Rh6BG472800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006598
Physical Location & Seq
Forward (+)
67981468 .. 67985472
4005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG472800.1

Sequence Viewer

Length: 1014 bp
ATGTTGGGGAGGATTAAAGAAGAAGCAGATGACTGTGAGGCTCAGACTAGTGGGCAGGCAACTGCTGCTGACCAAAAGAAAGTACTTAATGATCCTGTATCCACTATACCAAAGTCCTGGAGAGGTGTACAGAAGATCAGTAAATCAAGGGTTGCTAAGCCTATCAAATCTGAGACTGTAAATGCGGAGTCTCGACAAAATGGCGTGACTCCAGTTACTACTTGCCGTTTTGACAGTTCTTTAGGCTTGTTAACTAAGAAATTTGTCAGATTACTTCAGGATACCAAGGATAGAACTCTTGATTTAAACAAAGCAGCAAAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGATATTACAAACGTTCTTGAAGGAATAAATTTGTTAGTAAAAGTTTCAAAGAACCACGTCCGCTGGAAGGGACATGATGTGCCAGGGGAACTGGATGATCAAGTTTTTAAATTACAGGAGGAGGTTGAATATTTATGTGCTGAAGAATGCAGGCTTAATGACGCTATAAGGGAAAGACGAGAGCTTATAAGGACTGTGAAGGAAGATAGGAACAATAAAAAGTACCTCTTTTTGACGGAGGGAGATATCTTGAGCCTTCCCTGCTTCCAGAATCAAACTCTCATTGCAATAAAAGCTCCTCATGCTAGTACTATTGAAGTTCTTGATCCTGATGAGGATATTGATTTTCCCCAAGAACAGTACAGAATGACGGTCAGAAGCGCCACAGGACAGATAGATTGTTACCTCTTAAGTAATTACCAAGGCCAACAGGAAGGCATTACCGTTAAGCAAGAAAACTCAACAGGTTCATCCCCTTGCAATAACACTGGCTATTGCAGAATGGAAGATGGAGGGATGTCACCAGAAATTCATAGCTTACCAGGCGCAGAGGCATCTTCTGGGATGCAGAAGATTGTTCTTTCGCACTTGGATGCCAACGATGACTATTGGTTTAGATCAGAACCTGAAGTCAGCCTTACAGATCTCTGGGCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

337

Amino Acids

37.98

Weight (kDa)

