Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

17781988 .. 17784211

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGTCTTTTGCAGGCTGCAATTATTCCTCGAAGCCATACATGGTTGCTACCGATCTACTTTGTTGTATCCCTCGGATGCTATGGCCTATTAATGGTTGGAGTCGGGCTCATGCAGTTTCCTACTTGCCCCCAAGAAGCAGTTCTGCTGCAGAAGGATATTGCAGAGGCTAAGGACTTCTTCAAGCACAAAGGGGTAGATGTTGGATCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

89

Amino Acids

9.81

Weight (kDa)

8.69

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 72	2.4e-17	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	34, 148
AgsI	TTSAA	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	71, 202
AseI	ATTAAT	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	58, 189
BciVI	GTATCC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	72, 203
BlsI	GCNGC	2 cut(s)	73, 204
BmsI	GCATC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 148
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	34, 148
BseXI	GCAGC	2 cut(s)	58, 189
BshFI	GGCC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	34, 148
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	18, 108, 260
BspANI	GGCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	18, 108, 260
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	3 cut(s)	21, 111, 263
BstMBI	GATC	3 cut(s)	18, 108, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	58, 189
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	2 cut(s)	96, 166
CviJI	RGCY	7 cut(s)	27, 38, 71, 90, 141, 163, 224
CviKI_1	RGCY	7 cut(s)	27, 38, 71, 90, 141, 163, 224
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	20, 110, 262
DpnII	GATC	3 cut(s)	18, 108, 260
Eco24I	GRGCYC	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	2 cut(s)	99, 169
FaiI	YATR	6 cut(s)	9, 11, 93, 97, 138, 167
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	2 cut(s)	95, 165
Fnu4HI	GCNGC	2 cut(s)	72, 203
FokI	GGATG	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	72, 203
GluI	GCNGC	2 cut(s)	72, 203
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	99, 169
HinfI	GANTC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	22, 52
HpyAV	CCTTC	2 cut(s)	58, 202
HpyCH4V	TGCA	5 cut(s)	67, 74, 169, 205, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	99, 169
Kzo9I	GATC	3 cut(s)	18, 108, 260
LpnPI	CCDG	3 cut(s)	37, 41, 53
Lsp1109I	GCAGC	2 cut(s)	58, 189
LweI	GCATC	1 cut(s)	122
MalI	GATC	3 cut(s)	20, 110, 262
MboI	GATC	3 cut(s)	18, 108, 260
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	2 cut(s)	75, 265
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	2 cut(s)	133, 238
MnlI	CCTC	3 cut(s)	93, 137, 214
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	3 cut(s)	18, 108, 260
NlaIII	CATG	2 cut(s)	99, 169
PdmI	GAANNNNTTC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	73, 204
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	72, 203
Sau3AI	GATC	3 cut(s)	18, 108, 260
SchI	GAGTC	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	75, 265
TaqI	TCGA	2 cut(s)	85, 263
TasI	AATT	2 cut(s)	75, 265
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	2 cut(s)	71, 202
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.