	2 cut(s)	170, 310
Csp6I	GTAC	2 cut(s)	252, 838
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	2 cut(s)	252, 838
DdeI	CTNAG	1 cut(s)	342
DinI	GGCGCC	1 cut(s)	203
DpnI	GATC	2 cut(s)	609, 744
DpnII	GATC	2 cut(s)	607, 742
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	546
Eco105I	TACGTA	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	66, 386
EcoICRI	GAGCTC	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	548
EgeI	GGCGCC	1 cut(s)	203
EheI	GGCGCC	1 cut(s)	203
FaeI	CATG	1 cut(s)	533
FaiI	YATR	7 cut(s)	429, 485, 492, 531, 603, 646, 648
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	529
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	148, 151, 200, 292
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	4 cut(s)	148, 151, 200, 292
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	2 cut(s)	9, 203
GluI	GCNGC	4 cut(s)	148, 151, 200, 292
GsuI	CTGGAG	1 cut(s)	752
HaeII	RGCGCY	2 cut(s)	11, 205
HaeIII	GGCC	3 cut(s)	294, 315, 438
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	2 cut(s)	170, 310
HhaI	GCGC	2 cut(s)	10, 204
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	8, 202
HinP1I	GCGC	2 cut(s)	8, 202
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	259, 679
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	254, 599, 818
Hpy166II	GTNNAC	5 cut(s)	20, 280, 307, 463, 809
Hpy188I	TCNGA	6 cut(s)	124, 186, 326, 343, 684, 829
Hpy188III	TCNNGA	2 cut(s)	277, 735
Hpy8I	GTNNAC	5 cut(s)	20, 280, 307, 463, 809
Hpy99I	CGWCG	5 cut(s)	18, 128, 131, 137, 816
HpyAV	CCTTC	9 cut(s)	121, 137, 278, 326, 451, 499, 572, 623, 662
HpyCH4III	ACNGT	3 cut(s)	51, 256, 806
HpyCH4IV	ACGT	3 cut(s)	501, 519, 814
HpyCH4V	TGCA	1 cut(s)	573
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	3 cut(s)	501, 519, 814
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	8, 202
KasI	GGCGCC	1 cut(s)	201
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	607, 742
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	3 cut(s)	501, 519, 814
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	609, 744
MboI	GATC	2 cut(s)	607, 742
MboII	GAAGA	5 cut(s)	72, 149, 152, 379, 688
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	6 cut(s)	106, 217, 223, 389, 475, 514
Mly113I	GGCGCC	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	55, 130, 205, 370, 578, 734, 756
Mph1103I	ATGCAT	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	792
MvnI	CGCG	3 cut(s)	199, 321, 736
NarI	GGCGCC	1 cut(s)	202
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	2 cut(s)	607, 742
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	4 cut(s)	203, 253, 295, 564
NmuCI	GTSAC	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	736
NsiI	ATGCAT	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	679
PkrI	GCNGC	4 cut(s)	149, 152, 201, 293
PleI	GAGTC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	548
PspN4I	GGNNCC	4 cut(s)	203, 253, 295, 564
PspPI	GGNCC	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	736
RsaI	GTAC	2 cut(s)	253, 839
RsaNI	GTAC	2 cut(s)	252, 838
RseI	CAYNNNNRTG	1 cut(s)	649
SacI	GAGCTC	1 cut(s)	548
SatI	GCNGC	4 cut(s)	148, 151, 200, 292
Sau3AI	GATC	2 cut(s)	607, 742
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	548
SfoI	GGCGCC	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SnaBI	TACGTA	1 cut(s)	520
Sse9I	AATT	6 cut(s)	106, 217, 223, 389, 475, 514
SsiI	CCGC	3 cut(s)	150, 199, 291
SspDI	GGCGCC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	51, 256, 806
TaiI	ACGT	3 cut(s)	504, 522, 817
TaqI	TCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	106, 217, 223, 389, 475, 514
TauI	GCSGC	3 cut(s)	153, 202, 294
TfiI	GAWTC	1 cut(s)	679
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 663
TspGWI	ACGGA	2 cut(s)	385, 738
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	4 cut(s)	106, 217, 223, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.