Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Forward (+)

38218448 .. 38224549

Gene Structure 6102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0222500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGACTGTTTTGTTTATAGCTCTAGTTTTGATCCTTCAATGCTGCATCACAACTAGTATATACCATCCCCTAGACCCTCTCAGCCCAACTGAGATCAACAAAGTAAGGCTCATCGTTCAGAAGTCTCACCTTGCAACTCTTCCCAACCTCACCTTTCATTATGTCGATATCGAAGAGCCGGAGAAGGAAGATGTCCTTGAGTGGCTATCTTCAAGCTCAAGCAATCCAAAGAGGCACATTTCCGCCCCTCCCCGCCGGGCACACGTGGTGGTTCGAGGCGGTGGTGATGTCCACGAACTCGTGGTGGACTTAGGCACCAACATTATCATATCCAACCACGTCTACACCGGTAATGGTTATCCTCCTTTCACCTTTAATGAGTTGTTCAAAGCTAGTAAGCTTCCTTTGACTTACCCCAAATTCAAGAAATCAATTTCAACTAGGGGATTGAATTTGTCTGAAGTTTCTTGCATTCCCTTTACGACTGGTTGGTATGGGGAACATATCACAAGGAGGGCTTTAAAAGTGGAATGCTACTATAGAGGAGGATCAGTAAATGTTTTCACAAGGCCAATTGAGGGAATCACCATTCTTGTGGATGTTGATTTGATGAAGATCACAATGTACACTGATAGGTTCGTAGCCCCTTTGCCTAAAGGTACTGATTTCCAAATCCCAAGAGGGAAGTCAAATTCTGATCATTGCAACAAAACTAGTAGTGGGTTTTCCATTGAAGGCCACAAGGTGAAGTGGGCAAACTGGGTTTTTCATGTTGGGTTCAATGCAAGAGCAGGAATGGTGATTTCAACAGCTTCAGTATTTGATGCCATAAAGAAGAAGTACAGGAGTGTGTTATACAGAGGGCATGTGTCTGAGACCTTTGTGCCTTACATGGATCCTACAAATGAATGGTATTTCAGGACTTTTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATCAATTGATTGTCCTGGAAATGCTGAATATGTGGATGGGTTTATGGCTGGAGCTGATGGGGAGTTGCAGAAGGTACCAAGGGCTATTTGCATTTTTGAAAGGTACTCAGGTGATGTTGCAATGAGACATACTGAAATTAATATCCCTGGCAAATTGATAAGAAGTGGGCAGCAGGAGAAGACTCTGGTGGTTAGGATGGTGGCCACTGTGGGTAACTATGATTATGTTCTTGATTGGGAATTCAAGCAAAGTGGCACCATTAAGGTTGGGGTAGGCTTGACTGGCGTCTTGGAGGTGAAGGCCACATCATACACCAGCGCTGACCAGATGACGGACAACGTGCACGGAACGTTAGTCTCAGAAAACACCGTCGCCGTTAACCACGACCACTTCCTCACGTACTATCTAGACCTCGACGTTGACGGTAACGACAACTCCTTTGTCAAAGCCAAGATGAAAACAGCAAGAGCTAACGGCGCCGCGTCACCAAGAAAGAGTTATTGGAAGGTAGTTAGAGAGACGGCCAAAACTGAAGCCGAGGCTAGGCTACGGCTCGGCTTAGAGGCGGCTGATTTGTTAATAGTGAACCCTAATAGGAAGACCAGGCTTGGAAATCACGTGGGTTACCGCCTGGTCACCGGACAACCGGTTACATCTCTTCTGGCCAATGATGATTACCCCCAAATTAGGGCTTCTTATACCAAGTATCAGGTCTGGGTGACTGCCTATAATAAGTCAGAGAGGTGGGCTGGAGGGTTCTATGCTGATAGGAGCCATGGAGATGATGGCTTAGCTGTTTGGAGCAAGAGGAATAGAGCAATTGAAAACAAAGACATAGTATTATGGTACACAGTGGGATTCCATCACATCCCATACCAAGAAGATTTCCCAGCCATGCCCACACTCCATGGTGGATTCGAGCTCAGCCCTGCAAACTTTTTTGAGTCTAACCCATTACTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

647

Amino Acids

72.6

Weight (kDa)

8.41

