MD08G1013800.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0006598
Physical Location & Seq
Forward (+)
1050292 .. 1054801
4510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1013800.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGGAGACGGAGGATCCCAATCGCCTCCTCCGCCCGTCGCAATTCCAGTTCCAACTCCTCCACTCGCACTCCCAGACTCAGAGCCATATGAGCTACCGGTACTCGCCTTTGCCTCCCTCCCAGTGTCTCCGCCCACAGTTATTTCCCGCTCTCGCTCCTTCCCGCGGCTCCGACCGCCGCCGCCTCTCCGGCGACGCTTCTGCTTCTCTCGCCACCGTGGACGCCCGTTCCGCTTTGGCTAAGCTTTCGTTGAGACCAAAACAGGAAATAGATAATGACACTCAGATTGGTGGGCAAGAAGCTGCTGCTGGACCAAGCAAGGTAATGAAGGGTATTTTACCTCTACCACAGTCCTGCTCAGGTGCAAAGCATAATGGTAAACTAAAGGTTCCTAAGCATACCAAAGTTGGGACTCAAAGATCAACCGCGGACTTTTGTAATGGTCTGGGTCCAGCTCAAGCTATTGGTTGCCGTTTTGACAACTCTTTAGGCTTGTTAACCAAGAAATTTATCAAGCTAATTTACGAGGCCAAGGATAGAACCCTTGATTTGAATAGAACAGCAGAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGATATTACGAACGTTCTTGAAGGAATAAATTTGGTAGAGAAAACTTCAAAGAATCACATACGTTGGAAGGGATATGATGGGCCGACACCATGCGAGCTGGATGATCATGTTTCTAGACTAAAGGATGAAGTTGAAAGTCTATATGAGGAGGAATGCAGGCTTGATGATGCTATAACGGAAAAGCAAGAGCTTCTAAGGGCCCTGGAGCAAGATGAAAAGTATAAAAAGTACTTATTTTTGACGGAGGAAGATATTTCAAGTCTTCATTGCTTCCAGAATCAAACACTTATTGCAATAAAAGCTCCTCAAGCTAGTTATATTGAAGTTGTTGATCCTGATGAGGATATTTCTTTTCAACAAAGGCAGTTTAGGATGATTGTCAAAAGCACGATAGGACCTATAGATGTGTATCTCTTGAGCAAATACCAATGTCAACTCGAGAGTATTACTTTGAAGAAAGCAAAATTAGCGGGTTCATCTTCTTGCAATCGTAGTGACTATTGCAATGCGGAAGATGGAGGGATGTCTTCATGTCATCAGGGCGAGAAAAATACTTGTGAAACTCTCAGCGTACCAAGCTCAGAGGCATCTTCTGGGATTCAGAAGATTATTCCTTCACATTTCGATGCCAATGATGATTATTGGTTTAGATCAGAACCTGATGTTAGCCTTACAGATCTATGGGCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

430

Amino Acids

48.09

Weight (kDa)

6.11

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 160 - 223 1.7e-26 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 239 - 339 9e-28 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 2 cut(s) 165, 428
AclI AACGTT 1 cut(s) 609
AclWI GGATC 3 cut(s) 8, 21, 923
AcsI RAATTY 2 cut(s) 506, 625
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 3 cut(s) 101, 827, 1170
AfiI CCNNNNNNNGG 2 cut(s) 164, 408
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 9 cut(s) 553, 581, 617, 645, 731, 855, 920, 953, 1051
AjnI CCWGG 1 cut(s) 798
Alw26I GTCTC 2 cut(s) 131, 247
AlwI GGATC 3 cut(s) 8, 21, 923
AlwNI CAGNNNCTG 1 cut(s) 1256
Ama87I CYCGRG 1 cut(s) 1034
AoxI GGCC 3 cut(s) 528, 677, 795
ApaI GGGCCC 1 cut(s) 799
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 2 cut(s) 506, 625
AsiGI ACCGGT 1 cut(s) 96
AspS9I GGNCC 6 cut(s) 311, 449, 677, 795, 796, 992
AvaI CYCGRG 1 cut(s) 1034
AvaII GGWCC 3 cut(s) 311, 449, 992
BaeGI GKGCMC 1 cut(s) 799
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 799
BbsI GAAGAC 2 cut(s) 851, 1116
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 2 cut(s) 668, 1106
BceAI ACGGC 1 cut(s) 456
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 1 cut(s) 800
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 131, 247
