Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009200

Physical Location & Seq

Genomic Coordinates Reverse (-)

34787496 .. 34790440

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G389600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGGCGCTTCATCTTCTAACCCAGTTTAGGAAGCCAAGTCCCTCGCTATTGTTCTCGCAAAGGCTCGCCCTTTTATCTTCGTCTTCAGCCGCTAACCCTAGGGTTTCAAATTCCTTTTCCGACGACGACCGAGAAGGCAGCGGCGTTTATCGGCGCGCACTCAAGTTCCAGCGTCCAACGACAATCACATGGCGTCGTCGGGAAGAGAGTCTGGGCAACTCTGATAGCTTTATTGGCACTGTATGGCATCCTTGGCAAGAGAATCTGGGCAACTCTACTAGCTTTATCGGCACTGTATGGCATCCTTGGCAAGAGAATCTGGGCAACTCTGCTAGCTTTATCGGCACTGTATGGCATCCTTGGCAAGAGAATCTGGGCAACTCTGCTAGCTTTATCGGCACTGTGATTCACCCCCTTCGGGTCGTAAACAACAACGACCGTGGTCCGTTTGGCGTTCACACTGTTCTTTGCGTCAAAAACTCCCCTCAATCTGACAGCAATTTTAGGATACTACTGATGATGTGGGGCGAGATGGCAGAATTGTCTTTCAAACATTTGAAACAGAATGATTTTATTTATGTCTCAGGTTGTTTAGGTTCTTACACAAAGGCGGATCAGAATGGGGATTCCAGACTGCATCACCAGTTAGTAGTGCAGGAGTTGAATTATGTAGCACAACATGGACAAGGATCAAGCTCCAAAACTTATGAGGAACCACAATCTGATGGAGGTGGAGCTGTTTCAGAGAAGTATAAGGATCGCCTTCACTTGTGGCAAGTGTTTTTTGCCAATCCGTATGAATGGTGGGATAACAGGGAAGACAAGTTGAATCCAAGGCAACCAGATTTTAAGCACAAGGATACTGGTGAAGCTCTCTGGCTGTCGCCAGGTGATCCTCCATGGATTAAAAGACAACTCGAATTGCTTGACACGAGAATGGCACAACAAGGGCACGGCCAAAAACGTTTCCGTGTCTCCAAGTGGGAGTATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

334

Amino Acids

38.26

Weight (kDa)

