Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Forward (+)

63768222 .. 63769731

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCGGGAAGTGCTCGGAAAACCCCGCCGCCTCCAAACTCCGGATCACCATCATATGAAGGCGTTTCGTCTCCTATTTCCGCCGTTCAACAAACCAAGTCCGAAACCGCCTTTATTTATTCAAAGGCTCACCGCCTATTCGTCTTCAGCCGCTAACCCTAGGTTTTCCGATTCTTTCTTCGAAGATGAAGAAGGCAGCGGAGTTTACCAGCACAAACTCAAGTTCCAGCGTCCCACCACAATCCAACGGCGACAGAATCCGGGTCCGGTCAACTCTGCTAGCTTCATTGGCTCCGTGATCCTCCCCCTCCGGGTCGCAAACACCGGCCACGGCGGTCGTTTTGGCGTTCACACTCTTCTCAGCGTCAGAAATTGCCCCCAGTCTGATAGCAGTTTCCGGATATTACTGAAGATGTGGGACGAGATGGCAGTATTGTCTTTCAAACATTTGAAACCAAATGATTTTATTTATGTCTCAGGTCATCTAGGTTCTTACACAAAGAATGATCCGGATGGGAGGATCACACTGTATCACGAGTTAGTTGTACAGGAGTTGAATTACGTGGCACAAAACGGACCAGGACCAAGATCTGAAAATCATGAGGAACCACAGTCTGATGCAGGTGAAACTGGTTTGGAGAAGTGTAGGGAACGCCTTCACTTATGGCAAGTATTTTTTGCCAGTCCATATGATTGGTGGGATAACAGGAAGACAAAGTTGAATTCAAGACGACCAGATTTTAAGCACAAGTATATGGATGAAGCTCTCTGGCTGAGCCAAGATGATCCTCCATGGATTAAAAAACAAATTCATCGGCTTGACTTGAGAATGGCAGAACAAGGCCATGGCGAACAAGTAGGTCAGCATCGTCGTATCTCCAAGTGGGAGTACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

299

Amino Acids

34.82

Weight (kDa)