5.37

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 78 - 141 1e-25 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 155 - 255 1.3e-24 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AciI CCGC 2 cut(s) 185, 412
AclI AACGTT 1 cut(s) 363
AclWI GGATC 2 cut(s) 86, 671
AcsI RAATTY 3 cut(s) 260, 379, 879
AcuI CTGAAG 3 cut(s) 260, 513, 999
AfaI GTAC 5 cut(s) 84, 129, 575, 661, 713
AfiI CCNNNNNNNGG 1 cut(s) 418
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 5 cut(s) 335, 371, 399, 479, 668
AhlI ACTAGT 1 cut(s) 47
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 3 cut(s) 116, 433, 892
AluBI AGCT 3 cut(s) 535, 647, 888
AluI AGCT 3 cut(s) 535, 647, 888
Alw26I GTCTC 2 cut(s) 167, 195
AlwI GGATC 2 cut(s) 86, 671
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 2 cut(s) 65, 314
ApoI RAATTY 3 cut(s) 260, 379, 879
AspLEI GCGC 2 cut(s) 734, 899
AsuHPI GGTGA 1 cut(s) 864
BbvI GCAGC 2 cut(s) 52, 326
BccI CCATC 1 cut(s) 854
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 3 cut(s) 118, 435, 894
BciVI GTATCC 2 cut(s) 109, 274
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 167, 195
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 2 cut(s) 48, 657
BfoI RGCGCY 1 cut(s) 735
BfrI CTTAAG 1 cut(s) 760
BfuI GTATCC 2 cut(s) 109, 274
BglII AGATCT 1 cut(s) 994
BisI GCNGC 2 cut(s) 66, 315
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 67, 316
BmcAI AGTACT 2 cut(s) 84, 661
Bme1390I CCNGG 3 cut(s) 118, 435, 894
BmgBI CACGTC 1 cut(s) 409
BmrFI CCNGG 3 cut(s) 118, 435, 894
BmsI GCATC 3 cut(s) 906, 914, 934
BpmI CTGGAG 2 cut(s) 139, 195
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 285, 434, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 3 cut(s) 212, 447, 844
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 3 cut(s) 118, 435, 894
BseDI CCNNGG 3 cut(s) 285, 434, 772
BseGI GGATG 5 cut(s) 451, 821, 873, 921, 949
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 2 cut(s) 56, 162
BseNI ACTGG 3 cut(s) 212, 447, 844
BseRI GAGGAG 3 cut(s) 355, 485, 639
BseXI GCAGC 2 cut(s) 52, 326
BshFI GGCC 1 cut(s) 777
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 167, 195
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 777
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 6 cut(s) 91, 135, 448, 676, 968, 994
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 185, 412
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 2 cut(s) 55, 163
BspPI GGATC 2 cut(s) 86, 671
BspTI CTTAAG 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 3 cut(s) 212, 447, 844
BssECI CCNNGG 3 cut(s) 285, 434, 772
BssMI GATC 6 cut(s) 91, 135, 448, 676, 968, 994
BssT1I CCWWGG 2 cut(s) 285, 772
Bst2UI CCWGG 3 cut(s) 118, 435, 894
Bst4CI ACNGT 7 cut(s) 35, 178, 236, 547, 711, 724, 796
BstAFI CTTAAG 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 57, 503
BstDEI CTNAG 4 cut(s) 42, 156, 171, 255
BstF5I GGATG 5 cut(s) 451, 821, 873, 921, 949
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 2 cut(s) 734, 899
BstKTI GATC 6 cut(s) 94, 138, 451, 679, 971, 997
BstMAI GTCTC 2 cut(s) 167, 195
BstMBI GATC 6 cut(s) 91, 135, 448, 676, 968, 994
BstMWI GCNNNNNNNGC 5 cut(s) 65, 612, 644, 653, 894
BstNI CCWGG 3 cut(s) 118, 435, 894
BstSCI CCNGG 3 cut(s) 116, 433, 892
BstV1I GCAGC 2 cut(s) 52, 326
BstX2I RGATCY 1 cut(s) 994
BstXI CCANNNNNNTGG 1 cut(s) 117
BstYI RGATCY 1 cut(s) 994
BsuI GTATCC 2 cut(s) 109, 274
BsuRI GGCC 1 cut(s) 777
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 5 cut(s) 451, 821, 873, 921, 949
BtsIMutI CAGTG 1 cut(s) 837
Cac8I GCNNGC 2 cut(s) 57, 503
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 734, 899
CseI GACGC 1 cut(s) 521
Csp6I GTAC 5 cut(s) 83, 128, 574, 660, 712
CviAII CATG 2 cut(s) 425, 653
CviQI GTAC 5 cut(s) 83, 128, 574, 660, 712
DdeI CTNAG 4 cut(s) 42, 156, 171, 255
DpnI GATC 6 cut(s) 93, 137, 450, 678, 970, 996
DpnII GATC 6 cut(s) 91, 135, 448, 676, 968, 994
DraI TTTAAA 2 cut(s) 306, 460
Eco130I CCWWGG 2 cut(s) 285, 772
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 3 cut(s) 260, 513, 999
EcoRII CCWGG 3 cut(s) 116, 433, 892
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 285, 772
ErhI CCWWGG 2 cut(s) 285, 772
