Rh6CG442200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006598
Physical Location & Seq
Reverse (-)
62140830 .. 62144352
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG442200.1

Sequence Viewer

Length: 1335 bp
ATGGAGGATCCGAGTCGCCTACCTCGCCCGACTCAATTCCAGTACCATCGTCTACATTCTCACTCGCTCCAGGCTCCGACCCCATCATCTCTGCCGTCGAATCCACGCCGTGTTCGCCACTTCACTCCGCCGCCGGACGATGAAGATTCCAAACCTTTAAGCCTCTCCGATAAGCCTCTCAGTTCACGCGCCGACGCCTACGCCGCTTTTTCTAAGCTTGAGTTGGGGAGGATTAAAGAAGAAGCGGATGACTGTGAGGCTCAGACTAGTGCGCAGGCAACTGCTGCTGACCAAAAGAAAGTACTTAATGATCCTGTATCCACTATACCAAAGTCCTGGAGAGGTGTACAGAAGATCAGTAAATCAAAGGTTGCTAAGCCTATCAAATCTGAGACTGTAAATGCGGAGTCTCAACAAAATGGCGTGACTCCAGTTACTACTTGCCGTTTTGACAGTTCTTTAGGCTTGTTAACTAAGAAATTCGTTAGATTACTTCAGGATACCAAGGATAGAACTCTTGATTTAAACAAAGCAGCAAAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGACATTACAAACGTTCTTGAAGGAGTAAATTTGTTAGTAAAAGTTTCAAAGAACCACGTCCGCTGGAAGGGACATGATGTGCCAGGGGAACTGGATGATCAAGTTTTTAAATTAAAGGAGGAGGTTGAATCTTTATGTGCTGAAGAATGCAGGCTTAATGACGCTATAAGGGAAAGACGAGAGCTTATAAGGACTGTGAAGGAAGATAGGAACAATAAAAAGTATATTCTGAAATCACTTATGTTATTTTCTGCATCCAGGATGATCTCATTTATGTTTTTTTCTTGTGTATTTTCTTTTAAAACATATATCAACTTTTTCAGGTACCTCTTTTTGACGGAGGGAGATATCTTGAGCCTTCCCTGCTTCCAGAATCAAACTCTCATTGCAATAAAAGCTCCTCATGCTAGTACTATTGAAGTTCTTGATCCTGATGAGGATATTGATTTTCCCCAAGGACAGTACAGAATGACGGTCAGAAGCGCCACAGGACAGATAGATTGTTACCTCTTAAGTAATTACCAAGGCCAACAAGAAGGCATTACCGTTAAGCAAGAAGACTCAACAGGTTCATCTCCTTGCAATAACACTGGCTATTGCAGAATGGAAGATGGAGGGATGTCACCAGAATTTCATAGCTTACCAGGCGCAGAGGCATCTTCTGGGATGCAGAAGATTGTTCTTTCGCACTTGGATGCCAACGATGACTATTGGTTTAGATCAGAACCTGAAGTCAGCCTTACAGATCTCTGGGCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

444

Amino Acids

50.21

Weight (kDa)

