Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

22923008 .. 22923997

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0160800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAACGGTAATAATGTTGGATGGGCCAATACATGGAGTGCCCCTAGGAGCAGAAAATGTACGTATCTCAGTTGAAGTGCCTATCAAGGAAGATGCTTATCTCCTAATCCCAAATTTGTCAGGTGACATATTTACAGTAAAACAAGCTATAGGTACTCATGCTGCTTGGCCCCGAAATCTTGTTTTAATGTCACATGAAGAGAACTCAAGGAGCACTTTGAAGTCTTTGAGCAAAAAACCAATCACACAAGCAACATACAAGATGCCTGTGTCTGTGCATCTTCTACAGCATTTGGCAAGAATAATGGACAAATCTACAGCAGTGATGGTCCCAATGGAGGATGGTGTGTTTGACAATGACCACAATACATTCATAAACAGTAACAACATCATCCAATTTTGTTTGATGCAGCCAATATCCACTATTTGCATTTCTATCTACATGAGACACCTATGGTTGTTGTTGAAACTAAAGGATGAAGATCACTTGTATGCATTTAAGGATCCTGGATGCATCTCTAATGAAGCTGGAAAGATTGAGGCTAGATCATGTGCACTATCACTTAGATTAGAGTCTGCCCAAGTAGATCAGTTAATTCTTGTTCCTTATAATACAGGGAATCATTGGTTATTGGCTGCCATTAACCCTTTTACTGCGTTGGTGTATTACTTCGACCCATTGAGTAACATTAGCATCAATACAGGGATGAAGAAAATCGTAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

243

Amino Acids

27.16

Weight (kDa)

