Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

25087019 .. 25089472

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1159900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGCATATTGTGAAAATTCTGACATTGTTAGTGGCCATCTCTGCCTTGTGGATTGGTCTCCTACAGACGTCTATTATCCCACGTAGTCATACTTGGTTGCTACCAATATATTTCATTGTGTCTCTAGGATGCTATGGCCTGCTAATGGTTGGAGTTGGTCTCATGCAATTTCCGACTTGTCCTCAAGAGGCAGTACTGTTGCAGCAGGACATAGCTGAGGCCAAGGATTTTTTAAAGCAGAAAGGGGTTGATGTGGCTGGCTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

6.7

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 85	2.6e-25	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	3 cut(s)	65, 129, 167
AoxI	GGCC	3 cut(s)	36, 139, 222
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	65, 129, 167
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmcAI	AGTACT	1 cut(s)	198
BmsI	GCATC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	2 cut(s)	65, 167
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	3 cut(s)	38, 141, 224
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	65, 129, 167
BsnI	GGCC	3 cut(s)	38, 141, 224
Bso31I	GGTCTC	2 cut(s)	65, 167
BspANI	GGCC	3 cut(s)	38, 141, 224
BspCNI	CTCAG	1 cut(s)	211
BspTNI	GGTCTC	2 cut(s)	65, 167
BssECI	CCNNGG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	143, 262
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	137
BstMAI	GTCTC	3 cut(s)	65, 129, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	38, 141, 224
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	143, 262
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	38, 141, 218, 224, 260, 264
CviKI_1	RGCY	6 cut(s)	38, 141, 218, 224, 260, 264
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	219
DraI	TTTAAA	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 167
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	169
FaiI	YATR	6 cut(s)	9, 93, 112, 138, 167, 215
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	3 cut(s)	38, 141, 224
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	24, 177
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	2 cut(s)	71, 85
HpyCH4V	TGCA	2 cut(s)	169, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	2 cut(s)	71, 85
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	155, 194, 246
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	71, 85
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	18, 170
MluNI	TGGCCA	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	133, 200
MnlI	CCTC	3 cut(s)	184, 195, 214
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	86
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	198
SetI	ASST	3 cut(s)	74, 88, 220
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	18, 170
SspMI	CTAG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	2 cut(s)	74, 88
TasI	AATT	2 cut(s)	18, 170
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	17, 106
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.