6.35

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 151 - 214 2.1e-25 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 298 - 362 3.4e-15 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
Acc16I TGCGCA 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 894
AccB1I GGYRCC 1 cut(s) 894
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 189
AciI CCGC 6 cut(s) 128, 131, 204, 245, 404, 631
AclI AACGTT 1 cut(s) 582
AclWI GGATC 4 cut(s) 2, 15, 305, 992
AcsI RAATTY 3 cut(s) 479, 598, 1199
AcuI CTGAAG 3 cut(s) 479, 732, 1320
AcyI GRCGYC 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 6 cut(s) 44, 303, 348, 896, 982, 1034
AfiI CCNNNNNNNGG 1 cut(s) 637
AflII CTTAAG 1 cut(s) 1081
AgsI TTSAA 5 cut(s) 554, 590, 618, 698, 989
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 5 cut(s) 69, 335, 652, 827, 1213
AluBI AGCT 4 cut(s) 217, 754, 968, 1209
AluI AGCT 4 cut(s) 217, 754, 968, 1209
Alw26I GTCTC 2 cut(s) 386, 414
AlwI GGATC 4 cut(s) 2, 15, 305, 992
AlwNI CAGNNNCTG 1 cut(s) 1298
AoxI GGCC 1 cut(s) 1096
ApeKI GCWGC 2 cut(s) 284, 533
ApoI RAATTY 3 cut(s) 479, 598, 1199
Asp718I GGTACC 1 cut(s) 894
AspLEI GCGC 4 cut(s) 191, 274, 1055, 1220
AsuHPI GGTGA 1 cut(s) 1185
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 1134
BbvI GCAGC 2 cut(s) 271, 545
BccI CCATC 3 cut(s) 54, 91, 1175
BceAI ACGGC 3 cut(s) 79, 93, 429
BciT130I CCWGG 5 cut(s) 71, 337, 654, 829, 1215
BciVI GTATCC 2 cut(s) 328, 493
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 386, 414
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 2 cut(s) 267, 978
BfoI RGCGCY 1 cut(s) 1056
BfrI CTTAAG 1 cut(s) 1081
BfuI GTATCC 2 cut(s) 328, 493
BglII AGATCT 1 cut(s) 1315
BisI GCNGC 4 cut(s) 131, 204, 285, 534
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 132, 205, 286, 535
BmcAI AGTACT 2 cut(s) 303, 982
Bme1390I CCNGG 5 cut(s) 71, 337, 654, 829, 1215
BmgBI CACGTC 1 cut(s) 628
BmiI GGNNCC 3 cut(s) 9, 75, 896
BmrFI CCNGG 5 cut(s) 71, 337, 654, 829, 1215
BmsI GCATC 4 cut(s) 833, 1227, 1235, 1255
BpiI GAAGAC 1 cut(s) 1134
BpmI CTGGAG 3 cut(s) 53, 358, 414
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 239, 943
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 504, 653, 1024, 1093
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 4 cut(s) 40, 431, 666, 1165
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 5 cut(s) 71, 337, 654, 829, 1215
BseDI CCNNGG 4 cut(s) 504, 653, 1024, 1093
BseGI GGATG 7 cut(s) 253, 670, 824, 837, 1194, 1242, 1270
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 193, 275, 381
BseNI ACTGG 4 cut(s) 40, 431, 666, 1165
BseRI GAGGAG 3 cut(s) 574, 704, 960
BseXI GCAGC 2 cut(s) 271, 545
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 1098
BshNI GGYRCC 1 cut(s) 894
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 2 cut(s) 386, 414
BsmFI GGGAC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 1 cut(s) 1098
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 6 cut(s) 128, 131, 204, 245, 404, 631
BspANI GGCC 1 cut(s) 1098
BspCNI CTCAG 3 cut(s) 192, 274, 382
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 9, 75, 896
BspPI GGATC 4 cut(s) 2, 15, 305, 992
BspT107I GGYRCC 1 cut(s) 894
BspTI CTTAAG 1 cut(s) 1081
BsrDI GCAATG 1 cut(s) 954
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 4 cut(s) 40, 431, 666, 1165
BssECI CCNNGG 4 cut(s) 504, 653, 1024, 1093
BssMI GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 3 cut(s) 504, 1024, 1093
