AT1G47870

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006598
Physical Location & Seq
Forward (+)
17634697 .. 17637809
3113 bp
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UTR
Exon/CDS
Intron
AT1G47870.1

Sequence Viewer

Length: 1191 bp
ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTCTTACCATCACCGATCTCCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATCCTCGTTACTCTTCTCTAACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTGTCTCCTCTAATTTCACCTCACTGGGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAGAAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAAAGCATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGTGTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTGGGAAACGAATGGCGAATGGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCTTTAGGGTTGTTGACAAAAAAATTCGTGAAGTTGATCCAGGAAGCTGAGGATGGAACACTTGACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACAAATGTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAGGGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTTCTAGGCTTAAGTCAGAAGTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAAGCTCTCAGATCCTTGGAGGAAGATGACTACTGTAGAAGGTACATGTTTATGACGGAGGAAGATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACAGCTAGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAACAGTACCGGATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAAGCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAAAAAGCTCCAGTTGGAGTAGACACTCCTTCCTTGAAAATAGTAACTTCAGATACTGATTTAAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAACTTCAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

396

Amino Acids

44.49

Weight (kDa)

5.74

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 157 - 220 7.9e-27 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 236 - 334 7.1e-28 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 735
AccI GTMKAC 2 cut(s) 360, 1077
AccII CGCG 1 cut(s) 8
AciI CCGC 4 cut(s) 6, 649, 941, 1022
AclWI GGATC 6 cut(s) 23, 92, 277, 505, 780, 914
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 166, 258, 497, 696
AcuI CTGAAG 1 cut(s) 1089
AfaI GTAC 4 cut(s) 382, 570, 818, 950
AfiI CCNNNNNNNGG 1 cut(s) 655
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 3 cut(s) 282, 355, 819
AgsI TTSAA 5 cut(s) 80, 129, 608, 1093, 1183
AjnI CCWGG 2 cut(s) 513, 684
AluBI AGCT 9 cut(s) 265, 311, 449, 521, 779, 890, 899, 1064, 1188
AluI AGCT 9 cut(s) 265, 311, 449, 521, 779, 890, 899, 1064, 1188
Alw26I GTCTC 5 cut(s) 154, 183, 342, 854, 1008
AlwI GGATC 6 cut(s) 23, 92, 277, 505, 780, 914
AlwNI CAGNNNCTG 2 cut(s) 923, 1112
AoxI GGCC 2 cut(s) 3, 977
ApoI RAATTY 4 cut(s) 166, 258, 497, 696
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 682, 977
AsuHPI GGTGA 4 cut(s) 41, 183, 970, 1165
AsuII TTCGAA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 522
BccI CCATC 3 cut(s) 54, 521, 949
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 2 cut(s) 515, 686
BclI TGATCA 1 cut(s) 1054
BcoDI GTCTC 5 cut(s) 154, 183, 342, 854, 1008
BfaI CTAG 4 cut(s) 450, 702, 878, 900
BfmI CTRYAG 2 cut(s) 808, 894
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 735
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 515, 686
Bme18I GGWCC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 682, 977
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 2 cut(s) 515, 686
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 1135
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 309, 1050
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 3 cut(s) 685, 789, 854
BsaWI WCCGGW 1 cut(s) 951
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 3 cut(s) 203, 1067, 1136
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 515, 686
BseDI CCNNGG 3 cut(s) 685, 789, 854
BseGI GGATG 3 cut(s) 532, 757, 960
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMII CTCAG 6 cut(s) 33, 159, 239, 513, 726, 796
BseNI ACTGG 3 cut(s) 203, 1067, 1136
BseRI GAGGAG 3 cut(s) 171, 306, 330
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 2 cut(s) 5, 979
BsiSI CCGG 1 cut(s) 952
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 5 cut(s) 154, 183, 342, 854, 1008
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 5, 979
Bsp119I TTCGAA 1 cut(s) 69
BspACI CCGC 4 cut(s) 6, 649, 941, 1022
BspANI GGCC 2 cut(s) 5, 979
BspCNI CTCAG 6 cut(s) 32, 158, 238, 514, 727, 795
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 978
BspMI ACCTGC 1 cut(s) 735
BspPI GGATC 6 cut(s) 23, 92, 277, 505, 780, 914
BspT104I TTCGAA 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 707
BsrI ACTGG 3 cut(s) 203, 1067, 1136
BssECI CCNNGG 3 cut(s) 685, 789, 854
BssNAI GTATAC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 515, 686
Bst4CI ACNGT 7 cut(s) 177, 390, 473, 809, 858, 948, 1019
Bst6I CTCTTC 3 cut(s) 94, 115, 233
BstAFI CTTAAG 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 6 cut(s) 19, 145, 225, 522, 735, 782
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 3 cut(s) 532, 757, 960
BstFNI CGCG 1 cut(s) 8
BstMAI GTCTC 5 cut(s) 154, 183, 342, 854, 1008
BstMWI GCNNNNNNNGC 2 cut(s) 887, 896
