Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Reverse (-)

9008978 .. 9010423

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGGCGTTTCGTCTCCTATTTCCGCCACTCAACAAACCAAGTCACAAATCGCCTTTATTTATTCAAAGGCTGGCTGCCTATTCGTCTTCAGCCGCTAACCCTAGGTTTTCCGATTCTTTCTTCGAAGATGAAGAAGGCAGCGGAGCTTACCAGCACAAACTCAAGTTCCAGCGTCCCACCACAATCCAACGGCGACAGAATCCGGGTCCGGTGAACTCTGCTAGCTTCATTGGCTCCGTGATCCTCCCCCTCCGGTTCGCAAACACCGGCCACGGCGGTCGTTTTGGCGTTCACACTCTTCTCAGCGTCAGAAATAGCCCCCAGTCTGATAGCAGTTTCCGGATATTACTGAAGATGTGGGACGAGATGGCAGTATTGTCTTTCAAACATTTGAAACCAAATGATTTTATTTATGTCTCAGGTCATCTAGGTTCTTACACAAAGAATGATCCGGATGGGAGGATCACACTGTATCACGAGTTAGTTGTACAGGAGTTGAATTACGTGGCACAACACGGACAAGGACCAAGATCTGAAAATCATGAGGAAGCACAATCTGATGCAGGTGAAACTGGTTTGGAGAAGTGTAGGGAACGCCTTCACTTATGGCAAGTATTTTTTGCCAATCCATATGATTGGTGGGATAACAGGAAGACAAAGTTGAATTCAAGACGACCAGATTTTAAGCACAAGTATATGGATGAAGCTCTCTGGCTGAGCCCTGATGATCCTCCATGGATTAAAAAACAAATTCATCGGCTTGACTTGAGAATGGCAGAACAAGGCCATGGCGAACAAGTAGGTCAGCATCGTATCTCCAAGTGGGAGTACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

281

Amino Acids

32.47

Weight (kDa)

