Rh6AG429800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006598
Physical Location & Seq
Reverse (-)
62104570 .. 62108654
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG429800.1

Sequence Viewer

Length: 948 bp
ATGGAGGATCCGAGTCGCCTACCTCGCCCGACTCAATTCCAGTACCATCGTCTACATTCTCACTCGCTCCAGGCTCCGACCCCATCATCTCTGCCGTCGAATCCACGCCGTGTTCGCCACTTCACTCCGCCGCCGGACGATGAAGATTCCAAACCTTTAAGCCTCTCCGATAAGCCTCTCAGTTCACGCGCCGACGCCTACGCCGCTTTTTCTAAGCTTGAGTTGGGGAGGATTAAAGAAGAAGCGGATGACTGTGAGGCTCAGACTAGTGCGCAGGCAACTGCTGCTGACCAAAAGAAAGTACTTAATGATCCTGTATCCACTATACCAAAGTCCTGGAGAGGTGTACAGAAGATCAGTAAACCAAAGGTTGCTAAGCCTATCAAATCTGAGACTGTAAATGCGGAGTCTCAACAAAATGGTGTGACTCCAGTTACTACTTGCCGTTTTGACAGTTCTTTAGGCTTGTTAACTAAGAAATTCGTCAGATTACTTCAGGATACCAAGGATAGAACTCTTGATTTAAACAAAGCAGCAAAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGACATTACAAACGTTCTTGAAGGAGTAAATTTGTTAGTAAAAGTTTCAAAGAACCACGTCCGCTGGAAGGGACATGATGGGCCAGGGGAACTGGATGATCAAGTTTTTAAATTAAAGGAGGAGGTTGGATCTTTATGTGCTGAAGAATGCAGGCTTAATGACGCTATAAGGGAAAGACGAGAGCTTATAAGGACTGTGAAGGAAGATAGGAACAATAAAAAGTACCTCTTTTTGACGGAGGGAGATATCTTGAGCCTTCCCTGCTTCCAGAATCAAACTCTCATTGCAATAAAAGCTCCTCATGCTAGTACTATTGAAGTTCTTGATCCTGATGAGGTGGGTATCGTGGGTAGATGTGGTTTCGGAATTTGCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

315

Amino Acids

35.21

Weight (kDa)

