Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Forward (+)

17867102 .. 17868432

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACGAGCGTGAGTGGGTGTGGTTCAGTGAGTCTGATAACTAACCGCAGTGCGTTCTTGGGAAACGGACTTCAACACCGTGCCGTTTTCCTTAAACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTCGAAGCCAAAACCAAAACCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGTATCCGTAAGAAGGTTAATGGTACAACGGAGAGGCCAAGGCTATGTGTTTTCCGATCAAACAAGCATCTTTATGTTCAAGTGATTGATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCAATCTCTGAAGAGTTCGACTACACCTCTGGACCAACCATTGAGGTAGCGAAGAAAGTTGGGGAAGTGATAGCAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTTACCATGGACGTATTGAGGCTCTTGCTGCTGCAGCACGTGAACACGGTCTTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

170

Amino Acids

18.73

Weight (kDa)

9.92

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	53 - 170	2.2e-44	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 178
AcuI	CTGAAG	4 cut(s)	101, 285, 351, 488
AcvI	CACGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	199, 458
AgsI	TTSAA	2 cut(s)	74, 266
AluBI	AGCT	2 cut(s)	299, 305
AluI	AGCT	2 cut(s)	299, 305
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	159, 479, 482, 485
AspS9I	GGNCC	2 cut(s)	126, 353
AvaII	GGWCC	2 cut(s)	126, 353
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BbrPI	CACGTG	1 cut(s)	491
BbsI	GAAGAC	3 cut(s)	99, 171, 494
BbvI	GCAGC	4 cut(s)	171, 466, 469, 497
BceAI	ACGGC	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	4 cut(s)	160, 480, 483, 486
BlsI	GCNGC	4 cut(s)	161, 481, 484, 487
Bme18I	GGWCC	2 cut(s)	126, 353
BmgT120I	GGNCC	2 cut(s)	126, 353
BmsI	GCATC	2 cut(s)	262, 276
BpiI	GAAGAC	3 cut(s)	99, 171, 494
Bpu10I	CCTNAGC	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	5 cut(s)	98, 129, 224, 439, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 458
BseDI	CCNNGG	5 cut(s)	98, 129, 224, 439, 457
BseLI	CCNNNNNNNGG	2 cut(s)	199, 458
BseXI	GCAGC	4 cut(s)	171, 466, 469, 497
BshFI	GGCC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	199, 458
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	242
Bsp19I	CCATGG	3 cut(s)	98, 129, 457
BspACI	CCGC	2 cut(s)	46, 178
BspANI	GGCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	487
BssECI	CCNNGG	5 cut(s)	98, 129, 224, 439, 457
BssMI	GATC	1 cut(s)	242
BssT1I	CCWWGG	4 cut(s)	98, 129, 224, 457
Bst4CI	ACNGT	3 cut(s)	80, 440, 500
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	295, 312
BstDSI	CCRYGG	4 cut(s)	98, 129, 439, 457
BstEII	GGTNACC	1 cut(s)	446
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 485
BstPI	GGTNACC	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	171, 466, 469, 497
BstV2I	GAAGAC	3 cut(s)	99, 171, 494
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	4 cut(s)	98, 129, 439, 457
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	33, 55
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	126, 353
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	99, 130, 458
CviJI	RGCY	7 cut(s)	143, 223, 229, 299, 305, 431, 473
CviKI_1	RGCY	7 cut(s)	143, 223, 229, 299, 305, 431, 473
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	295, 312
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	4 cut(s)	98, 129, 224, 457
Eco47I	GGWCC	2 cut(s)	126, 353
Eco57I	CTGAAG	4 cut(s)	101, 285, 351, 488
Eco72I	CACGTG	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoT14I	CCWWGG	4 cut(s)	98, 129, 224, 457
ErhI	CCWWGG	4 cut(s)	98, 129, 224, 457
FaeI	CATG	3 cut(s)	102, 133, 461
FaiI	YATR	5 cut(s)	100, 131, 232, 261, 459
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	3 cut(s)	98, 129, 457
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	4 cut(s)	160, 480, 483, 486
Fsp4HI	GCNGC	4 cut(s)	160, 480, 483, 486
GluI	GCNGC	4 cut(s)	160, 480, 483, 486
HaeIII	GGCC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	102, 133, 461
HinfI	GANTC	2 cut(s)	31, 171
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	3 cut(s)	36, 242, 331
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	80, 440, 500
HpyCH4IV	ACGT	2 cut(s)	463, 490
HpyCH4V	TGCA	2 cut(s)	289, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 485
HpyF3I	CTNAG	2 cut(s)	295, 312
HpySE526I	ACGT	2 cut(s)	463, 490
Hsp92II	CATG	3 cut(s)	102, 133, 461
Kzo9I	GATC	1 cut(s)	242
LpnPI	CCDG	2 cut(s)	169, 336
Lsp1109I	GCAGC	4 cut(s)	171, 466, 469, 497
LweI	GCATC	2 cut(s)	262, 276
MaeII	ACGT	2 cut(s)	463, 490
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	6 cut(s)	99, 102, 176, 344, 385, 494
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	213, 358, 358, 463
MseI	TTAA	3 cut(s)	93, 204, 511
MslI	CAYNNNNRTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	479, 485
NcoI	CCATGG	3 cut(s)	98, 129, 457
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	102, 133, 461
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	161, 481, 484, 487
PleI	GAGTC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	491
PspCI	CACGTG	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	446
PspPI	GGNCC	2 cut(s)	126, 353
PstI	CTGCAG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	93, 204, 511
SatI	GCNGC	4 cut(s)	160, 480, 483, 486
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	2 cut(s)	126, 353
SchI	GAGTC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	262, 276
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	126, 353
SmiMI	CAYNNNNRTG	1 cut(s)	258
SsiI	CCGC	2 cut(s)	46, 178
StyI	CCWWGG	4 cut(s)	98, 129, 224, 457
TaaI	ACNGT	3 cut(s)	80, 440, 500
TaiI	ACGT	2 cut(s)	466, 493
TaqI	TCGA	2 cut(s)	138, 339
TaqII	GACCGA	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	93, 204, 511
Tru9I	TTAA	3 cut(s)	93, 204, 511
TscAI	CASTG	2 cut(s)	33, 55
TseI	GCWGC	4 cut(s)	159, 479, 482, 485
TspGWI	ACGGA	3 cut(s)	81, 182, 230
TspRI	CASTG	2 cut(s)	33, 55
VpaK11BI	GGWCC	2 cut(s)	126, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.