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	22 - 113	1.1e-23	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	121 - 214	2.2e-25	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	238 - 645	8.2e-137	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1051
AccB1I	GGYRCC	4 cut(s)	314, 1051, 1232, 1454
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	1460
AciI	CCGC	6 cut(s)	243, 253, 279, 1458, 1544, 1606
AclI	AACGTT	1 cut(s)	1328
AclWI	GGATC	4 cut(s)	25, 556, 890, 903
AcoI	YGGCCR	3 cut(s)	1179, 1500, 1641
AcsI	RAATTY	5 cut(s)	419, 451, 691, 941, 1217
AcuI	CTGAAG	4 cut(s)	480, 798, 956, 1530
AcvI	CACGTG	2 cut(s)	265, 1597
AcyI	GRCGYC	2 cut(s)	1263, 1455
AdeI	CACNNNGTG	2 cut(s)	268, 745
AfaI	GTAC	7 cut(s)	626, 661, 842, 1053, 1082, 1379, 1826
AfeI	AGCGCT	1 cut(s)	1297
AfiI	CCNNNNNNNGG	5 cut(s)	578, 1309, 1521, 1665, 1666
AflIII	ACRYGT	1 cut(s)	262
AgeI	ACCGGT	2 cut(s)	347, 1624
AhlI	ACTAGT	2 cut(s)	53, 713
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	4 cut(s)	991, 1123, 1580, 1608
AjuI	GAANNNNNNNTTGG	4 cut(s)	933, 965, 1462, 1494
Alw21I	GWGCWC	2 cut(s)	1323, 1902
Alw26I	GTCTC	5 cut(s)	129, 869, 1096, 1339, 1490
Alw44I	GTGCAC	1 cut(s)	1319
AlwI	GGATC	4 cut(s)	25, 556, 890, 903
Aor51HI	AGCGCT	1 cut(s)	1297
AoxI	GGCC	6 cut(s)	569, 736, 1179, 1278, 1500, 1641
ApaLI	GTGCAC	1 cut(s)	1319
ApeKI	GCWGC	2 cut(s)	42, 1147
ApoI	RAATTY	5 cut(s)	419, 451, 691, 941, 1217
ArsI	GACNNNNNNTTYG	2 cut(s)	1400, 1432
AseI	ATTAAT	1 cut(s)	1116
AsiGI	ACCGGT	2 cut(s)	347, 1624
Asp718I	GGTACC	1 cut(s)	1051
AspLEI	GCGC	2 cut(s)	1298, 1457
AsuC2I	CCSGG	1 cut(s)	257
BaeGI	GKGCMC	2 cut(s)	262, 1323
BaeI	ACNNNNGTAYC	2 cut(s)	1072, 1105
BalI	TGGCCA	2 cut(s)	1181, 1643
BamHI	GGATCC	1 cut(s)	895
BanI	GGYRCC	4 cut(s)	314, 1051, 1232, 1454
BanII	GRGCYC	1 cut(s)	1902
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	2 cut(s)	265, 1597
BbsI	GAAGAC	2 cut(s)	1163, 1583
Bbv12I	GWGCWC	2 cut(s)	1323, 1902
BbvI	GCAGC	2 cut(s)	29, 1159
BccI	CCATC	7 cut(s)	72, 985, 1007, 1028, 1168, 1757, 1848
BceAI	ACGGC	4 cut(s)	1337, 1468, 1515, 1544
BciT130I	CCWGG	4 cut(s)	993, 1125, 1582, 1610
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	129, 869, 1096, 1339, 1490
BcuI	ACTAGT	2 cut(s)	53, 713
BfaI	CTAG	8 cut(s)	23, 54, 71, 393, 441, 714, 1385, 1521
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	1299, 1458
BisI	GCNGC	4 cut(s)	43, 1148, 1458, 1545
BlpI	GCTNAGC	2 cut(s)	1768, 1901
BlsI	GCNGC	4 cut(s)	44, 1149, 1459, 1546
Bme1390I	CCNGG	5 cut(s)	257, 993, 1125, 1582, 1610
BmgBI	CACGTC	1 cut(s)	340