9.31

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	611
AccIII	TCCGGA	3 cut(s)	40, 396, 508
AciI	CCGC	9 cut(s)	4, 25, 28, 80, 107, 132, 150, 198, 333
AclWI	GGATC	5 cut(s)	51, 292, 500, 527, 779
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	721, 807
AcuI	CTGAAG	2 cut(s)	129, 428
AfaI	GTAC	2 cut(s)	546, 890
AfiI	CCNNNNNNNGG	2 cut(s)	40, 310
AgsI	TTSAA	7 cut(s)	88, 122, 442, 451, 556, 721, 726
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	2 cut(s)	282, 764
AluI	AGCT	2 cut(s)	282, 764
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	74, 478
AlwI	GGATC	5 cut(s)	51, 292, 500, 527, 779
Aor13HI	TCCGGA	3 cut(s)	40, 396, 508
AoxI	GGCC	2 cut(s)	325, 841
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	721, 807
Asp700I	GAANNNNTTC	1 cut(s)	654
AspA2I	CCTAGG	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	263, 575, 581
AsuC2I	CCSGG	2 cut(s)	261, 311
AsuHPI	GGTGA	3 cut(s)	38, 121, 635
AsuII	TTCGAA	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	263, 575, 581
AvrII	CCTAGG	1 cut(s)	158
BauI	CACGAG	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	135, 716
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	3 cut(s)	57, 418, 506
BceAI	ACGGC	3 cut(s)	67, 263, 346
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	261, 311
BcoDI	GTCTC	2 cut(s)	74, 478
BfaI	CTAG	3 cut(s)	159, 279, 485
BfuAI	ACCTGC	1 cut(s)	611
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	28, 150, 196
BlnI	CCTAGG	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	3 cut(s)	29, 151, 197
Bme1390I	CCNGG	3 cut(s)	261, 311, 579
Bme18I	GGWCC	3 cut(s)	263, 575, 581
BmgT120I	GGNCC	3 cut(s)	263, 575, 581
BmiI	GGNNCC	3 cut(s)	264, 292, 606
BmrFI	CCNGG	3 cut(s)	261, 311, 579
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	607, 874
BmtI	GCTAGC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	135, 716
Bpu1102I	GCTNAGC	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	203, 844
BpuMI	CCSGG	2 cut(s)	261, 311
BsaAI	YACGTR	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	158, 328, 791, 844
BsaWI	WCCGGW	4 cut(s)	40, 265, 396, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 310
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	379, 634, 681
Bse8I	GATNNNNATC	1 cut(s)	48
BseAI	TCCGGA	3 cut(s)	40, 396, 508
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	4 cut(s)	158, 328, 791, 844
BseGI	GGATG	2 cut(s)	517, 763
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	40, 310
BseMII	CTCAG	3 cut(s)	373, 489, 764
BseNI	ACTGG	3 cut(s)	379, 634, 681
BseXI	GCAGC	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	327, 843
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	7 cut(s)	41, 260, 266, 310, 324, 397, 509
BslFI	GGGAC	2 cut(s)	216, 431
BslI	CCNNNNNNNGG	2 cut(s)	40, 310
BsmAI	GTCTC	2 cut(s)	74, 478
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	216, 431
BsnI	GGCC	2 cut(s)	327, 843
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	3 cut(s)	40, 396, 508
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
Bsp1720I	GCTNAGC	1 cut(s)	773
Bsp19I	CCATGG	2 cut(s)	791, 844
BspACI	CCGC	9 cut(s)	4, 25, 28, 80, 107, 132, 150, 198, 333
BspANI	GGCC	2 cut(s)	327, 843
BspCNI	CTCAG	3 cut(s)	372, 488, 765
BspEI	TCCGGA	3 cut(s)	40, 396, 508
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	264, 292, 606
BspMI	ACCTGC	1 cut(s)	611
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	5 cut(s)	51, 292, 500, 527, 779
BspT104I	TTCGAA	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	379, 634, 681
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	4 cut(s)	158, 328, 791, 844
BssMI	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
BssSI	CACGAG	1 cut(s)	533
BssT1I	CCWWGG	3 cut(s)	158, 791, 844
Bst2BI	CACGAG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	2 cut(s)	528, 612
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	562
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	359, 475, 773
BstDSI	CCRYGG	3 cut(s)	328, 791, 844
BstF5I	GGATG	2 cut(s)	517, 763
BstKTI	GATC	6 cut(s)	46, 300, 508, 522, 590, 787
BstMAI	GTCTC	2 cut(s)	74, 478
BstMBI	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 288
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	3 cut(s)	259, 309, 577
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	2 cut(s)	135, 716
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	327, 843
BtgI	CCRYGG	3 cut(s)	328, 791, 844