8.73

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 151 - 214 1.2e-25 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 228 - 301 6.1e-18 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
Acc16I TGCGCA 1 cut(s) 273
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 189
AciI CCGC 7 cut(s) 128, 131, 204, 245, 404, 631, 942
AclI AACGTT 1 cut(s) 582
AclWI GGATC 5 cut(s) 2, 15, 305, 706, 890
AcsI RAATTY 3 cut(s) 479, 598, 936
AcuI CTGAAG 2 cut(s) 479, 732
AcyI GRCGYC 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 5 cut(s) 44, 303, 348, 794, 880
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 4 cut(s) 554, 590, 618, 887
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 3 cut(s) 69, 335, 652
AluBI AGCT 3 cut(s) 217, 754, 866
AluI AGCT 3 cut(s) 217, 754, 866
Alw26I GTCTC 2 cut(s) 386, 414
AlwI GGATC 5 cut(s) 2, 15, 305, 706, 890
AoxI GGCC 1 cut(s) 650
ApeKI GCWGC 2 cut(s) 284, 533
ApoI RAATTY 3 cut(s) 479, 598, 936
AspLEI GCGC 2 cut(s) 191, 274
AspS9I GGNCC 1 cut(s) 650
BamHI GGATCC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 271, 545
BccI CCATC 3 cut(s) 54, 91, 641
BceAI ACGGC 3 cut(s) 79, 93, 429
BciT130I CCWGG 3 cut(s) 71, 337, 654
BciVI GTATCC 2 cut(s) 328, 493
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 386, 414
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 2 cut(s) 267, 876
BfuI GTATCC 2 cut(s) 328, 493
BisI GCNGC 4 cut(s) 131, 204, 285, 534
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 132, 205, 286, 535
BmcAI AGTACT 2 cut(s) 303, 880
Bme1390I CCNGG 3 cut(s) 71, 337, 654
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 2 cut(s) 9, 75
BmrFI CCNGG 3 cut(s) 71, 337, 654
BpmI CTGGAG 3 cut(s) 53, 358, 414
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 239, 841
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 504, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 3 cut(s) 40, 431, 666
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 3 cut(s) 71, 337, 654
BseDI CCNNGG 2 cut(s) 504, 653
BseGI GGATG 2 cut(s) 253, 670
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 3 cut(s) 193, 275, 381
BseNI ACTGG 3 cut(s) 40, 431, 666
BseRI GAGGAG 3 cut(s) 574, 704, 858
BseXI GCAGC 2 cut(s) 271, 545
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 652
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 2 cut(s) 386, 414
BsmFI GGGAC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 1 cut(s) 652
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 6 cut(s) 7, 310, 354, 667, 698, 895
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 7 cut(s) 128, 131, 204, 245, 404, 631, 942
BspANI GGCC 1 cut(s) 652
BspCNI CTCAG 3 cut(s) 192, 274, 382
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 9, 75
BspPI GGATC 5 cut(s) 2, 15, 305, 706, 890
BsrDI GCAATG 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 3 cut(s) 40, 431, 666
BssECI CCNNGG 2 cut(s) 504, 653
BssMI GATC 6 cut(s) 7, 310, 354, 667, 698, 895
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 3 cut(s) 71, 337, 654
Bst4CI ACNGT 4 cut(s) 254, 397, 455, 766
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 276, 722
BstDEI CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
BstF5I GGATG 2 cut(s) 253, 670
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 191, 274
BstKTI GATC 6 cut(s) 10, 313, 357, 670, 701, 898
BstMAI GTCTC 2 cut(s) 386, 414
BstMBI GATC 6 cut(s) 7, 310, 354, 667, 698, 895
BstMWI GCNNNNNNNGC 7 cut(s) 24, 114, 203, 284, 831, 863, 872
BstNI CCWGG 3 cut(s) 71, 337, 654
BstSCI CCNGG 3 cut(s) 69, 335, 652
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 271, 545
BstX2I RGATCY 2 cut(s) 7, 698
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 2 cut(s) 7, 698
BsuI GTATCC 2 cut(s) 328, 493
BsuRI GGCC 1 cut(s) 652
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 2 cut(s) 253, 670
Cac8I GCNNGC 2 cut(s) 276, 722
CfoI GCGC 2 cut(s) 191, 274
Cfr13I GGNCC 1 cut(s) 650
CseI GACGC 2 cut(s) 203, 740
Csp6I GTAC 5 cut(s) 43, 302, 347, 793, 879
CviAII CATG 2 cut(s) 644, 872
CviQI GTAC 5 cut(s) 43, 302, 347, 793, 879
DdeI CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
DpnI GATC 6 cut(s) 9, 312, 356, 669, 700, 897
DpnII GATC 6 cut(s) 7, 310, 354, 667, 698, 895
DraI TTTAAA 2 cut(s) 525, 679
DraIII CACNNNGTG 1 cut(s) 110
EciI GGCGGA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 504
Eco32I GATATC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 479, 732
