Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

15906208 .. 15913590

Gene Structure 7383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGCATATTGTGAAAATCCTGACATTGTTGGTGACCATCTCTGCCTTATGGATTGGCCTCTTACAGACAGCTATTATTCCACGTAGTCATACTTGGTTGCTTCCCATATATTTCGTTGTGTCGCTCGGGTGCTATGGGCTTCTAATGGTTGGAGTTGGTTTGGTACAATTTCCAACTTGTCCTCAAGAAGCAGTATTGTTGCAGCAGGACGTAGTAGAGGCCAAGGAATATTTGAAGCAGAAAGGGATTGATGTGGGTGGTTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

6.7

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 85	1.8e-23	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	58, 222
ApeKI	GCWGC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	60, 224
BsiHKCI	CYCGRG	1 cut(s)	128
BsnI	GGCC	2 cut(s)	60, 224
BsoBI	CYCGRG	1 cut(s)	128
BspANI	GGCC	2 cut(s)	60, 224
BssECI	CCNNGG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	86
BstEII	GGTNACC	1 cut(s)	34
BstPI	GGTNACC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	60, 224
Csp6I	GTAC	1 cut(s)	167
CviJI	RGCY	4 cut(s)	60, 74, 142, 224
CviKI_1	RGCY	4 cut(s)	60, 74, 142, 224
CviQI	GTAC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	6 cut(s)	9, 52, 93, 110, 112, 138
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	60, 224
HphI	GGTGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	22, 188
HpyCH4IV	ACGT	2 cut(s)	85, 213
HpyCH4V	TGCA	1 cut(s)	205
HpySE526I	ACGT	2 cut(s)	85, 213
LpnPI	CCDG	2 cut(s)	35, 194
Lsp1109I	GCAGC	1 cut(s)	217
MaeII	ACGT	2 cut(s)	85, 213
MaeIII	GTNAC	1 cut(s)	34
MluCI	AATT	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	133, 200
MnlI	CCTC	3 cut(s)	71, 195, 214
NmuCI	GTSAC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	206
SetI	ASST	3 cut(s)	76, 88, 216
SgeI	CNNG	9 cut(s)	34, 96, 108, 140, 142, 192, 200, 221, 238
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	170
SspI	AATATT	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	2 cut(s)	88, 216
TasI	AATT	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.