Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Forward (+)

60867149 .. 60869146

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAGGCATTTCGTCTCCTATTTCCGCCGTTCAACAAACCAAGTCCGAAATCGCCTTTATTTATTCAAAGGCGGCGGCTCGCCGCCTATTCGTCTTCAGCCGCTAGCCCTAGGTTTTCCGATTCTTTCTTCGAAGATGAAGAAGGCAGCGGAGTTTACCAGCACAAACTCAAGTTCCAGCGTCCCACCACAATCCAACGGCGACAGAATCCGGGTCCGGTCAACTCTGCTAGCTTCATTGGCTCCGTGATCCTCCCCCTCAGGGTCGCAAACACCTGCCACGGTGGTCGTTTTGGCGTTCACACTCTTCTCAGCGTCAGAAATTGCCCCCAGTCTGATTGCAGTTTCCGGATATTACTGAAGATGTGGGACGAGATGGCAGTATTGTCTTTCAAACATTTGAAACCAAATGATTTTATTTATGTCTCAGGTCATCTAGGTTCTTACACAAAGAATGATCCGGATGGGAGGATCACACTGTATCACGAGTTGGTTGTGCAGGAGTTGAATTACGTGGCACAAAACAGACAAGGACCAAGATCTGAAAATCATGAGGAACCACAATCTGATGCAGGTGAAACTGGTTTGGAGAAGTGTAGGGAACGCCTTCACTTATGGCAAGTATTTTTTGCCAATCCATATGATTGGTGGGATAACAGGAAGACAAAGTTGAATTCAAGACGACCAGATTTTAAGCACAAGTATATGGATGAAGCTCTCTGGCTGAGACCAGATGATCCTCCATGGATTAAAAAACAAATTCATCGGCTTGACTTGAGAATGGCAGAACAAGGCCATGGCAAACAAGTAGGTCAGCATCGTCGTATCTCCAAGTGGGAGTACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

283

Amino Acids

33.14

Weight (kDa)