BmiI	GGNNCC	6 cut(s)	316, 897, 1053, 1234, 1456, 1751
BmrFI	CCNGG	5 cut(s)	257, 993, 1125, 1582, 1610
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	54, 814
BmuI	ACTGGG	1 cut(s)	769
BoxI	GACNNNNGTC	1 cut(s)	1262
BpiI	GAAGAC	2 cut(s)	1163, 1583
BpmI	CTGGAG	2 cut(s)	1047, 1749
Bpu1102I	GCTNAGC	2 cut(s)	1768, 1901
BpuEI	CTTGAG	2 cut(s)	202, 218
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	3 cut(s)	265, 1377, 1597
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	2 cut(s)	1263, 1455
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	5 cut(s)	1055, 1123, 1515, 1753, 1885
BsaWI	WCCGGW	3 cut(s)	347, 1616, 1624
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 1397, 1427
Bsc4I	CCNNNNNNNGG	5 cut(s)	578, 1309, 1521, 1665, 1666
Bse118I	RCCGGY	2 cut(s)	347, 1624
Bse1I	ACTGG	3 cut(s)	490, 764, 1264
Bse3DI	GCAATG	2 cut(s)	700, 1104
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	4 cut(s)	993, 1125, 1582, 1610
BseDI	CCNNGG	5 cut(s)	1055, 1123, 1515, 1753, 1885
BseGI	GGATG	5 cut(s)	64, 604, 1018, 1179, 1845
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	5 cut(s)	578, 1309, 1521, 1665, 1666
BseMI	GCAATG	2 cut(s)	700, 1104
BseMII	CTCAG	6 cut(s)	81, 94, 864, 1098, 1350, 1915
BseNI	ACTGG	3 cut(s)	490, 764, 1264
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	2 cut(s)	262, 1323
BseXI	GCAGC	2 cut(s)	29, 1159
BseYI	CCCAGC	1 cut(s)	1867
Bsh1236I	CGCG	1 cut(s)	1460
BshFI	GGCC	6 cut(s)	571, 738, 1181, 1280, 1502, 1643
BshNI	GGYRCC	4 cut(s)	314, 1051, 1232, 1454
BshTI	ACCGGT	2 cut(s)	347, 1624
BsiHKAI	GWGCWC	2 cut(s)	1323, 1902
BsiSI	CCGG	5 cut(s)	179, 256, 348, 1617, 1625
BslI	CCNNNNNNNGG	5 cut(s)	578, 1309, 1521, 1665, 1666
BsmAI	GTCTC	5 cut(s)	129, 869, 1096, 1339, 1490
BsmBI	CGTCTC	1 cut(s)	1490
BsmI	GAATGC	2 cut(s)	471, 536
BsnI	GGCC	6 cut(s)	571, 738, 1181, 1280, 1502, 1643
Bso31I	GGTCTC	1 cut(s)	869
Bsp1286I	GDGCHC	3 cut(s)	262, 1323, 1902
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
Bsp1720I	GCTNAGC	2 cut(s)	1768, 1901
Bsp19I	CCATGG	2 cut(s)	1753, 1885
BspACI	CCGC	6 cut(s)	243, 253, 279, 1458, 1544, 1606
BspANI	GGCC	6 cut(s)	571, 738, 1181, 1280, 1502, 1643
BspCNI	CTCAG	6 cut(s)	82, 93, 865, 1097, 1349, 1914
BspFNI	CGCG	1 cut(s)	1460
BspLI	GGNNCC	6 cut(s)	316, 897, 1053, 1234, 1456, 1751
BspPI	GGATC	4 cut(s)	25, 556, 890, 903
BspQI	GCTCTTC	2 cut(s)	168, 975
BspT107I	GGYRCC	4 cut(s)	314, 1051, 1232, 1454