EcoRII CCWGG 3 cut(s) 69, 335, 652
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 647, 875
FaiI YATR 8 cut(s) 326, 568, 570, 645, 706, 737, 758, 873
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 1 cut(s) 654
FatI CATG 2 cut(s) 643, 871
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 131, 204, 285, 534
FokI GGATG 2 cut(s) 260, 677
Fsp4HI GCNGC 4 cut(s) 131, 204, 285, 534
FspBI CTAG 2 cut(s) 267, 876
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 2 cut(s) 190, 273
GluI GCNGC 4 cut(s) 131, 204, 285, 534
GsuI CTGGAG 3 cut(s) 53, 358, 414
HaeIII GGCC 1 cut(s) 652
HapII CCGG 1 cut(s) 134
HgaI GACGC 2 cut(s) 203, 740
HhaI GCGC 2 cut(s) 191, 274
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 647, 875
Hin6I GCGC 2 cut(s) 189, 272
HinP1I GCGC 2 cut(s) 189, 272
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 7 cut(s) 13, 31, 100, 146, 407, 427, 841
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 5 cut(s) 53, 185, 347, 362, 471
Hpy188I TCNGA 7 cut(s) 12, 78, 169, 264, 391, 488, 935
Hpy188III TCNNGA 7 cut(s) 497, 518, 587, 820, 838, 893, 899
Hpy8I GTNNAC 5 cut(s) 53, 185, 347, 362, 471
Hpy99I CGWCG 2 cut(s) 100, 197
HpyAV CCTTC 4 cut(s) 584, 631, 763, 836
HpyCH4III ACNGT 4 cut(s) 254, 397, 455, 766
HpyCH4IV ACGT 2 cut(s) 582, 627
HpyCH4V TGCA 2 cut(s) 720, 857
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 114, 203, 284, 831, 863, 872
HpyF3I CTNAG 6 cut(s) 179, 213, 261, 375, 390, 474
HpySE526I ACGT 2 cut(s) 582, 627
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 647, 875
HspAI GCGC 2 cut(s) 189, 272
Ksp22I TGATCA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 6 cut(s) 7, 310, 354, 667, 698, 895
LmnI GCTCC 3 cut(s) 72, 79, 871
Lsp1109I GCAGC 2 cut(s) 271, 545
MaeI CTAG 2 cut(s) 267, 876
MaeII ACGT 2 cut(s) 582, 627
MaeIII GTNAC 2 cut(s) 424, 433
MalI GATC 6 cut(s) 9, 312, 356, 669, 700, 897
MboI GATC 6 cut(s) 7, 310, 354, 667, 698, 895
MboII GAAGA 5 cut(s) 155, 251, 364, 725, 785
MflI RGATCY 2 cut(s) 7, 698
MluCI AATT 5 cut(s) 35, 479, 598, 680, 936
MlyI GAGTC 4 cut(s) 22, 25, 416, 421
MmeI TCCRAC 3 cut(s) 101, 525, 676
MseI TTAA 8 cut(s) 158, 234, 306, 470, 524, 678, 683, 726
MspA1I CMGCKG 1 cut(s) 633
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 3 cut(s) 71, 337, 654
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 3 cut(s) 71, 337, 654
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 7 cut(s) 24, 114, 203, 284, 831, 863, 872
NdeII GATC 6 cut(s) 7, 310, 354, 667, 698, 895
NlaIII CATG 2 cut(s) 647, 875
NlaIV GGNNCC 2 cut(s) 9, 75
NmuCI GTSAC 1 cut(s) 424
NsbI TGCGCA 1 cut(s) 273
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 3 cut(s) 100, 146, 841
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 4 cut(s) 132, 205, 286, 535
PleI GAGTC 4 cut(s) 21, 25, 415, 421
PpsI GAGTC 4 cut(s) 21, 25, 415, 421
PsiI TTATAA 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 69, 335, 652
PspGI CCWGG 3 cut(s) 69, 335, 652
PspN4I GGNNCC 2 cut(s) 9, 75
PspPI GGNCC 1 cut(s) 650
PsuI RGATCY 2 cut(s) 7, 698
RsaI GTAC 5 cut(s) 44, 303, 348, 794, 880
RsaNI GTAC 5 cut(s) 43, 302, 347, 793, 879
SaqAI TTAA 8 cut(s) 158, 234, 306, 470, 524, 678, 683, 726
SatI GCNGC 4 cut(s) 131, 204, 285, 534
Sau3AI GATC 6 cut(s) 7, 310, 354, 667, 698, 895
Sau96I GGNCC 1 cut(s) 650
ScaI AGTACT 2 cut(s) 303, 880
SchI GAGTC 4 cut(s) 22, 25, 416, 421
ScrFI CCNGG 3 cut(s) 71, 337, 654
SmlI CTYRAG 2 cut(s) 218, 820
SmoI CTYRAG 2 cut(s) 218, 820
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 5 cut(s) 35, 479, 598, 680, 936
SsiI CCGC 7 cut(s) 128, 131, 204, 245, 404, 631, 942
SspMI CTAG 2 cut(s) 267, 876
StyD4I CCNGG 3 cut(s) 69, 335, 652
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 4 cut(s) 254, 397, 455, 766
TaiI ACGT 2 cut(s) 585, 630
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 35, 479, 598, 680, 936
TatI WGTACW 3 cut(s) 301, 346, 878
TauI GCSGC 2 cut(s) 133, 206
TfiI GAWTC 3 cut(s) 100, 146, 841
Tru1I TTAA 8 cut(s) 158, 234, 306, 470, 524, 678, 683, 726
Tru9I TTAA 8 cut(s) 158, 234, 306, 470, 524, 678, 683, 726
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 2 cut(s) 284, 533
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 821
XapI RAATTY 3 cut(s) 479, 598, 936
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 2 cut(s) 267, 876
ZrmI AGTACT 2 cut(s) 303, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.