Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011503

Physical Location & Seq

Genomic Coordinates Forward (+)

17316655 .. 17317098

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGCATATTGTAAAAATTTTGACATTGTTGGTGGCCATCTCTGCCTTGTGGATTGGTCTCTTACAGACGTCTATTATCCCACGTAGTCATACTTGGTTGCTACCAATATATTTCATTGTGTCTCTAGGATGCTATGGCCTGCTAATGGTCGGAGTTGGTCTCATGCAATTTCCGACTTGTCCTCAAGAAGCAGTACTGTTGCAGCGGGTAGATTACATTTTCTATTTATTTTCTGCCCAGTTTACTTCGCTAAATGATACTTTGGTTAATCGCTCTCTCTTTCTCTCTGTGCTATTTATTACACACCTCTCACCTTTTACATTTATATATGTTTGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DPM3

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

8.55

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM3	PF08285	1 - 70	5.2e-16	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48140 AT1G48140
fragaria_vesca	FvH4_2g18550 FvH4_2g18550 FvH4_2g18550
malus_domestica	MD05G1171700.v1.1 MD10G1159900.v1.1
prunus_persica	Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1 Prupe.8G199000_v2.0.a1
pyrus_communis	pycom05g15840 pycom10g13810
rosa_chinensis	RchiOBHm_Chr6g0284111
rosa_multiflora	Rmu_sc0003778.1_g000039
rosa_roxburghii	Rroxscaffold_7G00184920
rosa_rugosa	Rorug06G0160800 Rorug06G0160900
rosa_samantha	Rh6AG273700 Rh6DG268800
rosa_wichuraiana	Rw6G023550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
AciI	CCGC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	148
Alw26I	GTCTC	3 cut(s)	65, 129, 167
AoxI	GGCC	2 cut(s)	36, 139
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	65, 129, 167
BfaI	CTAG	2 cut(s)	128, 343
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmcAI	AGTACT	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpuEI	CTTGAG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	2 cut(s)	65, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	38, 141
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	65, 129, 167
BsnI	GGCC	2 cut(s)	38, 141
Bso31I	GGTCTC	2 cut(s)	65, 167
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	38, 141
BspTNI	GGTCTC	2 cut(s)	65, 167
BsrI	ACTGG	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	137
BstMAI	GTCTC	3 cut(s)	65, 129, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	38, 141
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	2 cut(s)	38, 141
CviKI_1	RGCY	2 cut(s)	38, 141
CviQI	GTAC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	36
Eco31I	GGTCTC	2 cut(s)	65, 167
FaeI	CATG	1 cut(s)	169
FaiI	YATR	8 cut(s)	9, 93, 112, 138, 167, 329, 331, 333
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	2 cut(s)	128, 343
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	38, 141
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	155, 177
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	2 cut(s)	71, 85
HpyCH4V	TGCA	2 cut(s)	169, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	2 cut(s)	71, 85
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	169
LpnPI	CCDG	2 cut(s)	155, 254
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	128, 343
MaeII	ACGT	2 cut(s)	71, 85
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	18, 170
MluNI	TGGCCA	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	133, 200
MnlI	CCTC	2 cut(s)	195, 320
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	86
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	198
SetI	ASST	4 cut(s)	74, 88, 312, 319
SfaNI	GCATC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	18, 170
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	2 cut(s)	128, 343
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	2 cut(s)	74, 88
TasI	AATT	2 cut(s)	18, 170
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	17, 106
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	2 cut(s)	128, 343
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.