Prupe.1G366800_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006598
Physical Location & Seq
Forward (+)
33597634 .. 33602421
4788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G366800.2

Sequence Viewer

Length: 1311 bp
ATGGAGATGGAGGATCCGAATCGCCTTCTTCGACCGTCTCAATTCGAGTTCCAGCTGCTGCACTCTCATTCACAGACTCAGAATCATCAGAACCATCCGAGCTATCTGCTTCCGTCTTTGCCTTCCTCTCAACGTCTTCTTCCCCACTCATTTCCTGCTTTCGCTCCTTCCATCGACTCCGGCCACCACTGCCTCTCCGATAGCGCTTTTGCTTCTCACGCGGACGCCCATTATGCTTTTGCTAAGCTGGCGTTGAGACCAAAGAAGGAAATAGATGATGTGGCTCAGATTGGTGGGCATGAAGCTGCTGCTGGACCGAGCAAGGCACTTCAGGATCCGTCGTTATCTGTACCACAGTCCTGCACGGGTAGAAAACATAACCCTAAGTCAAAGGTTCCTAAGCATACGAAAGCTGGGACTCAAAGATCAACTGCGGATTCTCATAATGGTCTGAATCCAGCTATTGGTTGCCGCTATGACAGCTCTTTAGGCTTGTTAACCAAGAAGTTTGTTAGTTTAATTCAGGAGGCCAAGGATAGAACCCTTGATTTGAACAAAACGGCAGAGGTGTTGGAGGTTCAAAAGCGGAGGATATATGATATTACGAATGTTCTTGAAGGAATAAATTTGATAGAGAAAACTTCAAAGAATCATATACGCTGGAAGTGTTATGATGGGTCGACACCAGGGGAGCTAGATGATCAAGTTTCTAGAATACAGGATGAAGTTGAAAGTTTATATGCTGAAGAATGCAGGCTTGATGATGCTATAAGGGAAAAGCTAGAGCTTCTGAGGGCCTTGGAGGAAGATGAAAAGAATAAAAAGTTCCTATTTTTGACGGAGGAAGATATTTTGAGCCCTTGTTGCTTCCAGAATCAAACACTTATTGCAATAAAAGCTCCCCAAGCTAGTTGTATTGAAGTTATTGATCCTGATGATGAGGAGGATACTTGTTTTCCCCAAAAGCAGTTTAGAATGATCGTCAGAAGCACTATAGGACCTATACATTTGTACCTCTTGAGCAAATACCAAGGGCAACGTGAGAATATTGCTGTTAAGCAGGCTAAATCAATGGGTTCATCTTCTTGGAATAGTAGTGATTATTCCAGAGTGGAAGGCGGAGGGCTTTCTTCATACCATCAGGGTAATAAAAAGGACAGTTCTGAAATTCTAAGCTTACCAGGCTCAGAGGCATCTTCTGGGATTCAGAAGATTATTCCTTCACACGTCAATGTCAATGACGATTATTGGTTTAGATCAGAGCATGAAGTCAGCCTGACAGATCTATGGGGGAATGGAGCATTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

437

Amino Acids

48.72

Weight (kDa)