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	2 cut(s)	700, 1104
BsrFI	RCCGGY	2 cut(s)	347, 1624
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	490, 764, 1264
BssAI	RCCGGY	2 cut(s)	347, 1624
BssECI	CCNNGG	5 cut(s)	1055, 1123, 1515, 1753, 1885
BssMI	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
BssNI	GRCGYC	2 cut(s)	1263, 1455
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	1055, 1753, 1885
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	4 cut(s)	993, 1125, 1582, 1610
Bst4CI	ACNGT	5 cut(s)	7, 1186, 1348, 1403, 1831
Bst6I	CTCTTC	4 cut(s)	144, 168, 975, 1641
BstACI	GRCGYC	2 cut(s)	1263, 1455
BstAUI	TGTACA	1 cut(s)	624
BstBAI	YACGTR	3 cut(s)	265, 1377, 1597
BstDEI	CTNAG	9 cut(s)	80, 90, 310, 873, 1084, 1336, 1537, 1768, 1901
BstDSI	CCRYGG	2 cut(s)	1753, 1885
BstEII	GGTNACC	2 cut(s)	1601, 1612
BstF5I	GGATG	5 cut(s)	64, 604, 1018, 1179, 1845
BstFNI	CGCG	1 cut(s)	1460
BstH2I	RGCGCY	2 cut(s)	1299, 1458
BstHHI	GCGC	2 cut(s)	1298, 1457
BstKTI	GATC	7 cut(s)	33, 96, 551, 618, 700, 898, 959
BstMAI	GTCTC	5 cut(s)	129, 869, 1096, 1339, 1490
BstMBI	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
BstMWI	GCNNNNNNNGC	2 cut(s)	1260, 1454
BstNI	CCWGG	4 cut(s)	993, 1125, 1582, 1610
BstNSI	RCATGY	1 cut(s)	869
BstPAI	GACNNNNGTC	1 cut(s)	1262
BstPI	GGTNACC	2 cut(s)	1601, 1612
BstSCI	CCNGG	5 cut(s)	255, 991, 1123, 1580, 1608
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	2 cut(s)	262, 1323
BstUI	CGCG	1 cut(s)	1460
BstV1I	GCAGC	2 cut(s)	29, 1159
BstV2I	GAAGAC	2 cut(s)	1163, 1583
BstX2I	RGATCY	1 cut(s)	895
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	895
BsuRI	GGCC	6 cut(s)	571, 738, 1181, 1280, 1502, 1643
BtgI	CCRYGG	2 cut(s)	1753, 1885
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	5 cut(s)	64, 604, 1018, 1179, 1845
BtsIMutI	CAGTG	3 cut(s)	627, 1182, 1836
CfoI	GCGC	2 cut(s)	1298, 1457
Cfr10I	RCCGGY	2 cut(s)	347, 1624
CseI	GACGC	3 cut(s)	974, 1252, 1449
Csp6I	GTAC	7 cut(s)	625, 660, 841, 1052, 1081, 1378, 1825
CspAI	ACCGGT	2 cut(s)	347, 1624
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CviAII	CATG	6 cut(s)	770, 866, 892, 1754, 1873, 1886
CviQI	GTAC	7 cut(s)	625, 660, 841, 1052, 1081, 1378, 1825
DdeI	CTNAG	9 cut(s)	80, 90, 310, 873, 1084, 1336, 1537, 1768, 1901
DinI	GGCGCC	1 cut(s)	1456
DpnI	GATC	7 cut(s)	32, 95, 550, 617, 699, 897, 958
DpnII	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
