FvH4_2g38580

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006598
Physical Location & Seq
Forward (+)
27872135 .. 27876403
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38580.t2

Sequence Viewer

Length: 1164 bp
ATGGAGGATCCGAGTCGCCTACCTCGCCCGGCTCAATTCCAGTACCATCTTCTACATCCTCACTCGCTCCAGACTCCCAGCTCTTCTCTGCCGTCGAATCCACGCCGTGTCCGCCGCTTCACTCCGCCGCCGGACCATCAAGACTCCAAACCTCAAGGCGTTTCTGACAAGGCTCTCACTTCACGCGCCGACGCGTACGCCGCTTTCTCTAAGCTTGAGTTGGGGAAGATTAAAGAAGAACCAGATAATTGTGAGGCTCAGACATGTGGGCAGGCAACTGCTGCTGAACAGAAGAATGTACTTAATGCTCCTGTATCCACTATACCAAAGTCGTGGACAGGTGTGCAGAAGTTCACTAAATCAAAGGTTGCTAAGCTTATAAAATCCGAGGCTGTAAATATGGAGTCTCAAAATGGCATGGCTCCAGTTACTAGTTGCCGATATGACAGTTCTTTAGGGTTGTTAACCAAGAAATTCGTCAGATTACTTCAGGACACCAAGGATAGAACTCTTGATTTAAACAAAGCAGCAAAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGATATTACAAATGTTCTCGAAGGAATCAATTTGTTGGTAAAAGTCTCAAAGAACCACGTCCGCTGGAAGGGCCATGTTGTACCGGTGGAACTGGATGATCATGTTTCTAGATTAAAGGAGGAGGTCGAATCTTTATCTGCTGAAGAATGCAGGCTTAATGACGCTATAAGGAAAAAACGAGAGCTTATAAGGACTGTGAAGGAAGATAGGAACAATAAAAAGTACCTCTTTTTGAAGGAGGGAGATATCTTGAGCCTTCCCTGCTTCCAGAATCAAACTCTTATTGCAATAAAAGCTCCTCATGCTAGTACTATTGAAGTTCTTGATCCTGATGAGGATATTGATTTTCCCCAAGGACAGTACAGAATGACAGTCAGAAGCGCCACGGGACAGATAGATTGTTACCTGTTAAGTAACACTGGCTATTGCAGAATGGAAGATGGAGGGATGTCACCAGAATTTCACAGCTTACCAGACACAGAGCCAGAGGCATCTTCTGGGATGCAGAAAATTGTTCTTTCACACTTAAATGCCAACGATGACTATTGGTTTAGATCAGAACCAGAAGTCAGCCTTACTGATCTCTGGGCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

388

Amino Acids

43.64

Weight (kDa)