Bst2UI CCWGG 5 cut(s) 71, 337, 654, 829, 1215
Bst4CI ACNGT 7 cut(s) 254, 397, 455, 766, 1032, 1045, 1117
BstACI GRCGYC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 1081
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 276, 722
BstDEI CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
BstF5I GGATG 7 cut(s) 253, 670, 824, 837, 1194, 1242, 1270
BstFNI CGCG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 4 cut(s) 191, 274, 1055, 1220
BstKTI GATC 8 cut(s) 10, 313, 357, 670, 837, 1000, 1292, 1318
BstMAI GTCTC 2 cut(s) 386, 414
BstMBI GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
BstMWI GCNNNNNNNGC 8 cut(s) 24, 114, 203, 284, 933, 965, 974, 1215
BstNI CCWGG 5 cut(s) 71, 337, 654, 829, 1215
BstSCI CCNGG 5 cut(s) 69, 335, 652, 827, 1213
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 271, 545
BstV2I GAAGAC 1 cut(s) 1134
BstX2I RGATCY 2 cut(s) 7, 1315
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 2 cut(s) 7, 1315
BsuI GTATCC 2 cut(s) 328, 493
BsuRI GGCC 1 cut(s) 1098
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 7 cut(s) 253, 670, 824, 837, 1194, 1242, 1270
BtsIMutI CAGTG 1 cut(s) 1158
Cac8I GCNNGC 2 cut(s) 276, 722
CaiI CAGNNNCTG 1 cut(s) 1298
CfoI GCGC 4 cut(s) 191, 274, 1055, 1220
CseI GACGC 2 cut(s) 203, 740
Csp6I GTAC 6 cut(s) 43, 302, 347, 895, 981, 1033
CviAII CATG 2 cut(s) 644, 974
CviQI GTAC 6 cut(s) 43, 302, 347, 895, 981, 1033
DdeI CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
DpnI GATC 8 cut(s) 9, 312, 356, 669, 836, 999, 1291, 1317
DpnII GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
DraI TTTAAA 3 cut(s) 525, 679, 871
DraIII CACNNNGTG 1 cut(s) 110
EciI GGCGGA 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 504, 1024, 1093
Eco32I GATATC 1 cut(s) 919
Eco57I CTGAAG 3 cut(s) 479, 732, 1320
EcoRII CCWGG 5 cut(s) 69, 335, 652, 827, 1213
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 3 cut(s) 504, 1024, 1093
ErhI CCWWGG 3 cut(s) 504, 1024, 1093
FaeI CATG 2 cut(s) 647, 977
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FaqI GGGAC 1 cut(s) 654
FatI CATG 2 cut(s) 643, 973
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 131, 204, 285, 534
FokI GGATG 7 cut(s) 260, 677, 811, 844, 1201, 1249, 1277
Fsp4HI GCNGC 4 cut(s) 131, 204, 285, 534
FspBI CTAG 2 cut(s) 267, 978
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 4 cut(s) 190, 273, 1054, 1219
GluI GCNGC 4 cut(s) 131, 204, 285, 534
GsuI CTGGAG 3 cut(s) 53, 358, 414
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 1 cut(s) 1098
HapII CCGG 1 cut(s) 134
HgaI GACGC 2 cut(s) 203, 740
HhaI GCGC 4 cut(s) 191, 274, 1055, 1220
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 647, 977
Hin6I GCGC 4 cut(s) 189, 272, 1053, 1218
HinP1I GCGC 4 cut(s) 189, 272, 1053, 1218
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 9 cut(s) 13, 31, 100, 146, 407, 427, 698, 943, 1130
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 1185
Hpy166II GTNNAC 4 cut(s) 53, 185, 347, 471
Hpy188I TCNGA 8 cut(s) 12, 78, 169, 264, 391, 801, 1049, 1294
Hpy188III TCNNGA 7 cut(s) 497, 518, 587, 922, 940, 995, 1001
Hpy8I GTNNAC 4 cut(s) 53, 185, 347, 471
Hpy99I CGWCG 2 cut(s) 100, 197
HpyAV CCTTC 5 cut(s) 584, 631, 763, 938, 1100
HpyCH4III ACNGT 7 cut(s) 254, 397, 455, 766, 1032, 1045, 1117
HpyCH4IV ACGT 2 cut(s) 582, 627
HpyCH4V TGCA 6 cut(s) 720, 824, 959, 1152, 1170, 1240