BfaI CTAG 2 cut(s) 711, 909
BfmI CTRYAG 1 cut(s) 996
BglI GCCNNNNNGGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 5 cut(s) 166, 178, 181, 303, 306
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 5 cut(s) 167, 179, 182, 304, 307
BmcAI AGTACT 1 cut(s) 827
Bme1390I CCNGG 1 cut(s) 800
Bme18I GGWCC 3 cut(s) 311, 449, 992
BmeT110I CYCGRG 1 cut(s) 1034
BmgT120I GGNCC 6 cut(s) 311, 449, 677, 795, 796, 992
BmiI GGNNCC 5 cut(s) 15, 169, 390, 450, 797
BmrFI CCNGG 1 cut(s) 800
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 754, 1193, 1213
BmuI ACTGGG 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 851, 1116
BpmI CTGGAG 1 cut(s) 821
Bpu10I CCTNAGC 2 cut(s) 358, 393
Bpu1102I GCTNAGC 1 cut(s) 240
BpuEI CTTGAG 3 cut(s) 441, 888, 1033
BsaBI GATNNNNATC 2 cut(s) 18, 1005
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 5 cut(s) 163, 216, 426, 531, 798
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 408
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 46, 121
Bse3DI GCAATG 2 cut(s) 862, 1108
Bse8I GATNNNNATC 2 cut(s) 18, 1005
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 5 cut(s) 163, 216, 426, 531, 798
BseGI GGATG 4 cut(s) 703, 727, 975, 1125
BseJI GATNNNNATC 2 cut(s) 18, 1005
BseLI CCNNNNNNNGG 2 cut(s) 164, 408
BseMI GCAATG 2 cut(s) 862, 1108
BseMII CTCAG 5 cut(s) 92, 296, 372, 1177, 1191
BseNI ACTGG 2 cut(s) 46, 121
BseRI GAGGAG 5 cut(s) 17, 47, 601, 758, 891
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 2 cut(s) 289, 292
Bsh1236I CGCG 2 cut(s) 165, 428
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 530, 679, 797
BshTI ACCGGT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 1034
BsiSI CCGG 2 cut(s) 97, 189
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 2 cut(s) 164, 408
BsmAI GTCTC 2 cut(s) 131, 247
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 3 cut(s) 530, 679, 797
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 1034
Bsp120I GGGCCC 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
Bsp1720I GCTNAGC 1 cut(s) 240
BspANI GGCC 3 cut(s) 530, 679, 797
BspCNI CTCAG 5 cut(s) 91, 295, 371, 1176, 1190
BspFNI CGCG 2 cut(s) 165, 428
BspLI GGNNCC 5 cut(s) 15, 169, 390, 450, 797
BspPI GGATC 3 cut(s) 8, 21, 923
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 862, 1108
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 2 cut(s) 46, 121
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 5 cut(s) 163, 216, 426, 531, 798
BssMI GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 3 cut(s) 138, 217, 351
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 692, 755
BstDEI CTNAG 8 cut(s) 78, 240, 282, 358, 393, 791, 1163, 1177
BstDSI CCRYGG 3 cut(s) 163, 216, 426
BstF5I GGATG 4 cut(s) 703, 727, 975, 1125
BstFNI CGCG 2 cut(s) 165, 428
BstKTI GATC 6 cut(s) 16, 422, 703, 931, 1250, 1276
BstMAI GTCTC 2 cut(s) 131, 247
BstMBI GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
BstMCI CGRYCG 1 cut(s) 175
BstNI CCWGG 1 cut(s) 800