7.14

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 149 - 212 1.4e-25 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 226 - 326 1.1e-24 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 380, 752
AccII CGCG 2 cut(s) 186, 194
AciI CCGC 6 cut(s) 112, 115, 125, 128, 201, 625
AclWI GGATC 3 cut(s) 2, 15, 884
AcsI RAATTY 2 cut(s) 473, 1022
AcuI CTGAAG 2 cut(s) 473, 726
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 7 cut(s) 44, 197, 300, 645, 788, 874, 926
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 2 cut(s) 192, 263
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 3 cut(s) 548, 799, 881
AhlI ACTAGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 622
AluBI AGCT 6 cut(s) 81, 214, 376, 748, 860, 1032
AluI AGCT 6 cut(s) 81, 214, 376, 748, 860, 1032
Alw26I GTCTC 2 cut(s) 411, 613
AlwI GGATC 3 cut(s) 2, 15, 884
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 281, 527
ApoI RAATTY 2 cut(s) 473, 1022
AsiGI ACCGGT 1 cut(s) 646
AspLEI GCGC 2 cut(s) 188, 947
AspS9I GGNCC 2 cut(s) 133, 634
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 1008
AvaII GGWCC 1 cut(s) 133
BamHI GGATCC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 268, 539
BccI CCATC 3 cut(s) 54, 144, 998
BceAI ACGGC 2 cut(s) 76, 90
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 411, 613
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 432, 672, 870
BfoI RGCGCY 1 cut(s) 948
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 5 cut(s) 115, 128, 201, 282, 528
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 5 cut(s) 116, 129, 202, 283, 529
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 133, 634
BmiI GGNNCC 2 cut(s) 9, 423
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 1056, 1064
BpmI CTGGAG 2 cut(s) 53, 408
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 3 cut(s) 138, 236, 835
BpuMI CCSGG 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 387, 498, 916, 948
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 4 cut(s) 40, 425, 660, 988
BseDI CCNNGG 4 cut(s) 387, 498, 916, 948
BseGI GGATG 4 cut(s) 55, 664, 1017, 1071
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 4 cut(s) 40, 425, 660, 988
BseRI GAGGAG 3 cut(s) 568, 698, 852
BseXI GCAGC 2 cut(s) 268, 539
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 186, 194
BshFI GGCC 1 cut(s) 636
BshTI ACCGGT 1 cut(s) 646
BsiSI CCGG 3 cut(s) 29, 131, 647
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 2 cut(s) 411, 613
BsmFI GGGAC 1 cut(s) 966
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 1 cut(s) 636
Bsp143I GATC 5 cut(s) 7, 661, 889, 1118, 1144
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 6 cut(s) 112, 115, 125, 128, 201, 625
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 2 cut(s) 186, 194
BspLI GGNNCC 2 cut(s) 9, 423
BspPI GGATC 3 cut(s) 2, 15, 884
BspQI GCTCTTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 4 cut(s) 40, 425, 660, 988
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 4 cut(s) 387, 498, 916, 948
BssMI GATC 5 cut(s) 7, 661, 889, 1118, 1144
BssT1I CCWWGG 2 cut(s) 498, 916
Bst4CI ACNGT 4 cut(s) 449, 760, 924, 937
Bst6I CTCTTC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 273, 716
BstDEI CTNAG 3 cut(s) 210, 258, 372
BstDSI CCRYGG 1 cut(s) 948
BstF5I GGATG 4 cut(s) 55, 664, 1017, 1071
BstFNI CGCG 2 cut(s) 186, 194
BstH2I RGCGCY 1 cut(s) 948
BstHHI GCGC 2 cut(s) 188, 947
BstKTI GATC 5 cut(s) 10, 664, 892, 1121, 1147
BstMAI GTCTC 2 cut(s) 411, 613
BstMBI GATC 5 cut(s) 7, 661, 889, 1118, 1144
BstMWI GCNNNNNNNGC 8 cut(s) 24, 111, 200, 281, 633, 825, 857, 866
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 2 cut(s) 186, 194
BstV1I GCAGC 2 cut(s) 268, 539
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 333
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 948
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 4 cut(s) 55, 664, 1017, 1071
BtsIMutI CAGTG 1 cut(s) 981
Cac8I GCNNGC 2 cut(s) 273, 716
CfoI GCGC 2 cut(s) 188, 947
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 2 cut(s) 133, 634
CseI GACGC 2 cut(s) 200, 734
Csp6I GTAC 7 cut(s) 43, 196, 299, 644, 787, 873, 925
CspAI ACCGGT 1 cut(s) 646
CviAII CATG 5 cut(s) 264, 418, 638, 665, 866
CviQI GTAC 7 cut(s) 43, 196, 299, 644, 787, 873, 925
DdeI CTNAG 3 cut(s) 210, 258, 372
DpnI GATC 5 cut(s) 9, 663, 891, 1120, 1146
DpnII GATC 5 cut(s) 7, 661, 889, 1118, 1144
DraI TTTAAA 1 cut(s) 519
DraIII CACNNNGTG 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 2 cut(s) 101, 114
Eco130I CCWWGG 2 cut(s) 498, 916
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 473, 726
EcoRV GATATC 1 cut(s) 811
EcoT14I CCWWGG 2 cut(s) 498, 916
ErhI CCWWGG 2 cut(s) 498, 916
FaeI CATG 5 cut(s) 267, 421, 641, 668, 869
FalI AAGNNNNNCTT 4 cut(s) 776, 808, 1122, 1154
FaqI GGGAC 1 cut(s) 966