6.29

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	8 - 64	6.5e-07	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	35
AclWI	GGATC	2 cut(s)	500, 513
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	2 cut(s)	63, 157
AfiI	CCNNNNNNNGG	2 cut(s)	35, 340
AgsI	TTSAA	3 cut(s)	77, 223, 469
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	149, 530, 727
AluI	AGCT	3 cut(s)	149, 530, 727
Alw21I	GWGCWC	2 cut(s)	218, 559
Alw26I	GTCTC	1 cut(s)	442
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	500, 513
AoxI	GGCC	2 cut(s)	26, 170
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	164, 412, 638
ApoI	RAATTY	1 cut(s)	115
AspA2I	CCTAGG	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	26, 171, 331
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	331
AvrII	CCTAGG	1 cut(s)	46
BaeGI	GKGCMC	2 cut(s)	45, 559
BamHI	GGATCC	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	218, 559
BbvI	GCAGC	3 cut(s)	151, 424, 625
BccI	CCATC	3 cut(s)	17, 322, 338
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	2 cut(s)	47, 546
BfmI	CTRYAG	3 cut(s)	150, 287, 318
BisI	GCNGC	3 cut(s)	165, 413, 639
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	3 cut(s)	166, 414, 640
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	3 cut(s)	26, 171, 331
BmiI	GGNNCC	3 cut(s)	173, 333, 507
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	7 cut(s)	85, 255, 289, 399, 503, 525, 705
BpuEI	CTTGAG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	65
BsaBI	GATNNNNATC	2 cut(s)	99, 483
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 340
Bse8I	GATNNNNATC	2 cut(s)	99, 483
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	6 cut(s)	28, 349, 393, 484, 518, 714
BseJI	GATNNNNATC	2 cut(s)	99, 483
BseLI	CCNNNNNNNGG	2 cut(s)	35, 340
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	2 cut(s)	45, 559
BseXI	GCAGC	3 cut(s)	151, 424, 625
BshFI	GGCC	2 cut(s)	28, 172
BsiHKAI	GWGCWC	2 cut(s)	218, 559
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	35, 340
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	28, 172
Bsp1286I	GDGCHC	3 cut(s)	45, 218, 559
Bsp143I	GATC	4 cut(s)	484, 505, 548, 589
BspANI	GGCC	2 cut(s)	28, 172
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	173, 333, 507
BspPI	GGATC	2 cut(s)	500, 513
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	4 cut(s)	484, 505, 548, 589
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	10, 139, 383
Bst6I	CTCTTC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	70, 566
BstF5I	GGATG	6 cut(s)	28, 349, 393, 484, 518, 714
BstKTI	GATC	4 cut(s)	487, 508, 551, 592
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	4 cut(s)	484, 505, 548, 589
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	3 cut(s)	150, 287, 318
BstSLI	GKGCMC	2 cut(s)	45, 559
BstSNI	TACGTA	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	151, 424, 625
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	28, 172
BtsCI	GGATG	6 cut(s)	28, 349, 393, 484, 518, 714
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	26, 171, 331
Csp6I	GTAC	2 cut(s)	62, 156
CviAII	CATG	5 cut(s)	35, 161, 197, 445, 552
CviJI	RGCY	8 cut(s)	28, 149, 172, 415, 530, 545, 638, 727
CviKI_1	RGCY	8 cut(s)	28, 149, 172, 415, 530, 545, 638, 727
CviQI	GTAC	2 cut(s)	62, 156
DdeI	CTNAG	2 cut(s)	70, 566
DpnI	GATC	4 cut(s)	486, 507, 550, 591
DpnII	GATC	4 cut(s)	484, 505, 548, 589
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco105I	TACGTA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	2 cut(s)	499, 518
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	5 cut(s)	38, 164, 200, 448, 555
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	5 cut(s)	34, 160, 196, 444, 551
Fnu4HI	GCNGC	3 cut(s)	165, 413, 639
FokI	GGATG	6 cut(s)	35, 356, 380, 491, 525, 721
Fsp4HI	GCNGC	3 cut(s)	165, 413, 639
FspBI	CTAG	2 cut(s)	47, 546
GluI	GCNGC	3 cut(s)	165, 413, 639
HaeIII	GGCC	2 cut(s)	28, 172
Hin1II	CATG	5 cut(s)	38, 164, 200, 448, 555
HinfI	GANTC	2 cut(s)	575, 622
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	557
Hpy8I	GTNNAC	1 cut(s)	557
HpyCH4III	ACNGT	3 cut(s)	10, 139, 383
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	280, 412, 432, 497, 516, 557
HpyF3I	CTNAG	2 cut(s)	70, 566
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	38, 164, 200, 448, 555
Kzo9I	GATC	4 cut(s)	484, 505, 548, 589
LmnI	GCTCC	2 cut(s)	50, 213
LpnPI	CCDG	7 cut(s)	108, 282, 495, 516, 522, 603, 690
Lsp1109I	GCAGC	3 cut(s)	151, 424, 625
LweI	GCATC	7 cut(s)	85, 255, 289, 399, 503, 525, 705
MaeI	CTAG	2 cut(s)	47, 546
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	4 cut(s)	125, 192, 383, 686
MalI	GATC	4 cut(s)	486, 507, 550, 591
MboI	GATC	4 cut(s)	484, 505, 548, 589
MboII	GAAGA	5 cut(s)	104, 212, 275, 494, 724
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	45, 218, 559
MluCI	AATT	3 cut(s)	115, 398, 597
MlyI	GAGTC	1 cut(s)	584
MnlI	CCTC	2 cut(s)	334, 535
Mph1103I	ATGCAT	2 cut(s)	499, 518
MseI	TTAA	4 cut(s)	188, 501, 596, 645
MslI	CAYNNNNRTG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
NdeII	GATC	4 cut(s)	484, 505, 548, 589
NlaIII	CATG	5 cut(s)	38, 164, 200, 448, 555
NlaIV	GGNNCC	3 cut(s)	173, 333, 507
NmuCI	GTSAC	2 cut(s)	125, 192
NsiI	ATGCAT	2 cut(s)	499, 518
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	3 cut(s)	166, 414, 640
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
Ppu21I	YACGTR	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	173, 333, 507
PspPI	GGNCC	3 cut(s)	26, 171, 331
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	63, 157
RsaNI	GTAC	2 cut(s)	62, 156
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	188, 501, 596, 645
SatI	GCNGC	3 cut(s)	165, 413, 639
Sau3AI	GATC	4 cut(s)	484, 505, 548, 589
Sau96I	GGNCC	3 cut(s)	26, 171, 331
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	3 cut(s)	45, 218, 559
SetI	ASST	7 cut(s)	67, 127, 151, 157, 456, 532, 729
SfaNI	GCATC	7 cut(s)	85, 255, 289, 399, 503, 525, 705
SfcI	CTRYAG	3 cut(s)	150, 287, 318
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	3 cut(s)	115, 398, 597
SspMI	CTAG	2 cut(s)	47, 546
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	10, 139, 383
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	675
TasI	AATT	3 cut(s)	115, 398, 597
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	4 cut(s)	188, 501, 596, 645
Tru9I	TTAA	4 cut(s)	188, 501, 596, 645
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	125, 192
TseI	GCWGC	3 cut(s)	164, 412, 638
Tsp45I	GTSAC	2 cut(s)	125, 192
TspDTI	ATGAA	5 cut(s)	213, 364, 495, 540, 725
TspRI	CASTG	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	47, 546
Zsp2I	ATGCAT	2 cut(s)	499, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.