9.53

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	284, 563
Acc36I	ACCTGC	2 cut(s)	284, 563
AccIII	TCCGGA	2 cut(s)	348, 460
AciI	CCGC	6 cut(s)	26, 73, 76, 84, 102, 150
AclWI	GGATC	4 cut(s)	244, 452, 479, 731
AcsI	RAATTY	2 cut(s)	673, 759
AcuI	CTGAAG	2 cut(s)	81, 380
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	7 cut(s)	34, 68, 394, 403, 508, 673, 678
AluBI	AGCT	2 cut(s)	234, 716
AluI	AGCT	2 cut(s)	234, 716
Alw26I	GTCTC	3 cut(s)	20, 430, 721
AlwI	GGATC	4 cut(s)	244, 452, 479, 731
Aor13HI	TCCGGA	2 cut(s)	348, 460
AoxI	GGCC	1 cut(s)	793
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	673, 759
Asp700I	GAANNNNTTC	1 cut(s)	606
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	215, 533
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	132
AsuNHI	GCTAGC	2 cut(s)	104, 230
AvaII	GGWCC	2 cut(s)	215, 533
AvrII	CCTAGG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	260
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	87, 668
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	370, 458
BceAI	ACGGC	2 cut(s)	13, 215
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	20, 430, 721
BfaI	CTAG	4 cut(s)	105, 111, 231, 437
BfuAI	ACCTGC	2 cut(s)	284, 563
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	5 cut(s)	74, 77, 84, 102, 148
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	5 cut(s)	75, 78, 85, 103, 149
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	215, 533
BmgT120I	GGNCC	2 cut(s)	215, 533
BmiI	GGNNCC	3 cut(s)	216, 244, 558
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	559, 826
BmtI	GCTAGC	2 cut(s)	108, 234
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	2 cut(s)	87, 668
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	155, 796
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	4 cut(s)	110, 280, 743, 796
BsaWI	WCCGGW	3 cut(s)	217, 348, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	331, 586
Bse21I	CCTNAGG	1 cut(s)	260
BseAI	TCCGGA	2 cut(s)	348, 460
BseDI	CCNNGG	4 cut(s)	110, 280, 743, 796
BseGI	GGATG	2 cut(s)	469, 715
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	4 cut(s)	274, 325, 441, 716
BseNI	ACTGG	2 cut(s)	331, 586
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	795
BsiSI	CCGG	4 cut(s)	212, 218, 349, 461
BslFI	GGGAC	2 cut(s)	168, 383
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	3 cut(s)	20, 430, 721
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	168, 383
BsnI	GGCC	1 cut(s)	795
Bso31I	GGTCTC	1 cut(s)	721
Bsp119I	TTCGAA	1 cut(s)	132
Bsp13I	TCCGGA	2 cut(s)	348, 460
Bsp143I	GATC	5 cut(s)	249, 457, 471, 539, 736
Bsp19I	CCATGG	2 cut(s)	743, 796
BspACI	CCGC	6 cut(s)	26, 73, 76, 84, 102, 150
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	4 cut(s)	273, 324, 440, 717
BspEI	TCCGGA	2 cut(s)	348, 460
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	216, 244, 558
BspMI	ACCTGC	2 cut(s)	284, 563
BspOI	GCTAGC	2 cut(s)	108, 234
BspPI	GGATC	4 cut(s)	244, 452, 479, 731
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	331, 586
BssECI	CCNNGG	4 cut(s)	110, 280, 743, 796
BssMI	GATC	5 cut(s)	249, 457, 471, 539, 736
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	3 cut(s)	110, 743, 796
Bst2BI	CACGAG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	284, 480
Bst6I	CTCTTC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	81, 106, 232
BstDEI	CTNAG	4 cut(s)	260, 311, 427, 725
BstDSI	CCRYGG	3 cut(s)	280, 743, 796
BstF5I	GGATG	2 cut(s)	469, 715
BstKTI	GATC	5 cut(s)	252, 460, 474, 542, 739
BstMAI	GTCTC	3 cut(s)	20, 430, 721
BstMBI	GATC	5 cut(s)	249, 457, 471, 539, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	2 cut(s)	87, 668
BstX2I	RGATCY	1 cut(s)	539
BstXI	CCANNNNNNTGG	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	539
Bsu36I	CCTNAGG	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	795
BtgI	CCRYGG	3 cut(s)	280, 743, 796
BtsCI	GGATG	2 cut(s)	469, 715
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	2 cut(s)	284, 563
Cac8I	GCNNGC	3 cut(s)	81, 106, 232
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	215, 533
CseI	GACGC	2 cut(s)	170, 304
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	3 cut(s)	551, 744, 797
CviJI	RGCY	9 cut(s)	79, 101, 108, 234, 243, 716, 724, 769, 795
