Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

30062644 .. 30065110

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1171700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGCATATTGTGAAAATTCTGACATTGCTGGTGGCCATCTCTGCCTGGTGGATTGGTCTCTTACAGACGTCTATTATTCCGCGGAGTCATACTTGGCTGCTACCAATATATTTCATTGTGTCTCTAGGATGCTATGGCCTGCTAATGGTTGGAGTTGGTTTGATGCAATTTCCGACTTGTCCTCAAGAAGCAGTACTGTTGCAGCAGGACATAGCCGAGGCCAAGGATTTTTTAAAGCAGAAAGGGGTCGATGTGGGTGGCTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

91

Amino Acids

9.95

Weight (kDa)

6.7

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 85	8.5e-25	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	85
AciI	CCGC	2 cut(s)	83, 85
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	65, 129
AoxI	GGCC	3 cut(s)	36, 139, 222
ApeKI	GCWGC	3 cut(s)	100, 205, 264
ApoI	RAATTY	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	87, 217, 251
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	65, 129
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	3 cut(s)	101, 206, 265
BlsI	GCNGC	3 cut(s)	102, 207, 266
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	122, 156
BpuEI	CTTGAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	83, 219, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	83, 219, 225
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	87, 217, 251
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	38, 141, 224
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	65, 129
BsnI	GGCC	3 cut(s)	38, 141, 224
Bso31I	GGTCTC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	83, 85
BspANI	GGCC	3 cut(s)	38, 141, 224
BspFNI	CGCG	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	83, 219, 225
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	65, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	87, 217, 251
BsuRI	GGCC	3 cut(s)	38, 141, 224
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	143
Cfr42I	CCGCGG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	6 cut(s)	38, 100, 141, 218, 224, 264
CviKI_1	RGCY	6 cut(s)	38, 100, 141, 218, 224, 264
CviQI	GTAC	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	5 cut(s)	9, 93, 112, 138, 215
Fnu4HI	GCNGC	3 cut(s)	101, 206, 265
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	101, 206, 265
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	3 cut(s)	101, 206, 265
HaeIII	GGCC	3 cut(s)	38, 141, 224
Hin1I	GRCGYC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	24, 177
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	169, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	71
KspI	CCGCGG	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	17, 34, 61, 155, 194
Lsp1109I	GCAGC	3 cut(s)	87, 217, 251
LweI	GCATC	2 cut(s)	122, 156
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	18, 170
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	133, 200
MnlI	CCTC	2 cut(s)	195, 214
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	102, 207, 266
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SacII	CCGCGG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	101, 206, 265
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	122, 156
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	18, 170
SsiI	CCGC	2 cut(s)	83, 85
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	18, 170
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	3 cut(s)	100, 205, 264
TspDTI	ATGAA	2 cut(s)	17, 106
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.