DraI	TTTAAA	1 cut(s)	522
DraIII	CACNNNGTG	2 cut(s)	268, 745
EaeI	YGGCCR	3 cut(s)	1179, 1500, 1641
Eam1104I	CTCTTC	4 cut(s)	144, 168, 975, 1641
EarI	CTCTTC	4 cut(s)	144, 168, 975, 1641
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	1900
Eco130I	CCWWGG	3 cut(s)	1055, 1753, 1885
Eco24I	GRGCYC	1 cut(s)	1902
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	1297
Eco53kI	GAGCTC	1 cut(s)	1900
Eco57I	CTGAAG	4 cut(s)	480, 798, 956, 1530
Eco72I	CACGTG	2 cut(s)	265, 1597
Eco91I	GGTNACC	2 cut(s)	1601, 1612
EcoICRI	GAGCTC	1 cut(s)	1900
EcoO65I	GGTNACC	2 cut(s)	1601, 1612
EcoRI	GAATTC	1 cut(s)	1217
EcoRII	CCWGG	4 cut(s)	991, 1123, 1580, 1608
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	1055, 1753, 1885
EcoT38I	GRGCYC	1 cut(s)	1902
EgeI	GGCGCC	1 cut(s)	1456
EheI	GGCGCC	1 cut(s)	1456
ErhI	CCWWGG	3 cut(s)	1055, 1753, 1885
Esp3I	CGTCTC	1 cut(s)	1490
FaeI	CATG	6 cut(s)	773, 869, 895, 1757, 1876, 1889
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 502, 534
FatI	CATG	6 cut(s)	769, 865, 891, 1753, 1872, 1885
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	43, 1148, 1458, 1545
FokI	GGATG	5 cut(s)	51, 611, 1025, 1186, 1832
FriOI	GRGCYC	1 cut(s)	1902
Fsp4HI	GCNGC	4 cut(s)	43, 1148, 1458, 1545
FspBI	CTAG	8 cut(s)	23, 54, 71, 393, 441, 714, 1385, 1521
GlaI	GCGC	2 cut(s)	1297, 1456
GluI	GCNGC	4 cut(s)	43, 1148, 1458, 1545
GsaI	CCCAGC	1 cut(s)	1871
GsuI	CTGGAG	2 cut(s)	1047, 1749
HaeII	RGCGCY	2 cut(s)	1299, 1458
HaeIII	GGCC	6 cut(s)	571, 738, 1181, 1280, 1502, 1643
HapII	CCGG	5 cut(s)	179, 256, 348, 1617, 1625
HgaI	GACGC	3 cut(s)	974, 1252, 1449
HhaI	GCGC	2 cut(s)	1298, 1457
Hin1I	GRCGYC	2 cut(s)	1263, 1455
Hin1II	CATG	6 cut(s)	773, 869, 895, 1757, 1876, 1889
Hin6I	GCGC	2 cut(s)	1296, 1455
HinP1I	GCGC	2 cut(s)	1296, 1455
HincII	GTYRAC	2 cut(s)	1357, 1399
HindII	GTYRAC	2 cut(s)	1357, 1399
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	5 cut(s)	582, 1159, 1836, 1893, 1922
HpaI	GTTAAC	1 cut(s)	1357
HpaII	CCGG	5 cut(s)	179, 256, 348, 1617, 1625
Hpy166II	GTNNAC	9 cut(s)	292, 307, 343, 627, 1321, 1357, 1399, 1564, 1827
Hpy188I	TCNGA	6 cut(s)	120, 460, 697, 874, 1339, 1717
Hpy188III	TCNNGA	4 cut(s)	424, 919, 1208, 1385
Hpy8I	GTNNAC	9 cut(s)	292, 307, 343, 627, 1321, 1357, 1399, 1564, 1827
Hpy99I	CGWCG	2 cut(s)	1352, 1397
HpyAV	CCTTC	6 cut(s)	44, 178, 728, 1042, 1270, 1477
HpyCH4III	ACNGT	5 cut(s)	7, 1186, 1348, 1403, 1831