BstNI CCWGG 2 cut(s) 515, 686
BstNSI RCATGY 2 cut(s) 286, 823
BstSCI CCNGG 2 cut(s) 513, 684
BstSFI CTRYAG 2 cut(s) 808, 894
BstUI CGCG 1 cut(s) 8
BstX2I RGATCY 4 cut(s) 28, 269, 785, 919
BstYI RGATCY 4 cut(s) 28, 269, 785, 919
BstZ17I GTATAC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 5, 979
BtgI CCRYGG 1 cut(s) 854
BtsCI GGATG 3 cut(s) 532, 757, 960
BtsIMutI CAGTG 2 cut(s) 196, 1024
BveI ACCTGC 1 cut(s) 735
CaiI CAGNNNCTG 2 cut(s) 923, 1112
Cfr13I GGNCC 2 cut(s) 682, 977
Csp6I GTAC 4 cut(s) 381, 569, 817, 949
CviAII CATG 2 cut(s) 283, 820
CviQI GTAC 4 cut(s) 381, 569, 817, 949
DdeI CTNAG 6 cut(s) 19, 145, 225, 522, 735, 782
DraI TTTAAA 1 cut(s) 1119
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 94, 115, 233
EarI CTCTTC 3 cut(s) 94, 115, 233
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 682
EcoRI GAATTC 2 cut(s) 166, 258
EcoRII CCWGG 2 cut(s) 513, 684
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 2 cut(s) 286, 823
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 282, 819
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 2 cut(s) 360, 1077
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 539, 764, 967
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 4 cut(s) 450, 702, 878, 900
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 2 cut(s) 309, 1050
HaeIII GGCC 2 cut(s) 5, 979
HapII CCGG 1 cut(s) 952
Hin1II CATG 2 cut(s) 286, 823
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 9 cut(s) 34, 133, 206, 250, 332, 640, 847, 1049, 1139
HpaII CCGG 1 cut(s) 952
HphI GGTGA 4 cut(s) 41, 183, 970, 1165
Hpy166II GTNNAC 3 cut(s) 361, 489, 1078
Hpy188III TCNNGA 4 cut(s) 288, 502, 917, 923
Hpy8I GTNNAC 3 cut(s) 361, 489, 1078
HpyAV CCTTC 6 cut(s) 132, 573, 602, 649, 807, 1095
HpyCH4III ACNGT 7 cut(s) 177, 390, 473, 809, 858, 948, 1019
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 4 cut(s) 427, 554, 730, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 887, 896
HpyF3I CTNAG 6 cut(s) 19, 145, 225, 522, 735, 782
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 2 cut(s) 286, 823
Ksp22I TGATCA 1 cut(s) 1054
LmnI GCTCC 4 cut(s) 446, 895, 1069, 1173
LweI GCATC 1 cut(s) 1135
MaeI CTAG 4 cut(s) 450, 702, 878, 900
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 3 cut(s) 104, 902, 1099
MboII GAAGA 7 cut(s) 38, 81, 102, 117, 250, 809, 848
MflI RGATCY 4 cut(s) 28, 269, 785, 919
MluCI AATT 8 cut(s) 71, 166, 186, 258, 497, 612, 696, 882
MlyI GAGTC 5 cut(s) 28, 341, 856, 1058, 1148
MmeI TCCRAC 3 cut(s) 56, 729, 1051
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 9 cut(s) 351, 392, 440, 456, 543, 708, 885, 998, 1118
MslI CAYNNNNRTG 1 cut(s) 824
MspA1I CMGCKG 2 cut(s) 651, 1188
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 1 cut(s) 952
MspR9I CCNGG 2 cut(s) 515, 686
MvaI CCWGG 2 cut(s) 515, 686
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 887, 896
NlaIII CATG 2 cut(s) 286, 823
NlaIV GGNNCC 1 cut(s) 978
NspI RCATGY 2 cut(s) 286, 823
NspV TTCGAA 1 cut(s) 69
PciI ACATGT 2 cut(s) 282, 819
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 133, 206, 250, 640
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 5 cut(s) 28, 340, 855, 1057, 1147
PpsI GAGTC 5 cut(s) 28, 340, 855, 1057, 1147
PpuMI RGGWCCY 1 cut(s) 682
PscI ACATGT 2 cut(s) 282, 819
PsiI TTATAA 1 cut(s) 761
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 513, 684
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 513, 684
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 2 cut(s) 682, 977
PspPPI RGGWCCY 1 cut(s) 682
PstNI CAGNNNCTG 2 cut(s) 923, 1112
PsuI RGATCY 4 cut(s) 28, 269, 785, 919
PvuII CAGCTG 1 cut(s) 1188
RsaI GTAC 4 cut(s) 382, 570, 818, 950
RsaNI GTAC 4 cut(s) 381, 569, 817, 949
RseI CAYNNNNRTG 1 cut(s) 824
SaqAI TTAA 9 cut(s) 351, 392, 440, 456, 543, 708, 885, 998, 1118
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 682, 977
SchI GAGTC 5 cut(s) 28, 341, 856, 1058, 1148
ScrFI CCNGG 2 cut(s) 515, 686
SfaNI GCATC 1 cut(s) 1135
SfcI CTRYAG 2 cut(s) 808, 894
SfuI TTCGAA 1 cut(s) 69
SinI GGWCC 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 8 cut(s) 71, 166, 186, 258, 497, 612, 696, 882
SsiI CCGC 4 cut(s) 6, 649, 941, 1022
SspMI CTAG 4 cut(s) 450, 702, 878, 900
StyD4I CCNGG 2 cut(s) 513, 684
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 7 cut(s) 177, 390, 473, 809, 858, 948, 1019
TaiI ACGT 1 cut(s) 358
TaqI TCGA 5 cut(s) 69, 136, 256, 909, 1137
TasI AATT 8 cut(s) 71, 166, 186, 258, 497, 612, 696, 882
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 133, 206, 250, 640
Tru1I TTAA 9 cut(s) 351, 392, 440, 456, 543, 708, 885, 998, 1118
Tru9I TTAA 9 cut(s) 351, 392, 440, 456, 543, 708, 885, 998, 1118
TscAI CASTG 2 cut(s) 203, 1024
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 2 cut(s) 203, 1024
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 4 cut(s) 166, 258, 497, 696
XceI RCATGY 2 cut(s) 286, 823
XmiI GTMKAC 2 cut(s) 360, 1077
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 4 cut(s) 450, 702, 878, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.