FaeI CATG 2 cut(s) 428, 656
FaiI YATR 9 cut(s) 107, 349, 351, 426, 487, 518, 539, 654, 885
FalI AAGNNNNNCTT 4 cut(s) 563, 595, 972, 1004
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 424, 652
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 66, 315
FokI GGATG 5 cut(s) 458, 808, 880, 928, 956
Fsp4HI GCNGC 2 cut(s) 66, 315
FspBI CTAG 2 cut(s) 48, 657
GlaI GCGC 2 cut(s) 733, 898
GluI GCNGC 2 cut(s) 66, 315
GsuI CTGGAG 2 cut(s) 139, 195
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 1 cut(s) 777
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 734, 899
Hin1II CATG 2 cut(s) 428, 656
Hin6I GCGC 2 cut(s) 732, 897
HinP1I GCGC 2 cut(s) 732, 897
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 188, 208, 622
HpaI GTTAAC 1 cut(s) 252
HphI GGTGA 1 cut(s) 864
Hpy166II GTNNAC 2 cut(s) 128, 252
Hpy188I TCNGA 5 cut(s) 45, 172, 269, 728, 973
Hpy188III TCNNGA 8 cut(s) 192, 278, 299, 368, 601, 619, 674, 680
Hpy8I GTNNAC 2 cut(s) 128, 252
HpyAV CCTTC 5 cut(s) 365, 412, 544, 617, 779
HpyCH4III ACNGT 7 cut(s) 35, 178, 236, 547, 711, 724, 796
HpyCH4IV ACGT 2 cut(s) 363, 408
HpyCH4V TGCA 5 cut(s) 501, 638, 831, 849, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 612, 644, 653, 894
HpyF3I CTNAG 4 cut(s) 42, 156, 171, 255
HpySE526I ACGT 2 cut(s) 363, 408
Hsp92II CATG 2 cut(s) 428, 656
HspAI GCGC 2 cut(s) 732, 897
Ksp22I TGATCA 1 cut(s) 448
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 6 cut(s) 91, 135, 448, 676, 968, 994
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 2 cut(s) 52, 326
LweI GCATC 3 cut(s) 906, 914, 934
MaeI CTAG 2 cut(s) 48, 657
MaeII ACGT 2 cut(s) 363, 408
MaeIII GTNAC 4 cut(s) 205, 214, 752, 870
MalI GATC 6 cut(s) 93, 137, 450, 678, 970, 996
MboI GATC 6 cut(s) 91, 135, 448, 676, 968, 994
MboII GAAGA 7 cut(s) 32, 145, 506, 566, 869, 900, 934
MflI RGATCY 1 cut(s) 994
MluCI AATT 6 cut(s) 260, 379, 461, 766, 879, 1009
MlyI GAGTC 2 cut(s) 197, 202
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 9 cut(s) 15, 87, 251, 305, 459, 507, 761, 798, 1012
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 414
MspCI CTTAAG 1 cut(s) 760
MspR9I CCNGG 3 cut(s) 118, 435, 894
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 3 cut(s) 118, 435, 894
MwoI GCNNNNNNNGC 5 cut(s) 65, 612, 644, 653, 894
NdeII GATC 6 cut(s) 91, 135, 448, 676, 968, 994
NlaIII CATG 2 cut(s) 428, 656
NmuCI GTSAC 2 cut(s) 205, 870
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 2 cut(s) 67, 316
PleI GAGTC 2 cut(s) 196, 202
PpsI GAGTC 2 cut(s) 196, 202
PsiI TTATAA 1 cut(s) 539
Psp1406I AACGTT 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 116, 433, 892
PspGI CCWGG 3 cut(s) 116, 433, 892
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 1 cut(s) 994
RsaI GTAC 5 cut(s) 84, 129, 575, 661, 713
RsaNI GTAC 5 cut(s) 83, 128, 574, 660, 712
RseI CAYNNNNRTG 1 cut(s) 942
SaqAI TTAA 9 cut(s) 15, 87, 251, 305, 459, 507, 761, 798, 1012
SatI GCNGC 2 cut(s) 66, 315
Sau3AI GATC 6 cut(s) 91, 135, 448, 676, 968, 994
ScaI AGTACT 2 cut(s) 84, 661
SchI GAGTC 2 cut(s) 197, 202
ScrFI CCNGG 3 cut(s) 118, 435, 894
SfaNI GCATC 3 cut(s) 906, 914, 934
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 2 cut(s) 601, 760
SmoI CTYRAG 2 cut(s) 601, 760
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 6 cut(s) 260, 379, 461, 766, 879, 1009
SsiI CCGC 2 cut(s) 185, 412
SspI AATATT 1 cut(s) 482
SspMI CTAG 2 cut(s) 48, 657
StyD4I CCNGG 3 cut(s) 116, 433, 892
StyI CCWWGG 2 cut(s) 285, 772
TaaI ACNGT 7 cut(s) 35, 178, 236, 547, 711, 724, 796
TaiI ACGT 2 cut(s) 366, 411
TaqI TCGA 1 cut(s) 193
TasI AATT 6 cut(s) 260, 379, 461, 766, 879, 1009
TatI WGTACW 4 cut(s) 82, 127, 659, 711
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 9 cut(s) 15, 87, 251, 305, 459, 507, 761, 798, 1012
Tru9I TTAA 9 cut(s) 15, 87, 251, 305, 459, 507, 761, 798, 1012
TscAI CASTG 1 cut(s) 844
TseFI GTSAC 2 cut(s) 205, 870
TseI GCWGC 2 cut(s) 65, 314
Tsp45I GTSAC 2 cut(s) 205, 870
TspDTI ATGAA 2 cut(s) 810, 872
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 1 cut(s) 844
Vha464I CTTAAG 1 cut(s) 760
XapI RAATTY 3 cut(s) 260, 379, 879
XspI CTAG 2 cut(s) 48, 657
ZrmI AGTACT 2 cut(s) 84, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.