CviKI_1	RGCY	9 cut(s)	79, 101, 108, 234, 243, 716, 724, 769, 795
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	4 cut(s)	260, 311, 427, 725
DpnI	GATC	5 cut(s)	251, 459, 473, 541, 738
DpnII	GATC	5 cut(s)	249, 457, 471, 539, 736
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	110, 743, 796
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	215, 533
Eco57I	CTGAAG	2 cut(s)	81, 380
Eco81I	CCTNAGG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	673
EcoT14I	CCWWGG	3 cut(s)	110, 743, 796
ErhI	CCWWGG	3 cut(s)	110, 743, 796
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	3 cut(s)	554, 747, 800
FaiI	YATR	9 cut(s)	423, 552, 616, 640, 642, 705, 707, 745, 798
FaqI	GGGAC	2 cut(s)	168, 383
FatI	CATG	3 cut(s)	550, 743, 796
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	5 cut(s)	74, 77, 84, 102, 148
FokI	GGATG	2 cut(s)	476, 722
Fsp4HI	GCNGC	5 cut(s)	74, 77, 84, 102, 148
FspBI	CTAG	4 cut(s)	105, 111, 231, 437
GluI	GCNGC	5 cut(s)	74, 77, 84, 102, 148
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	4 cut(s)	212, 218, 349, 461
HgaI	GACGC	2 cut(s)	170, 304
Hin1II	CATG	3 cut(s)	554, 747, 800
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	122, 208
HpaII	CCGG	4 cut(s)	212, 218, 349, 461
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	157, 223, 301
Hpy188I	TCNGA	6 cut(s)	48, 121, 320, 337, 544, 568
Hpy188III	TCNNGA	5 cut(s)	349, 461, 485, 551, 678
Hpy8I	GTNNAC	3 cut(s)	157, 223, 301
Hpy99I	CGWCG	1 cut(s)	825
HpyAV	CCTTC	2 cut(s)	137, 617
HpyCH4III	ACNGT	2 cut(s)	284, 480
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	3 cut(s)	342, 499, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	4 cut(s)	260, 311, 427, 725
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	554, 747, 800
Kpn2I	TCCGGA	2 cut(s)	348, 460
Kzo9I	GATC	5 cut(s)	249, 457, 471, 539, 736
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	559, 826
MaeI	CTAG	4 cut(s)	105, 111, 231, 437
MaeII	ACGT	1 cut(s)	513
MalI	GATC	5 cut(s)	251, 459, 473, 541, 738
MboI	GATC	5 cut(s)	249, 457, 471, 539, 736
MboII	GAAGA	7 cut(s)	87, 121, 146, 152, 299, 373, 673
MflI	RGATCY	1 cut(s)	539
MluCI	AATT	4 cut(s)	322, 508, 673, 759
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	263, 269, 462, 547, 750
MroI	TCCGGA	2 cut(s)	348, 460
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	2 cut(s)	693, 750
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	4 cut(s)	212, 218, 349, 461
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	2 cut(s)	743, 796
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	5 cut(s)	249, 457, 471, 539, 736
NheI	GCTAGC	2 cut(s)	104, 230
NlaIII	CATG	3 cut(s)	554, 747, 800
NlaIV	GGNNCC	3 cut(s)	216, 244, 558
NspV	TTCGAA	1 cut(s)	132
PagI	TCATGA	1 cut(s)	550
PaqCI	CACCTGC	2 cut(s)	284, 563
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	2 cut(s)	122, 208
PkrI	GCNGC	5 cut(s)	75, 78, 85, 103, 149
Ppu21I	YACGTR	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	216, 244, 558
PspPI	GGNCC	2 cut(s)	215, 533
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	693, 750
SatI	GCNGC	5 cut(s)	74, 77, 84, 102, 148
Sau3AI	GATC	5 cut(s)	249, 457, 471, 539, 736
Sau96I	GGNCC	2 cut(s)	215, 533
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	9 cut(s)	116, 236, 278, 433, 442, 516, 577, 718, 814
SfaNI	GCATC	2 cut(s)	559, 826
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	2 cut(s)	215, 533
SmlI	CTYRAG	2 cut(s)	170, 775
SmoI	CTYRAG	2 cut(s)	170, 775
Sse9I	AATT	4 cut(s)	322, 508, 673, 759
SsiI	CCGC	6 cut(s)	26, 73, 76, 84, 102, 150
SspMI	CTAG	4 cut(s)	105, 111, 231, 437
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	3 cut(s)	110, 743, 796
TaaI	ACNGT	2 cut(s)	284, 480
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	322, 508, 673, 759
TauI	GCSGC	4 cut(s)	76, 79, 86, 104
TfiI	GAWTC	2 cut(s)	122, 208
Tru1I	TTAA	2 cut(s)	693, 750
Tru9I	TTAA	2 cut(s)	693, 750
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	5 cut(s)	17, 153, 226, 726, 752
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	215, 533
XapI	RAATTY	2 cut(s)	673, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmaJI	CCTAGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	4 cut(s)	105, 111, 231, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.