5.92

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 221
AciI CCGC 5 cut(s) 221, 434, 472, 586, 1119
AclWI GGATC 5 cut(s) 8, 21, 329, 342, 923
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 625, 1167
AcuI CTGAAG 2 cut(s) 314, 765
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 351, 1013
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 1225
AgsI TTSAA 6 cut(s) 553, 581, 617, 645, 731, 920
AjiI CACGTC 1 cut(s) 1228
AjnI CCWGG 2 cut(s) 685, 1180
Alw26I GTCTC 2 cut(s) 42, 250
AlwI GGATC 5 cut(s) 8, 21, 329, 342, 923
AlwNI CAGNNNCTG 1 cut(s) 58
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 3 cut(s) 181, 528, 795
ApeKI GCWGC 4 cut(s) 55, 58, 305, 308
ApoI RAATTY 2 cut(s) 625, 1167
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 314, 795, 998
AvaII GGWCC 2 cut(s) 314, 998
BaeI ACNNNNGTAYC 2 cut(s) 995, 1028
BamHI GGATCC 2 cut(s) 13, 334
BanII GRGCYC 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 42, 45, 292, 295
BccI CCATC 4 cut(s) 102, 179, 668, 1146
BceAI ACGGC 1 cut(s) 576
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 2 cut(s) 687, 1182
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 42, 250
BfaI CTAG 4 cut(s) 695, 711, 782, 909
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 207
BfuI GTATCC 1 cut(s) 940
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 5 cut(s) 56, 59, 306, 309, 472
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 5 cut(s) 57, 60, 307, 310, 473
Bme1390I CCNGG 2 cut(s) 687, 1182
Bme18I GGWCC 2 cut(s) 314, 998
BmgBI CACGTC 1 cut(s) 1228
BmgT120I GGNCC 3 cut(s) 314, 795, 998
BmiI GGNNCC 3 cut(s) 15, 336, 396
BmrFI CCNGG 2 cut(s) 687, 1182
BmsI GCATC 2 cut(s) 754, 1202
BpiI GAAGAC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 1039
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 4 cut(s) 531, 686, 798, 1030
BsaXI ACNNNNNCTCC 3 cut(s) 179, 209, 1290
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 687, 1182
BseDI CCNNGG 4 cut(s) 531, 686, 798, 1030
BseGI GGATG 2 cut(s) 94, 727
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 4 cut(s) 92, 299, 782, 1200
BseRI GAGGAG 1 cut(s) 956
BseXI GCAGC 4 cut(s) 42, 45, 292, 295
BseYI CCCAGC 1 cut(s) 413
BsgI GTGCAG 2 cut(s) 44, 346
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 3 cut(s) 183, 530, 797
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 42, 250
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 3 cut(s) 183, 530, 797
Bso31I GGTCTC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 860
Bsp143I GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 5 cut(s) 221, 434, 472, 586, 1119
BspANI GGCC 3 cut(s) 183, 530, 797
BspCNI CTCAG 4 cut(s) 91, 298, 783, 1199
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 3 cut(s) 15, 336, 396
BspPI GGATC 5 cut(s) 8, 21, 329, 342, 923
BspTNI GGTCTC 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 531, 686, 798, 1030
BssMI GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 3 cut(s) 531, 798, 1030
Bst2UI CCWGG 2 cut(s) 687, 1182
Bst4CI ACNGT 3 cut(s) 36, 357, 1160
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 249, 755, 1062
BstDEI CTNAG 8 cut(s) 78, 243, 285, 384, 399, 791, 1172, 1186
BstF5I GGATG 2 cut(s) 94, 727
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 8 cut(s) 16, 337, 428, 703, 931, 981, 1259, 1285
BstMAI GTCTC 2 cut(s) 42, 250
BstMBI GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
BstMCI CGRYCG 1 cut(s) 35
BstNI CCWGG 2 cut(s) 687, 1182
BstSCI CCNGG 2 cut(s) 685, 1180
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 4 cut(s) 42, 45, 292, 295
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 13, 334, 1282
BstYI RGATCY 3 cut(s) 13, 334, 1282
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 183, 530, 797
BtrI CACGTC 1 cut(s) 1228
BtsCI GGATG 2 cut(s) 94, 727
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 249, 755, 1062
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 314, 795, 998
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 350, 1012
CviAII CATG 2 cut(s) 299, 1265
CviQI GTAC 2 cut(s) 350, 1012
DdeI CTNAG 8 cut(s) 78, 243, 285, 384, 399, 791, 1172, 1186
DpnI GATC 8 cut(s) 15, 336, 427, 702, 930, 980, 1258, 1284
DpnII GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
EaeI YGGCCR 1 cut(s) 181
EciI GGCGGA 1 cut(s) 1134
Eco130I CCWWGG 3 cut(s) 531, 798, 1030
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 314, 998
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 314, 765
EcoO109I RGGNCCY 2 cut(s) 795, 998
EcoRII CCWGG 2 cut(s) 685, 1180
