Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

46133824 .. 46134325

Gene Structure 502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAACATATTGTGAAAATTCTGACATTGTTGGTGACCATCTCTGCCTTATGGATTGGCCTATTACAGACAGCTATTATTCCACGTAGTCATACTTGGTTGCTTCCCATATATTTCATTGTGTCGCTAGGATGCTATGGGCTTCTACTGGTTGGAGTTGGTTTGGTACAATTTCCAACTTGTCCTCAAGAAGCAGTATTGTTGCAGCAGGACGTAATTGAGGCCAAGGAATATTTGAAGCAGAAAGGGATCGATGTGGGTGGCTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

6.7

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 85	1.2e-22	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	2 cut(s)	58, 222
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	60, 224
BshVI	ATCGAT	1 cut(s)	252
BsnI	GGCC	2 cut(s)	60, 224
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	60, 224
BspDI	ATCGAT	1 cut(s)	252
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	86
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	60, 224
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	167
CviJI	RGCY	5 cut(s)	60, 74, 142, 224, 264
CviKI_1	RGCY	5 cut(s)	60, 74, 142, 224, 264
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	6 cut(s)	9, 52, 93, 110, 112, 138
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	60, 224
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	85, 213
HpyCH4V	TGCA	1 cut(s)	205
HpySE526I	ACGT	2 cut(s)	85, 213
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	2 cut(s)	134, 194
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	85, 213
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MluCI	AATT	3 cut(s)	18, 170, 216
MmeI	TCCRAC	2 cut(s)	133, 200
MnlI	CCTC	2 cut(s)	195, 214
NdeII	GATC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	249
SetI	ASST	3 cut(s)	76, 88, 216
SfaNI	GCATC	1 cut(s)	122
SgeI	CNNG	8 cut(s)	96, 108, 140, 161, 192, 200, 221, 238
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	18, 170, 216
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	2 cut(s)	88, 216
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	18, 170, 216
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	17, 106
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.