BstSCI CCNGG 1 cut(s) 798
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 799
BstUI CGCG 2 cut(s) 165, 428
BstV1I GCAGC 2 cut(s) 289, 292
BstV2I GAAGAC 2 cut(s) 851, 1116
BstX2I RGATCY 2 cut(s) 13, 1273
BstYI RGATCY 2 cut(s) 13, 1273
BsuRI GGCC 3 cut(s) 530, 679, 797
BtgI CCRYGG 3 cut(s) 163, 216, 426
BtsCI GGATG 4 cut(s) 703, 727, 975, 1125
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 692, 755
CaiI CAGNNNCTG 1 cut(s) 1256
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 6 cut(s) 311, 449, 677, 795, 796, 992
Cfr42I CCGCGG 2 cut(s) 166, 429
CseI GACGC 2 cut(s) 203, 230
Csp6I GTAC 3 cut(s) 100, 826, 1169
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 3 cut(s) 687, 704, 1128
CviQI GTAC 3 cut(s) 100, 826, 1169
DdeI CTNAG 8 cut(s) 78, 240, 282, 358, 393, 791, 1163, 1177
DpnI GATC 6 cut(s) 15, 421, 702, 930, 1249, 1275
DpnII GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
EciI GGCGGA 2 cut(s) 20, 119
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 3 cut(s) 311, 449, 992
Eco88I CYCGRG 1 cut(s) 1034
EcoO109I RGGNCCY 3 cut(s) 795, 796, 992
EcoRII CCWGG 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 690, 707, 1131
FaqI GGGAC 1 cut(s) 424
FatI CATG 3 cut(s) 686, 703, 1127
FauI CCCGC 3 cut(s) 154, 170, 1060
FauNDI CATATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 5 cut(s) 166, 178, 181, 303, 306
FokI GGATG 4 cut(s) 710, 734, 982, 1132
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 5 cut(s) 166, 178, 181, 303, 306
FspBI CTAG 2 cut(s) 711, 909
GluI GCNGC 5 cut(s) 166, 178, 181, 303, 306
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 3 cut(s) 530, 679, 797
HapII CCGG 2 cut(s) 97, 189
HgaI GACGC 2 cut(s) 203, 230
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 690, 707, 1131
HincII GTYRAC 2 cut(s) 498, 1031
HindII GTYRAC 2 cut(s) 498, 1031
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 5 cut(s) 76, 412, 649, 874, 1195
HpaI GTTAAC 1 cut(s) 498
HpaII CCGG 2 cut(s) 97, 189
Hpy166II GTNNAC 4 cut(s) 220, 380, 498, 1031
Hpy188I TCNGA 6 cut(s) 81, 172, 285, 1180, 1200, 1252
Hpy188III TCNNGA 6 cut(s) 614, 711, 871, 932, 1012, 1036
Hpy8I GTNNAC 4 cut(s) 220, 380, 498, 1031
Hpy99I CGWCG 2 cut(s) 40, 197
HpyAV CCTTC 5 cut(s) 168, 322, 611, 658, 1221
HpyCH4III ACNGT 3 cut(s) 138, 217, 351
HpyCH4IV ACGT 2 cut(s) 609, 658
HpyCH4V TGCA 5 cut(s) 365, 753, 890, 1083, 1101
HpyF3I CTNAG 8 cut(s) 78, 240, 282, 358, 393, 791, 1163, 1177
HpySE526I ACGT 2 cut(s) 609, 658
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 690, 707, 1131
Ksp22I TGATCA 1 cut(s) 700
KspAI GTTAAC 1 cut(s) 498
KspI CCGCGG 2 cut(s) 166, 429
Kzo9I GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
LmnI GCTCC 4 cut(s) 160, 173, 802, 904
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 3 cut(s) 754, 1193, 1213
MaeI CTAG 2 cut(s) 711, 909
MaeII ACGT 2 cut(s) 609, 658
MaeIII GTNAC 1 cut(s) 1091
MalI GATC 6 cut(s) 15, 421, 702, 930, 1249, 1275
MbiI CCGCTC 1 cut(s) 149