7.85

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47720
fragaria_vesca	FvH4_2g40730
malus_domestica	MD15G1035700.v1.1
prunus_persica	Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1 Prupe.1G389600_v2.0.a1
pyrus_communis	pycom15g03300
rosa_chinensis	RchiOBHm_Chr6g0299861
rosa_laevigata	RLG00000011380
rosa_multiflora	Rmu_ssc0000158.1_g000010
rosa_roxburghii	Rroxscaffold_7G00168320
rosa_rugosa	Rorug06G0292700
rosa_samantha	Rh6AG404100 Rh6BG412400 Rh6CG418400 Rh6DG405300
rosa_wichuraiana	Rw6G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	3 cut(s)	93, 144, 614
AclI	AACGTT	1 cut(s)	967
AclWI	GGATC	4 cut(s)	624, 700, 768, 890
AcoI	YGGCCR	1 cut(s)	958
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	30, 421
AgsI	TTSAA	5 cut(s)	111, 553, 562, 667, 832
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	7 cut(s)	231, 285, 339, 393, 699, 740, 875
AluI	AGCT	7 cut(s)	231, 285, 339, 393, 699, 740, 875
Alw26I	GTCTC	2 cut(s)	589, 982
AlwI	GGATC	4 cut(s)	624, 700, 768, 890
AoxI	GGCC	1 cut(s)	958
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	112
AspA2I	CCTAGG	1 cut(s)	101
AspLEI	GCGC	3 cut(s)	10, 159, 161
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	4 cut(s)	404, 635, 881, 905
AsuNHI	GCTAGC	2 cut(s)	335, 389
AvaII	GGWCC	1 cut(s)	446
AvrII	CCTAGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	934
BbsI	GAAGAC	2 cut(s)	78, 828
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	529, 722
BceAI	ACGGC	1 cut(s)	973
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	2 cut(s)	504, 856
BcoDI	GTCTC	2 cut(s)	589, 982
BfaI	CTAG	4 cut(s)	102, 282, 336, 390
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	2 cut(s)	504, 856
BisI	GCNGC	3 cut(s)	93, 142, 145
BlnI	CCTAGG	1 cut(s)	101
BlsI	GCNGC	3 cut(s)	94, 143, 146
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	891
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	4 cut(s)	259, 313, 367, 649
BmtI	GCTAGC	2 cut(s)	339, 393
BmuI	ACTGGG	1 cut(s)	19
BoxI	GACNNNNGTC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	78, 828
BpuEI	CTTGAG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	7 cut(s)	101, 254, 308, 362, 442, 836, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 421
Bse1I	ACTGG	3 cut(s)	25, 646, 871
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	7 cut(s)	101, 254, 308, 362, 442, 836, 902
BseGI	GGATG	3 cut(s)	250, 304, 358
BseLI	CCNNNNNNNGG	2 cut(s)	30, 421
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	3 cut(s)	25, 646, 871
BsePI	GCGCGC	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	957
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	677
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	2 cut(s)	133, 442
BshFI	GGCC	1 cut(s)	960
BsiEI	CGRYCG	2 cut(s)	133, 442
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	30, 421
BsmAI	GTCTC	2 cut(s)	589, 982
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	960
Bsp1286I	GDGCHC	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	616, 692, 760, 895
Bsp19I	CCATGG	1 cut(s)	902
BspACI	CCGC	3 cut(s)	93, 144, 614
BspANI	GGCC	1 cut(s)	960
BspCNI	CTCAG	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	717
BspOI	GCTAGC	2 cut(s)	339, 393
BspPI	GGATC	4 cut(s)	624, 700, 768, 890
BsrI	ACTGG	3 cut(s)	25, 646, 871
BssECI	CCNNGG	7 cut(s)	101, 254, 308, 362, 442, 836, 902
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	4 cut(s)	616, 692, 760, 895
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	934
BssT1I	CCWWGG	6 cut(s)	101, 254, 308, 362, 836, 902
Bst2BI	CACGAG	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	6 cut(s)	244, 298, 352, 406, 443, 466
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	69, 159, 337, 391
BstDEI	CTNAG	1 cut(s)	586
BstDSI	CCRYGG	2 cut(s)	442, 902
BstF5I	GGATG	3 cut(s)	250, 304, 358
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 159, 161
BstKTI	GATC	4 cut(s)	619, 695, 763, 898
BstMAI	GTCTC	2 cut(s)	589, 982
BstMBI	GATC	4 cut(s)	616, 692, 760, 895
BstMCI	CGRYCG	2 cut(s)	133, 442
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 256, 291, 310, 345, 364, 399
BstNI	CCWGG	1 cut(s)	891
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	889
BstSLI	GKGCMC	1 cut(s)	957
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	2 cut(s)	78, 828
BsuI	GTATCC	2 cut(s)	504, 856
BsuRI	GGCC	1 cut(s)	960
BtgI	CCRYGG	2 cut(s)	442, 902