EcoT14I CCWWGG 3 cut(s) 531, 798, 1030
EcoT38I GRGCYC 1 cut(s) 860
ErhI CCWWGG 3 cut(s) 531, 798, 1030
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 302, 1268
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 298, 1264
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 5 cut(s) 56, 59, 306, 309, 472
FokI GGATG 2 cut(s) 81, 734
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 5 cut(s) 56, 59, 306, 309, 472
FspBI CTAG 4 cut(s) 695, 711, 782, 909
GlaI GCGC 1 cut(s) 205
GluI GCNGC 5 cut(s) 56, 59, 306, 309, 472
GsaI CCCAGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 3 cut(s) 183, 530, 797
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 302, 1268
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 2 cut(s) 498, 681
HindII GTYRAC 2 cut(s) 498, 681
HindIII AAGCTT 1 cut(s) 1174
HpaI GTTAAC 1 cut(s) 498
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 498, 681
Hpy188III TCNNGA 8 cut(s) 332, 524, 614, 711, 871, 932, 1018, 1107
Hpy8I GTNNAC 2 cut(s) 498, 681
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 7 cut(s) 35, 132, 177, 259, 611, 1109, 1230
HpyCH4III ACNGT 3 cut(s) 36, 357, 1160
HpyCH4IV ACGT 3 cut(s) 133, 1039, 1227
HpyCH4V TGCA 4 cut(s) 61, 363, 753, 890
HpyF3I CTNAG 8 cut(s) 78, 243, 285, 384, 399, 791, 1172, 1186
HpySE526I ACGT 3 cut(s) 133, 1039, 1227
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 302, 1268
HspAI GCGC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 700
KspAI GTTAAC 1 cut(s) 498
Kzo9I GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
LmnI GCTCC 4 cut(s) 169, 691, 904, 1298
Lsp1109I GCAGC 4 cut(s) 42, 45, 292, 295
LweI GCATC 2 cut(s) 754, 1202
MaeI CTAG 4 cut(s) 695, 711, 782, 909
MaeII ACGT 3 cut(s) 133, 1039, 1227
MalI GATC 8 cut(s) 15, 336, 427, 702, 930, 980, 1258, 1284
MboI GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
MflI RGATCY 3 cut(s) 13, 334, 1282
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 4 cut(s) 41, 519, 625, 1167
MlyI GAGTC 3 cut(s) 70, 170, 412
MmeI TCCRAC 1 cut(s) 552
MseI TTAA 3 cut(s) 497, 518, 1056
MslI CAYNNNNRTG 1 cut(s) 1230
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 687, 1182
Mva1269I GAATGC 1 cut(s) 755
MvaI CCWGG 2 cut(s) 687, 1182
MvnI CGCG 1 cut(s) 221
NdeII GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
NlaIII CATG 2 cut(s) 302, 1268
NlaIV GGNNCC 3 cut(s) 15, 336, 396
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 7 cut(s) 19, 82, 437, 454, 649, 874, 1204
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 5 cut(s) 57, 60, 307, 310, 473
PleI GAGTC 3 cut(s) 70, 170, 412
PpsI GAGTC 3 cut(s) 70, 170, 412
PpuMI RGGWCCY 1 cut(s) 998
Psp5II RGGWCCY 1 cut(s) 998
Psp6I CCWGG 2 cut(s) 685, 1180
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 2 cut(s) 685, 1180
PspN4I GGNNCC 3 cut(s) 15, 336, 396
PspPI GGNCC 3 cut(s) 314, 795, 998
PspPPI RGGWCCY 1 cut(s) 998
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 3 cut(s) 13, 334, 1282
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 2 cut(s) 351, 1013
RsaNI GTAC 2 cut(s) 350, 1012
RseI CAYNNNNRTG 1 cut(s) 1230
SalI GTCGAC 1 cut(s) 679
SaqAI TTAA 3 cut(s) 497, 518, 1056
SatI GCNGC 5 cut(s) 56, 59, 306, 309, 472
Sau3AI GATC 8 cut(s) 13, 334, 425, 700, 928, 978, 1256, 1282
Sau96I GGNCC 3 cut(s) 314, 795, 998
SchI GAGTC 3 cut(s) 70, 170, 412
ScrFI CCNGG 2 cut(s) 687, 1182
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 2 cut(s) 754, 1202
SfcI CTRYAG 1 cut(s) 993
SinI GGWCC 2 cut(s) 314, 998
SmiMI CAYNNNNRTG 1 cut(s) 1230
SmlI CTYRAG 1 cut(s) 1018
SmoI CTYRAG 1 cut(s) 1018
Sse9I AATT 4 cut(s) 41, 519, 625, 1167
SsiI CCGC 5 cut(s) 221, 434, 472, 586, 1119
SspI AATATT 1 cut(s) 1048
SspMI CTAG 4 cut(s) 695, 711, 782, 909
StyD4I CCNGG 2 cut(s) 685, 1180
StyI CCWWGG 3 cut(s) 531, 798, 1030
TaaI ACNGT 3 cut(s) 36, 357, 1160
TaiI ACGT 3 cut(s) 136, 1042, 1230
TaqI TCGA 4 cut(s) 31, 45, 174, 680
TaqII GACCGA 1 cut(s) 331
TasI AATT 4 cut(s) 41, 519, 625, 1167
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 7 cut(s) 19, 82, 437, 454, 649, 874, 1204
Tru1I TTAA 3 cut(s) 497, 518, 1056
Tru9I TTAA 3 cut(s) 497, 518, 1056
TscAI CASTG 1 cut(s) 194
TseI GCWGC 4 cut(s) 55, 58, 305, 308
TspDTI ATGAA 6 cut(s) 315, 738, 825, 1068, 1122, 1281
TspGWI ACGGA 3 cut(s) 102, 327, 854
TspRI CASTG 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 314, 998
XapI RAATTY 2 cut(s) 625, 1167
XbaI TCTAGA 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 4 cut(s) 695, 711, 782, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.