MboI GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
MboII GAAGA 8 cut(s) 851, 857, 1063, 1068, 1116, 1121, 1179, 1213
MflI RGATCY 2 cut(s) 13, 1273
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 6 cut(s) 41, 506, 519, 625, 1061, 1285
MlyI GAGTC 2 cut(s) 70, 406
MmeI TCCRAC 4 cut(s) 76, 195, 552, 641
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 1221
MspA1I CMGCKG 2 cut(s) 165, 428
MspI CCGG 2 cut(s) 97, 189
MspR9I CCNGG 1 cut(s) 800
Mva1269I GAATGC 1 cut(s) 755
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 2 cut(s) 165, 428
NdeI CATATG 1 cut(s) 87
NdeII GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
NlaIII CATG 3 cut(s) 690, 707, 1131
NlaIV GGNNCC 5 cut(s) 15, 169, 390, 450, 797
NmuCI GTSAC 1 cut(s) 1091
PaeR7I CTCGAG 1 cut(s) 1034
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 3 cut(s) 649, 874, 1195
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 5 cut(s) 167, 179, 182, 304, 307
PleI GAGTC 2 cut(s) 70, 406
PpsI GAGTC 2 cut(s) 70, 406
PpuMI RGGWCCY 1 cut(s) 992
Psp1406I AACGTT 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 992
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 5 cut(s) 15, 169, 390, 450, 797
PspOMI GGGCCC 1 cut(s) 795
PspPI GGNCC 6 cut(s) 311, 449, 677, 795, 796, 992
PspPPI RGGWCCY 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 2 cut(s) 13, 1273
RsaI GTAC 3 cut(s) 101, 827, 1170
RsaNI GTAC 3 cut(s) 100, 826, 1169
RseI CAYNNNNRTG 1 cut(s) 1221
SacII CCGCGG 2 cut(s) 166, 429
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 5 cut(s) 166, 178, 181, 303, 306
Sau3AI GATC 6 cut(s) 13, 419, 700, 928, 1247, 1273
Sau96I GGNCC 6 cut(s) 311, 449, 677, 795, 796, 992
ScaI AGTACT 1 cut(s) 827
SchI GAGTC 2 cut(s) 70, 406
ScrFI CCNGG 1 cut(s) 800
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 3 cut(s) 754, 1193, 1213
SfcI CTRYAG 1 cut(s) 996
Sfr274I CTCGAG 1 cut(s) 1034
Sfr303I CCGCGG 2 cut(s) 166, 429
SgrBI CCGCGG 2 cut(s) 166, 429
SinI GGWCC 3 cut(s) 311, 449, 992
SlaI CTCGAG 1 cut(s) 1034
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 4 cut(s) 456, 903, 1012, 1034
SmoI CTYRAG 4 cut(s) 456, 903, 1012, 1034
Sse9I AATT 6 cut(s) 41, 506, 519, 625, 1061, 1285
SspMI CTAG 2 cut(s) 711, 909
StyD4I CCNGG 1 cut(s) 798
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 138, 217, 351
TaiI ACGT 2 cut(s) 612, 661
TaqI TCGA 2 cut(s) 1035, 1221
TasI AATT 6 cut(s) 41, 506, 519, 625, 1061, 1285
TatI WGTACW 1 cut(s) 825
TauI GCSGC 3 cut(s) 168, 180, 183
TfiI GAWTC 3 cut(s) 649, 874, 1195
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 2 cut(s) 302, 305
Tsp45I GTSAC 1 cut(s) 1091
TspDTI ATGAA 6 cut(s) 341, 738, 825, 851, 1062, 1116
TspGWI ACGGA 3 cut(s) 23, 788, 854
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 311, 449, 992
XapI RAATTY 2 cut(s) 506, 625
XbaI TCTAGA 1 cut(s) 710
XhoI CTCGAG 1 cut(s) 1034
XspI CTAG 2 cut(s) 711, 909
ZrmI AGTACT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.