BtsCI	GGATG	3 cut(s)	250, 304, 358
BtsIMutI	CAGTG	5 cut(s)	240, 294, 348, 402, 462
Cac8I	GCNNGC	4 cut(s)	69, 159, 337, 391
CfoI	GCGC	3 cut(s)	10, 159, 161
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	3 cut(s)	164, 185, 463
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	192, 683, 903
DdeI	CTNAG	1 cut(s)	586
DpnI	GATC	4 cut(s)	618, 694, 762, 897
DpnII	GATC	4 cut(s)	616, 692, 760, 895
EaeI	YGGCCR	1 cut(s)	958
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	629
Eco130I	CCWWGG	6 cut(s)	101, 254, 308, 362, 836, 902
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	889
EcoT14I	CCWWGG	6 cut(s)	101, 254, 308, 362, 836, 902
ErhI	CCWWGG	6 cut(s)	101, 254, 308, 362, 836, 902
FaeI	CATG	3 cut(s)	195, 686, 906
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	191, 682, 902
Fnu4HI	GCNGC	3 cut(s)	93, 142, 145
FokI	GGATG	3 cut(s)	237, 291, 345
Fsp4HI	GCNGC	3 cut(s)	93, 142, 145
FspBI	CTAG	4 cut(s)	102, 282, 336, 390
GlaI	GCGC	3 cut(s)	9, 158, 160
GluI	GCNGC	3 cut(s)	93, 142, 145
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	960
HgaI	GACGC	3 cut(s)	164, 185, 463
HhaI	GCGC	3 cut(s)	10, 159, 161
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	195, 686, 906
Hin6I	GCGC	3 cut(s)	8, 157, 159
HinP1I	GCGC	3 cut(s)	8, 157, 159
HinfI	GANTC	7 cut(s)	211, 265, 319, 373, 409, 629, 832
HphI	GGTGA	4 cut(s)	404, 635, 881, 905
Hpy166II	GTNNAC	2 cut(s)	430, 460
Hpy188I	TCNGA	6 cut(s)	124, 226, 496, 621, 727, 748
Hpy188III	TCNNGA	2 cut(s)	203, 633
Hpy8I	GTNNAC	2 cut(s)	430, 460
Hpy99I	CGWCG	4 cut(s)	128, 131, 201, 204
HpyAV	CCTTC	3 cut(s)	131, 428, 776
HpyCH4III	ACNGT	6 cut(s)	244, 298, 352, 406, 443, 466
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	2 cut(s)	640, 658
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 256, 291, 310, 345, 364, 399
HpyF3I	CTNAG	1 cut(s)	586
HpySE526I	ACGT	1 cut(s)	967
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	195, 686, 906
HspAI	GCGC	3 cut(s)	8, 157, 159
Kzo9I	GATC	4 cut(s)	616, 692, 760, 895
LmnI	GCTCC	2 cut(s)	704, 737
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	4 cut(s)	259, 313, 367, 649
MaeI	CTAG	4 cut(s)	102, 282, 336, 390
MaeII	ACGT	1 cut(s)	967
MalI	GATC	4 cut(s)	618, 694, 762, 897
MboI	GATC	4 cut(s)	616, 692, 760, 895
MboII	GAAGA	5 cut(s)	8, 72, 78, 218, 833
MhlI	GDGCHC	1 cut(s)	957
MluCI	AATT	5 cut(s)	112, 502, 542, 667, 923
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	2 cut(s)	147, 203
MnlI	CCTC	5 cut(s)	55, 498, 706, 725, 909
MseI	TTAA	2 cut(s)	852, 909
MslI	CAYNNNNRTG	1 cut(s)	938
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	7 cut(s)	237, 256, 291, 310, 345, 364, 399
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	4 cut(s)	616, 692, 760, 895
NheI	GCTAGC	2 cut(s)	335, 389
NlaIII	CATG	3 cut(s)	195, 686, 906
NlaIV	GGNNCC	1 cut(s)	717
PauI	GCGCGC	1 cut(s)	157
PfeI	GAWTC	6 cut(s)	265, 319, 373, 409, 629, 832
PkrI	GCNGC	3 cut(s)	94, 143, 146
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PshAI	GACNNNNGTC	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	967
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	446
PteI	GCGCGC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	938
SaqAI	TTAA	2 cut(s)	852, 909
SatI	GCNGC	3 cut(s)	93, 142, 145
Sau3AI	GATC	4 cut(s)	616, 692, 760, 895
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	1 cut(s)	957
SfaNI	GCATC	4 cut(s)	259, 313, 367, 649
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	938
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	112, 502, 542, 667, 923
SsiI	CCGC	3 cut(s)	93, 144, 614
SspMI	CTAG	4 cut(s)	102, 282, 336, 390
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	6 cut(s)	101, 254, 308, 362, 836, 902
TaaI	ACNGT	6 cut(s)	244, 298, 352, 406, 443, 466
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	1 cut(s)	921
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	5 cut(s)	112, 502, 542, 667, 923
TauI	GCSGC	2 cut(s)	95, 147
TfiI	GAWTC	6 cut(s)	265, 319, 373, 409, 629, 832
Tru1I	TTAA	2 cut(s)	852, 909
Tru9I	TTAA	2 cut(s)	852, 909
TscAI	CASTG	5 cut(s)	247, 301, 355, 409, 469
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	17, 816
TspGWI	ACGGA	3 cut(s)	438, 786, 962
TspRI	CASTG	5 cut(s)	247, 301, 355, 409, 469
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	101
XspI	CTAG	4 cut(s)	102, 282, 336, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.