HpyCH4IV	ACGT	7 cut(s)	264, 339, 1317, 1328, 1376, 1395, 1596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1260, 1454
HpyF3I	CTNAG	9 cut(s)	80, 90, 310, 873, 1084, 1336, 1537, 1768, 1901
HpySE526I	ACGT	7 cut(s)	264, 339, 1317, 1328, 1376, 1395, 1596
Hsp92I	GRCGYC	2 cut(s)	1263, 1455
Hsp92II	CATG	6 cut(s)	773, 869, 895, 1757, 1876, 1889
HspAI	GCGC	2 cut(s)	1296, 1455
KasI	GGCGCC	1 cut(s)	1454
KpnI	GGTACC	1 cut(s)	1055
Ksp22I	TGATCA	1 cut(s)	697
KspAI	GTTAAC	1 cut(s)	1357
Kzo9I	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
LguI	GCTCTTC	2 cut(s)	168, 975
LmnI	GCTCC	3 cut(s)	1028, 1749, 1779
Lsp1109I	GCAGC	2 cut(s)	29, 1159
LweI	GCATC	2 cut(s)	54, 814
MaeI	CTAG	8 cut(s)	23, 54, 71, 393, 441, 714, 1385, 1521
MaeII	ACGT	7 cut(s)	264, 339, 1317, 1328, 1376, 1395, 1596
MaeIII	GTNAC	7 cut(s)	1190, 1403, 1461, 1601, 1612, 1627, 1696
MalI	GATC	7 cut(s)	32, 95, 550, 617, 699, 897, 958
MboI	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
MfeI	CAATTG	3 cut(s)	573, 981, 1797
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	3 cut(s)	262, 1323, 1902
MlsI	TGGCCA	2 cut(s)	1181, 1643
MluNI	TGGCCA	2 cut(s)	1181, 1643
Mly113I	GGCGCC	1 cut(s)	1455
MlyI	GAGTC	2 cut(s)	1153, 1931
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	2 cut(s)	1181, 1643
MscI	TGGCCA	2 cut(s)	1181, 1643
MseI	TTAA	6 cut(s)	375, 521, 1116, 1239, 1356, 1556
MslI	CAYNNNNRTG	2 cut(s)	593, 1758
Msp20I	TGGCCA	2 cut(s)	1181, 1643
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	5 cut(s)	179, 256, 348, 1617, 1625
MspR9I	CCNGG	5 cut(s)	257, 993, 1125, 1582, 1610
MunI	CAATTG	3 cut(s)	573, 981, 1797
Mva1269I	GAATGC	2 cut(s)	471, 536
MvaI	CCWGG	4 cut(s)	993, 1125, 1582, 1610
MvnI	CGCG	1 cut(s)	1460
MwoI	GCNNNNNNNGC	2 cut(s)	1260, 1454
NarI	GGCGCC	1 cut(s)	1455
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	2 cut(s)	1753, 1885
NdeII	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
NlaIII	CATG	6 cut(s)	773, 869, 895, 1757, 1876, 1889
NlaIV	GGNNCC	6 cut(s)	316, 897, 1053, 1234, 1456, 1751
NmeAIII	GCCGAG	2 cut(s)	1512, 1540
NmuCI	GTSAC	3 cut(s)	1461, 1612, 1696
NspI	RCATGY	1 cut(s)	869
PciSI	GCTCTTC	2 cut(s)	168, 975
PctI	GAATGC	2 cut(s)	471, 536
PfeI	GAWTC	3 cut(s)	582, 1836, 1893
PfoI	TCCNGGA	1 cut(s)	991
PinAI	ACCGGT	2 cut(s)	347, 1624
PkrI	GCNGC	4 cut(s)	44, 1149, 1459, 1546
PleI	GAGTC	2 cut(s)	1153, 1930
PluTI	GGCGCC	1 cut(s)	1458
PmaCI	CACGTG	2 cut(s)	265, 1597