BtsCI	GGATG	2 cut(s)	517, 763
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	263, 575, 581
CseI	GACGC	2 cut(s)	218, 352
Csp6I	GTAC	2 cut(s)	545, 889
CviAII	CATG	3 cut(s)	599, 792, 845
CviQI	GTAC	2 cut(s)	545, 889
DdeI	CTNAG	3 cut(s)	359, 475, 773
DpnI	GATC	6 cut(s)	45, 299, 507, 521, 589, 786
DpnII	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	158, 791, 844
Eco47I	GGWCC	3 cut(s)	263, 575, 581
Eco57I	CTGAAG	2 cut(s)	129, 428
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	3 cut(s)	158, 791, 844
ErhI	CCWWGG	3 cut(s)	158, 791, 844
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	602, 795, 848
FaqI	GGGAC	2 cut(s)	216, 431
FatI	CATG	3 cut(s)	598, 791, 844
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	2 cut(s)	54, 688
Fnu4HI	GCNGC	3 cut(s)	28, 150, 196
FokI	GGATG	2 cut(s)	524, 770
Fsp4HI	GCNGC	3 cut(s)	28, 150, 196
FspBI	CTAG	3 cut(s)	159, 279, 485
GluI	GCNGC	3 cut(s)	28, 150, 196
HaeIII	GGCC	2 cut(s)	327, 843
HapII	CCGG	7 cut(s)	41, 260, 266, 310, 324, 397, 509
HgaI	GACGC	2 cut(s)	218, 352
Hin1II	CATG	3 cut(s)	602, 795, 848
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	170, 256
HpaII	CCGG	7 cut(s)	41, 260, 266, 310, 324, 397, 509
HphI	GGTGA	3 cut(s)	38, 121, 635
Hpy166II	GTNNAC	3 cut(s)	205, 271, 349
Hpy188I	TCNGA	7 cut(s)	17, 102, 169, 368, 385, 592, 616
Hpy188III	TCNNGA	6 cut(s)	41, 397, 509, 533, 599, 726
Hpy8I	GTNNAC	3 cut(s)	205, 271, 349
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	3 cut(s)	52, 185, 665
HpyCH4III	ACNGT	2 cut(s)	528, 612
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 288
HpyF3I	CTNAG	3 cut(s)	359, 475, 773
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	602, 795, 848
Kpn2I	TCCGGA	3 cut(s)	40, 396, 508
Kzo9I	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	607, 874
MaeI	CTAG	3 cut(s)	159, 279, 485
MaeII	ACGT	1 cut(s)	561
MalI	GATC	6 cut(s)	45, 299, 507, 521, 589, 786
MboI	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
MboII	GAAGA	7 cut(s)	135, 169, 194, 200, 347, 421, 721
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	370, 556, 721, 807
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	6 cut(s)	41, 311, 317, 510, 595, 798
MroI	TCCGGA	3 cut(s)	40, 396, 508
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	741, 798
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	7 cut(s)	41, 260, 266, 310, 324, 397, 509
MspR9I	CCNGG	3 cut(s)	261, 311, 579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	10, 288
NciI	CCSGG	2 cut(s)	261, 311
NcoI	CCATGG	2 cut(s)	791, 844
NdeI	CATATG	2 cut(s)	54, 688
NdeII	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	602, 795, 848
NlaIV	GGNNCC	3 cut(s)	264, 292, 606
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	611
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	170, 256
PkrI	GCNGC	3 cut(s)	29, 151, 197
Ppu21I	YACGTR	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	264, 292, 606
PspPI	GGNCC	3 cut(s)	263, 575, 581
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	2 cut(s)	546, 890
RsaNI	GTAC	2 cut(s)	545, 889
SaqAI	TTAA	2 cut(s)	741, 798
SatI	GCNGC	3 cut(s)	28, 150, 196
Sau3AI	GATC	6 cut(s)	43, 297, 505, 519, 587, 784
Sau96I	GGNCC	3 cut(s)	263, 575, 581
ScrFI	CCNGG	3 cut(s)	261, 311, 579
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	164, 284, 481, 490, 564, 625, 766, 862
SfaNI	GCATC	2 cut(s)	607, 874
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	3 cut(s)	263, 575, 581
SmlI	CTYRAG	2 cut(s)	218, 823
SmoI	CTYRAG	2 cut(s)	218, 823
Sse9I	AATT	4 cut(s)	370, 556, 721, 807
SsiI	CCGC	9 cut(s)	4, 25, 28, 80, 107, 132, 150, 198, 333
SspMI	CTAG	3 cut(s)	159, 279, 485
StyD4I	CCNGG	3 cut(s)	259, 309, 577
StyI	CCWWGG	3 cut(s)	158, 791, 844
TaaI	ACNGT	2 cut(s)	528, 612
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	180
TasI	AATT	4 cut(s)	370, 556, 721, 807
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	2 cut(s)	30, 152
TfiI	GAWTC	2 cut(s)	170, 256
Tru1I	TTAA	2 cut(s)	741, 798
Tru9I	TTAA	2 cut(s)	741, 798
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	5 cut(s)	71, 201, 274, 774, 800
TspGWI	ACGGA	2 cut(s)	283, 588
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	3 cut(s)	263, 575, 581
XapI	RAATTY	2 cut(s)	721, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmaJI	CCTAGG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	159, 279, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.