Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

19320357 .. 19322454

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAACAATGTAGAATTGTATTAAATTCAGGGGCCAAAATAGAAATAAACAAAGTATTATCTTCTTTCACGGTTTCACCCAAAAGTCAAATTTTCGATATTCTCACATTTGCCCCTTTGGAGGCCTTTTTAGGGATTTACCCTCTCAATTTTCTCTGTTCCCCTCCTGCCCTAAACGAACACCTTGGTCTCCGTGGCTCTTCTACTTCTTCTCCGCCGCGATATTCACTAGGAGTGGGAAGTGATTATTATAAATCAATGAAGCATATTGCGAAAATTCTGACATTGTTGGTGGCCATATCTGCCTTGTGGATTGGTCTCTTACAGACGTCTATTATTCCGCGGAGTCATACTTGGCTGCTACCAATATATTTCGTTGTGTCTCTAGGATGCTATGGCCTGCTAATGGTTGGAGTTGGTTTGATGCAATTTCCGACTTGTCCTCAAGAAGCGGTACTGTTGCAGCAGGACGTAGCCGAGGCCAAGGATTTTTTAAAGCAGAAAGGGGTCGATGTGGGTGGCTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

177

Amino Acids

19.19

Weight (kDa)

7.62

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AatII	GACGTC	1 cut(s)	332
AccII	CGCG	2 cut(s)	220, 343
AciI	CCGC	5 cut(s)	215, 218, 341, 343, 452
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	25, 90, 276
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 406
Alw26I	GTCTC	3 cut(s)	194, 323, 387
AoxI	GGCC	5 cut(s)	33, 123, 294, 397, 480
ApeKI	GCWGC	3 cut(s)	358, 463, 522
ApoI	RAATTY	3 cut(s)	25, 90, 276
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	345, 475, 509
BcoDI	GTCTC	3 cut(s)	194, 323, 387
BfaI	CTAG	2 cut(s)	230, 386
BisI	GCNGC	4 cut(s)	218, 359, 464, 523
BlsI	GCNGC	4 cut(s)	219, 360, 465, 524
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	380, 414
BpuEI	CTTGAG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	2 cut(s)	194, 323
BsaJI	CCNNGG	5 cut(s)	184, 193, 341, 477, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 406
BseDI	CCNNGG	5 cut(s)	184, 193, 341, 477, 483
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 406
BseXI	GCAGC	3 cut(s)	345, 475, 509
Bsh1236I	CGCG	2 cut(s)	220, 343
BshFI	GGCC	5 cut(s)	35, 125, 296, 399, 482
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 406
BsmAI	GTCTC	3 cut(s)	194, 323, 387
BsnI	GGCC	5 cut(s)	35, 125, 296, 399, 482
Bso31I	GGTCTC	2 cut(s)	194, 323
BspACI	CCGC	5 cut(s)	215, 218, 341, 343, 452
BspANI	GGCC	5 cut(s)	35, 125, 296, 399, 482
BspFNI	CGCG	2 cut(s)	220, 343
BspLI	GGNNCC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	205
BspTNI	GGTCTC	2 cut(s)	194, 323
BssECI	CCNNGG	5 cut(s)	184, 193, 341, 477, 483
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	2 cut(s)	184, 483
Bst4CI	ACNGT	2 cut(s)	73, 459
Bst6I	CTCTTC	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	401
BstDSI	CCRYGG	2 cut(s)	193, 341
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	2 cut(s)	220, 343
BstMAI	GTCTC	3 cut(s)	194, 323, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstUI	CGCG	2 cut(s)	220, 343
BstV1I	GCAGC	3 cut(s)	345, 475, 509
BsuRI	GGCC	5 cut(s)	35, 125, 296, 399, 482
BtgI	CCRYGG	2 cut(s)	193, 341
BtsCI	GGATG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	455
CviJI	RGCY	9 cut(s)	35, 125, 198, 296, 358, 399, 476, 482, 522
CviKI_1	RGCY	9 cut(s)	35, 125, 198, 296, 358, 399, 476, 482, 522
CviQI	GTAC	1 cut(s)	455
DraI	TTTAAA	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	184, 483
Eco147I	AGGCCT	1 cut(s)	125
Eco31I	GGTCTC	2 cut(s)	194, 323
EcoT14I	CCWWGG	2 cut(s)	184, 483
ErhI	CCWWGG	2 cut(s)	184, 483
FaiI	YATR	6 cut(s)	252, 267, 299, 351, 370, 396
Fnu4HI	GCNGC	4 cut(s)	218, 359, 464, 523
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	218, 359, 464, 523
FspBI	CTAG	2 cut(s)	230, 386
GluI	GCNGC	4 cut(s)	218, 359, 464, 523
HaeIII	GGCC	5 cut(s)	35, 125, 296, 399, 482
Hin1I	GRCGYC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	282, 435
Hpy188III	TCNNGA	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	73, 459
HpyCH4IV	ACGT	2 cut(s)	329, 471
HpyCH4V	TGCA	2 cut(s)	427, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	329, 471
Hsp92I	GRCGYC	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	344
LguI	GCTCTTC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	15, 180, 413, 452
Lsp1109I	GCAGC	3 cut(s)	345, 475, 509
LweI	GCATC	2 cut(s)	380, 414
MaeI	CTAG	2 cut(s)	230, 386
MaeII	ACGT	2 cut(s)	329, 471
MboII	GAAGA	3 cut(s)	54, 192, 201
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	6 cut(s)	15, 25, 90, 148, 276, 428
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	391, 458
MnlI	CCTC	5 cut(s)	115, 153, 174, 453, 472
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	2 cut(s)	23, 494
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	343
MvnI	CGCG	2 cut(s)	220, 343
MwoI	GCNNNNNNNGC	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	219, 360, 465, 524
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SacII	CCGCGG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	23, 494
SatI	GCNGC	4 cut(s)	218, 359, 464, 523
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	355
SetI	ASST	3 cut(s)	186, 332, 474
SfaNI	GCATC	2 cut(s)	380, 414
Sfr303I	CCGCGG	1 cut(s)	344
SgrBI	CCGCGG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	6 cut(s)	15, 25, 90, 148, 276, 428
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	5 cut(s)	215, 218, 341, 343, 452
SspMI	CTAG	2 cut(s)	230, 386
StuI	AGGCCT	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	184, 483
TaaI	ACNGT	2 cut(s)	73, 459
TaiI	ACGT	2 cut(s)	332, 474
TaqI	TCGA	2 cut(s)	96, 510
TasI	AATT	6 cut(s)	15, 25, 90, 148, 276, 428
TauI	GCSGC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	23, 494
Tru9I	TTAA	2 cut(s)	23, 494
TseI	GCWGC	3 cut(s)	358, 463, 522
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	182
XapI	RAATTY	3 cut(s)	25, 90, 276
XspI	CTAG	2 cut(s)	230, 386
ZraI	GACGTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.