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 114, 203, 284, 933, 965, 974, 1215
HpyF3I CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
HpySE526I ACGT 2 cut(s) 582, 627
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 647, 977
HspAI GCGC 4 cut(s) 189, 272, 1053, 1218
KpnI GGTACC 1 cut(s) 898
Ksp22I TGATCA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
LmnI GCTCC 3 cut(s) 72, 79, 973
Lsp1109I GCAGC 2 cut(s) 271, 545
LweI GCATC 4 cut(s) 833, 1227, 1235, 1255
MaeI CTAG 2 cut(s) 267, 978
MaeII ACGT 2 cut(s) 582, 627
MaeIII GTNAC 4 cut(s) 424, 433, 1073, 1191
MalI GATC 8 cut(s) 9, 312, 356, 669, 836, 999, 1291, 1317
MboI GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
MboII GAAGA 9 cut(s) 155, 251, 364, 725, 785, 1139, 1190, 1221, 1255
MflI RGATCY 2 cut(s) 7, 1315
MluCI AATT 7 cut(s) 35, 479, 598, 680, 1087, 1199, 1330
MlyI GAGTC 5 cut(s) 22, 25, 416, 421, 1124
MmeI TCCRAC 2 cut(s) 101, 525
MslI CAYNNNNRTG 1 cut(s) 1263
MspA1I CMGCKG 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 1081
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 5 cut(s) 71, 337, 654, 829, 1215
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 5 cut(s) 71, 337, 654, 829, 1215
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 8 cut(s) 24, 114, 203, 284, 933, 965, 974, 1215
NdeII GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
NlaIII CATG 2 cut(s) 647, 977
NlaIV GGNNCC 3 cut(s) 9, 75, 896
NmuCI GTSAC 2 cut(s) 424, 1191
NsbI TGCGCA 1 cut(s) 273
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 4 cut(s) 100, 146, 698, 943
PfoI TCCNGGA 2 cut(s) 335, 827
PkrI GCNGC 4 cut(s) 132, 205, 286, 535
PleI GAGTC 5 cut(s) 21, 25, 415, 421, 1124
PpsI GAGTC 5 cut(s) 21, 25, 415, 421, 1124
PsiI TTATAA 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 5 cut(s) 69, 335, 652, 827, 1213
PspGI CCWGG 5 cut(s) 69, 335, 652, 827, 1213
PspN4I GGNNCC 3 cut(s) 9, 75, 896
PstNI CAGNNNCTG 1 cut(s) 1298
PsuI RGATCY 2 cut(s) 7, 1315
RsaI GTAC 6 cut(s) 44, 303, 348, 896, 982, 1034
RsaNI GTAC 6 cut(s) 43, 302, 347, 895, 981, 1033
RseI CAYNNNNRTG 1 cut(s) 1263
SatI GCNGC 4 cut(s) 131, 204, 285, 534
Sau3AI GATC 8 cut(s) 7, 310, 354, 667, 834, 997, 1289, 1315
ScaI AGTACT 2 cut(s) 303, 982
SchI GAGTC 5 cut(s) 22, 25, 416, 421, 1124
ScrFI CCNGG 5 cut(s) 71, 337, 654, 829, 1215
SfaNI GCATC 4 cut(s) 833, 1227, 1235, 1255
SmiMI CAYNNNNRTG 1 cut(s) 1263
SmlI CTYRAG 3 cut(s) 218, 922, 1081
SmoI CTYRAG 3 cut(s) 218, 922, 1081
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 7 cut(s) 35, 479, 598, 680, 1087, 1199, 1330
SsiI CCGC 6 cut(s) 128, 131, 204, 245, 404, 631
SspMI CTAG 2 cut(s) 267, 978
StyD4I CCNGG 5 cut(s) 69, 335, 652, 827, 1213
StyI CCWWGG 3 cut(s) 504, 1024, 1093
TaaI ACNGT 7 cut(s) 254, 397, 455, 766, 1032, 1045, 1117
TaiI ACGT 2 cut(s) 585, 630
TaqI TCGA 1 cut(s) 98
TasI AATT 7 cut(s) 35, 479, 598, 680, 1087, 1199, 1330
TatI WGTACW 4 cut(s) 301, 346, 980, 1032
TauI GCSGC 2 cut(s) 133, 206
TfiI GAWTC 4 cut(s) 100, 146, 698, 943
TscAI CASTG 1 cut(s) 1165
TseFI GTSAC 2 cut(s) 424, 1191
TseI GCWGC 2 cut(s) 284, 533
Tsp45I GTSAC 2 cut(s) 424, 1191
TspDTI ATGAA 3 cut(s) 156, 1131, 1193
TspGWI ACGGA 1 cut(s) 923
TspRI CASTG 1 cut(s) 1165
Vha464I CTTAAG 1 cut(s) 1081
XapI RAATTY 3 cut(s) 479, 598, 1199
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 2 cut(s) 267, 978
ZrmI AGTACT 2 cut(s) 303, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.