9.02

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	557
AccIII	TCCGGA	2 cut(s)	342, 454
AciI	CCGC	4 cut(s)	26, 96, 144, 279
AclWI	GGATC	4 cut(s)	238, 446, 473, 725
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	667, 753
AcuI	CTGAAG	2 cut(s)	75, 374
AfaI	GTAC	2 cut(s)	492, 833
AgsI	TTSAA	6 cut(s)	68, 388, 397, 502, 667, 672
AluBI	AGCT	3 cut(s)	149, 228, 710
AluI	AGCT	3 cut(s)	149, 228, 710
Alw26I	GTCTC	2 cut(s)	20, 424
AlwI	GGATC	4 cut(s)	238, 446, 473, 725
Aor13HI	TCCGGA	2 cut(s)	342, 454
AoxI	GGCC	2 cut(s)	271, 787
ApeKI	GCWGC	2 cut(s)	77, 141
ApoI	RAATTY	2 cut(s)	667, 753
Asp700I	GAANNNNTTC	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	209, 527
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	226, 581
AsuII	TTCGAA	1 cut(s)	126
AsuNHI	GCTAGC	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	209, 527
AvrII	CCTAGG	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	725
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	81, 662
BbvI	GCAGC	2 cut(s)	64, 153
BccI	CCATC	2 cut(s)	364, 452
BceAI	ACGGC	2 cut(s)	209, 292
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	20, 424
BfaI	CTAG	3 cut(s)	105, 225, 431
BfuAI	ACCTGC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	3 cut(s)	78, 96, 142
BlnI	CCTAGG	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	3 cut(s)	79, 97, 143
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	209, 527
BmgT120I	GGNCC	2 cut(s)	209, 527
BmiI	GGNNCC	2 cut(s)	210, 238
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	553, 820
BmtI	GCTAGC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	81, 662
Bpu1102I	GCTNAGC	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	149, 790
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	508
BsaJI	CCNNGG	4 cut(s)	104, 274, 737, 790
BsaWI	WCCGGW	4 cut(s)	211, 255, 342, 454
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	325, 580
BseAI	TCCGGA	2 cut(s)	342, 454
BseDI	CCNNGG	4 cut(s)	104, 274, 737, 790
BseGI	GGATG	2 cut(s)	463, 709
BseMII	CTCAG	3 cut(s)	319, 435, 710
BseNI	ACTGG	2 cut(s)	325, 580
BseXI	GCAGC	2 cut(s)	64, 153
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	273, 789
BsiEI	CGRYCG	1 cut(s)	283
BsiSI	CCGG	6 cut(s)	206, 212, 256, 270, 343, 455
BslFI	GGGAC	2 cut(s)	162, 377
BsmAI	GTCTC	2 cut(s)	20, 424
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	162, 377
BsnI	GGCC	2 cut(s)	273, 789
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	725
Bsp13I	TCCGGA	2 cut(s)	342, 454
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	243, 451, 465, 533, 730
Bsp1720I	GCTNAGC	1 cut(s)	719
Bsp19I	CCATGG	2 cut(s)	737, 790
BspACI	CCGC	4 cut(s)	26, 96, 144, 279
BspANI	GGCC	2 cut(s)	273, 789
BspCNI	CTCAG	3 cut(s)	318, 434, 711
BspEI	TCCGGA	2 cut(s)	342, 454
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	210, 238
BspMI	ACCTGC	1 cut(s)	557
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	4 cut(s)	238, 446, 473, 725
BspT104I	TTCGAA	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	325, 580
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	104, 274, 737, 790
BssMI	GATC	5 cut(s)	243, 451, 465, 533, 730
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	3 cut(s)	104, 737, 790
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	75, 226
BstDEI	CTNAG	3 cut(s)	305, 421, 719
BstDSI	CCRYGG	3 cut(s)	274, 737, 790
BstF5I	GGATG	2 cut(s)	463, 709
BstKTI	GATC	5 cut(s)	246, 454, 468, 536, 733
BstMAI	GTCTC	2 cut(s)	20, 424
BstMBI	GATC	5 cut(s)	243, 451, 465, 533, 730
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	64, 153
BstV2I	GAAGAC	2 cut(s)	81, 662
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	273, 789
BtgI	CCRYGG	3 cut(s)	274, 737, 790
BtsCI	GGATG	2 cut(s)	463, 709
BtsIMutI	CAGTG	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	75, 226
CciI	TCATGA	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	209, 527
CseI	GACGC	2 cut(s)	164, 298
Csp6I	GTAC	2 cut(s)	491, 832
CviAII	CATG	3 cut(s)	545, 738, 791
CviQI	GTAC	2 cut(s)	491, 832
DdeI	CTNAG	3 cut(s)	305, 421, 719
DpnI	GATC	5 cut(s)	245, 453, 467, 535, 732
DpnII	GATC	5 cut(s)	243, 451, 465, 533, 730
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	104, 737, 790
Eco24I	GRGCYC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	209, 527
Eco57I	CTGAAG	2 cut(s)	75, 374
EcoRI	GAATTC	1 cut(s)	667
EcoT14I	CCWWGG	3 cut(s)	104, 737, 790
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	3 cut(s)	104, 737, 790
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	3 cut(s)	548, 741, 794
FaiI	YATR	9 cut(s)	417, 546, 610, 634, 636, 699, 701, 739, 792
FaqI	GGGAC	2 cut(s)	162, 377
FatI	CATG	3 cut(s)	544, 737, 790
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	78, 96, 142
FokI	GGATG	2 cut(s)	470, 716
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	78, 96, 142
FspBI	CTAG	3 cut(s)	105, 225, 431
GluI	GCNGC	3 cut(s)	78, 96, 142
HaeIII	GGCC	2 cut(s)	273, 789
HapII	CCGG	6 cut(s)	206, 212, 256, 270, 343, 455
HgaI	GACGC	2 cut(s)	164, 298
Hin1II	CATG	3 cut(s)	548, 741, 794
HinfI	GANTC	2 cut(s)	116, 202
HpaII	CCGG	6 cut(s)	206, 212, 256, 270, 343, 455
HphI	GGTGA	2 cut(s)	226, 581
Hpy166II	GTNNAC	2 cut(s)	217, 295
Hpy188I	TCNGA	5 cut(s)	115, 314, 331, 538, 562
Hpy188III	TCNNGA	5 cut(s)	343, 455, 479, 545, 672
Hpy8I	GTNNAC	2 cut(s)	217, 295
HpyAV	CCTTC	2 cut(s)	131, 611
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	3 cut(s)	305, 421, 719
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	548, 741, 794
Kpn2I	TCCGGA	2 cut(s)	342, 454
Kzo9I	GATC	5 cut(s)	243, 451, 465, 533, 730
LmnI	GCTCC	2 cut(s)	146, 242
Lsp1109I	GCAGC	2 cut(s)	64, 153
LweI	GCATC	2 cut(s)	553, 820
MaeI	CTAG	3 cut(s)	105, 225, 431
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	5 cut(s)	245, 453, 467, 535, 732
MboI	GATC	5 cut(s)	243, 451, 465, 533, 730
MboII	GAAGA	7 cut(s)	81, 115, 140, 146, 293, 367, 667
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	725
MluCI	AATT	3 cut(s)	502, 667, 753
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	257, 263, 456, 541, 744
MroI	TCCGGA	2 cut(s)	342, 454
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	687, 744
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	6 cut(s)	206, 212, 256, 270, 343, 455
MspR9I	CCNGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	2 cut(s)	737, 790
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	243, 451, 465, 533, 730
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	3 cut(s)	548, 741, 794
NlaIV	GGNNCC	2 cut(s)	210, 238
NmuCI	GTSAC	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	126
PagI	TCATGA	1 cut(s)	544
PaqCI	CACCTGC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	116, 202
PkrI	GCNGC	3 cut(s)	79, 97, 143
Ppu21I	YACGTR	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	210, 238
PspPI	GGNCC	2 cut(s)	209, 527
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	2 cut(s)	492, 833
RsaNI	GTAC	2 cut(s)	491, 832
SaqAI	TTAA	2 cut(s)	687, 744
SatI	GCNGC	3 cut(s)	78, 96, 142
Sau3AI	GATC	5 cut(s)	243, 451, 465, 533, 730
Sau96I	GGNCC	2 cut(s)	209, 527
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	725
SetI	ASST	9 cut(s)	110, 151, 230, 427, 436, 510, 571, 712, 808
SfaNI	GCATC	2 cut(s)	553, 820
SfuI	TTCGAA	1 cut(s)	126
SinI	GGWCC	2 cut(s)	209, 527
SmlI	CTYRAG	2 cut(s)	164, 769
SmoI	CTYRAG	2 cut(s)	164, 769
Sse9I	AATT	3 cut(s)	502, 667, 753
SsiI	CCGC	4 cut(s)	26, 96, 144, 279
SspMI	CTAG	3 cut(s)	105, 225, 431
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	104, 737, 790
TaaI	ACNGT	1 cut(s)	474
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	502, 667, 753
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	116, 202
Tru1I	TTAA	2 cut(s)	687, 744
Tru9I	TTAA	2 cut(s)	687, 744
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	77, 141
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	5 cut(s)	17, 147, 220, 720, 746
TspGWI	ACGGA	2 cut(s)	229, 534
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	2 cut(s)	209, 527
XapI	RAATTY	2 cut(s)	667, 753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XmaJI	CCTAGG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	3 cut(s)	105, 225, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.