PmlI	CACGTG	2 cut(s)	265, 1597
PpsI	GAGTC	2 cut(s)	1153, 1930
Ppu21I	YACGTR	3 cut(s)	265, 1377, 1597
PshAI	GACNNNNGTC	1 cut(s)	1262
PshBI	ATTAAT	1 cut(s)	1116
Psp124BI	GAGCTC	1 cut(s)	1902
Psp1406I	AACGTT	1 cut(s)	1328
Psp6I	CCWGG	4 cut(s)	991, 1123, 1580, 1608
PspCI	CACGTG	2 cut(s)	265, 1597
PspEI	GGTNACC	2 cut(s)	1601, 1612
PspFI	CCCAGC	1 cut(s)	1867
PspGI	CCWGG	4 cut(s)	991, 1123, 1580, 1608
PspN4I	GGNNCC	6 cut(s)	316, 897, 1053, 1234, 1456, 1751
PsuI	RGATCY	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	7 cut(s)	626, 661, 842, 1053, 1082, 1379, 1826
RsaNI	GTAC	7 cut(s)	625, 660, 841, 1052, 1081, 1378, 1825
RseI	CAYNNNNRTG	2 cut(s)	593, 1758
SacI	GAGCTC	1 cut(s)	1902
SapI	GCTCTTC	2 cut(s)	168, 975
SaqAI	TTAA	6 cut(s)	375, 521, 1116, 1239, 1356, 1556
SatI	GCNGC	4 cut(s)	43, 1148, 1458, 1545
Sau3AI	GATC	7 cut(s)	30, 93, 548, 615, 697, 895, 956
SchI	GAGTC	2 cut(s)	1153, 1931
ScrFI	CCNGG	5 cut(s)	257, 993, 1125, 1582, 1610
SduI	GDGCHC	3 cut(s)	262, 1323, 1902
SfaNI	GCATC	2 cut(s)	54, 814
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	1456
SmiMI	CAYNNNNRTG	2 cut(s)	593, 1758
SmlI	CTYRAG	2 cut(s)	197, 217
SmoI	CTYRAG	2 cut(s)	197, 217
SpeI	ACTAGT	2 cut(s)	53, 713
SsiI	CCGC	6 cut(s)	243, 253, 279, 1458, 1544, 1606
SspDI	GGCGCC	1 cut(s)	1454
SspMI	CTAG	8 cut(s)	23, 54, 71, 393, 441, 714, 1385, 1521
SstI	GAGCTC	1 cut(s)	1902
StyD4I	CCNGG	5 cut(s)	255, 991, 1123, 1580, 1608
StyI	CCWWGG	3 cut(s)	1055, 1753, 1885
TaaI	ACNGT	5 cut(s)	7, 1186, 1348, 1403, 1831
TaiI	ACGT	7 cut(s)	267, 342, 1320, 1331, 1379, 1398, 1599
TaqI	TCGA	5 cut(s)	165, 171, 274, 1392, 1896
TatI	WGTACW	2 cut(s)	624, 840
TauI	GCSGC	2 cut(s)	1460, 1547
TfiI	GAWTC	3 cut(s)	582, 1836, 1893
Tru1I	TTAA	6 cut(s)	375, 521, 1116, 1239, 1356, 1556
Tru9I	TTAA	6 cut(s)	375, 521, 1116, 1239, 1356, 1556
TscAI	CASTG	3 cut(s)	634, 1189, 1836
TseFI	GTSAC	3 cut(s)	1461, 1612, 1696
TseI	GCWGC	2 cut(s)	42, 1147
Tsp45I	GTSAC	3 cut(s)	1461, 1612, 1696
TspDTI	ATGAA	5 cut(s)	146, 626, 758, 921, 1448
TspGWI	ACGGA	2 cut(s)	1325, 1338
TspRI	CASTG	3 cut(s)	634, 1189, 1836
VneI	GTGCAC	1 cut(s)	1319
VspI	ATTAAT	1 cut(s)	1116
XapI	RAATTY	5 cut(s)	419, 451, 691, 941, 1217
XbaI	TCTAGA	1 cut(s)	1384
XceI	RCATGY	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1760
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	8 cut(s)	23, 54, 71, 393, 441, 714, 1385, 1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.