FatI CATG 5 cut(s) 263, 417, 637, 664, 865
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 5 cut(s) 115, 128, 201, 282, 528
FokI GGATG 4 cut(s) 42, 671, 1024, 1078
Fsp4HI GCNGC 5 cut(s) 115, 128, 201, 282, 528
FspBI CTAG 3 cut(s) 432, 672, 870
GlaI GCGC 2 cut(s) 187, 946
GluI GCNGC 5 cut(s) 115, 128, 201, 282, 528
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 2 cut(s) 53, 408
HaeII RGCGCY 1 cut(s) 948
HaeIII GGCC 1 cut(s) 636
HapII CCGG 3 cut(s) 29, 131, 647
HgaI GACGC 2 cut(s) 200, 734
HhaI GCGC 2 cut(s) 188, 947
Hin1II CATG 5 cut(s) 267, 421, 641, 668, 869
Hin6I GCGC 2 cut(s) 186, 945
HinP1I GCGC 2 cut(s) 186, 945
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 2 cut(s) 212, 374
HinfI GANTC 8 cut(s) 13, 73, 97, 143, 404, 588, 692, 835
HpaI GTTAAC 1 cut(s) 465
HpaII CCGG 3 cut(s) 29, 131, 647
HphI GGTGA 1 cut(s) 1008
Hpy166II GTNNAC 3 cut(s) 336, 354, 465
Hpy188I TCNGA 7 cut(s) 12, 166, 261, 388, 482, 941, 1123
Hpy8I GTNNAC 3 cut(s) 336, 354, 465
Hpy99I CGWCG 2 cut(s) 97, 194
HpyAV CCTTC 5 cut(s) 578, 625, 757, 793, 830
HpyCH4III ACNGT 4 cut(s) 449, 760, 924, 937
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 5 cut(s) 346, 714, 851, 993, 1069
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 111, 200, 281, 633, 825, 857, 866
HpyF3I CTNAG 3 cut(s) 210, 258, 372
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 5 cut(s) 267, 421, 641, 668, 869
HspAI GCGC 2 cut(s) 186, 945
Ksp22I TGATCA 1 cut(s) 661
KspAI GTTAAC 1 cut(s) 465
Kzo9I GATC 5 cut(s) 7, 661, 889, 1118, 1144
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 72, 313, 427, 865
Lsp1109I GCAGC 2 cut(s) 268, 539
LweI GCATC 2 cut(s) 1056, 1064
MaeI CTAG 3 cut(s) 432, 672, 870
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 4 cut(s) 427, 965, 977, 1014
MalI GATC 5 cut(s) 9, 663, 891, 1120, 1146
MboI GATC 5 cut(s) 7, 661, 889, 1118, 1144
MboII GAAGA 9 cut(s) 41, 75, 238, 248, 304, 719, 779, 1013, 1050
MflI RGATCY 1 cut(s) 7
MluCI AATT 7 cut(s) 35, 247, 473, 592, 1022, 1074, 1159
MluI ACGCGT 1 cut(s) 192
MlyI GAGTC 4 cut(s) 22, 67, 137, 413
MmeI TCCRAC 1 cut(s) 519
MseI TTAA 9 cut(s) 231, 303, 464, 518, 677, 720, 974, 1091, 1162
MslI CAYNNNNRTG 1 cut(s) 1092
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 3 cut(s) 29, 131, 647
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 716
MvnI CGCG 2 cut(s) 186, 194
MwoI GCNNNNNNNGC 8 cut(s) 24, 111, 200, 281, 633, 825, 857, 866
NciI CCSGG 1 cut(s) 29
NdeII GATC 5 cut(s) 7, 661, 889, 1118, 1144
NlaIII CATG 5 cut(s) 267, 421, 641, 668, 869
NlaIV GGNNCC 2 cut(s) 9, 423
NmuCI GTSAC 1 cut(s) 1014
NspI RCATGY 1 cut(s) 267
PciI ACATGT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 88
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 4 cut(s) 97, 588, 692, 835
Pfl23II CGTACG 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 5 cut(s) 116, 129, 202, 283, 529
PleI GAGTC 4 cut(s) 21, 67, 137, 412
PpsI GAGTC 4 cut(s) 21, 67, 137, 412
PscI ACATGT 1 cut(s) 263
PsiI TTATAA 2 cut(s) 380, 752
PspFI CCCAGC 1 cut(s) 77
PspLI CGTACG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 9, 423
PspPI GGNCC 2 cut(s) 133, 634
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 7 cut(s) 44, 197, 300, 645, 788, 874, 926
RsaNI GTAC 7 cut(s) 43, 196, 299, 644, 787, 873, 925
RseI CAYNNNNRTG 1 cut(s) 1092
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 9 cut(s) 231, 303, 464, 518, 677, 720, 974, 1091, 1162
SatI GCNGC 5 cut(s) 115, 128, 201, 282, 528
Sau3AI GATC 5 cut(s) 7, 661, 889, 1118, 1144
Sau96I GGNCC 2 cut(s) 133, 634
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 4 cut(s) 22, 67, 137, 413
ScrFI CCNGG 1 cut(s) 29
SfaNI GCATC 2 cut(s) 1056, 1064
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 1092
SmlI CTYRAG 3 cut(s) 153, 215, 814
SmoI CTYRAG 3 cut(s) 153, 215, 814
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 7 cut(s) 35, 247, 473, 592, 1022, 1074, 1159
SsiI CCGC 6 cut(s) 112, 115, 125, 128, 201, 625
SspMI CTAG 3 cut(s) 432, 672, 870
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 498, 916
TaaI ACNGT 4 cut(s) 449, 760, 924, 937
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 95, 582, 690
TasI AATT 7 cut(s) 35, 247, 473, 592, 1022, 1074, 1159
TatI WGTACW 3 cut(s) 298, 872, 924
TauI GCSGC 3 cut(s) 117, 130, 203
TfiI GAWTC 4 cut(s) 97, 588, 692, 835
Tru1I TTAA 9 cut(s) 231, 303, 464, 518, 677, 720, 974, 1091, 1162
Tru9I TTAA 9 cut(s) 231, 303, 464, 518, 677, 720, 974, 1091, 1162
TscAI CASTG 1 cut(s) 988
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 2 cut(s) 281, 527
Tsp45I GTSAC 1 cut(s) 1014
TspRI CASTG 1 cut(s) 988
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 2 cut(s) 473, 1022
XbaI TCTAGA 1 cut(s) 671
XceI RCATGY 1 cut(s) 267
XspI CTAG 3 cut(s) 432, 672, 870
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.