Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Reverse (-)

8192673 .. 8194770

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCATCTTCGCTATCGTTCCTAGCGTCTTCTCAGCAGCTATGGCTGCGTCCTAAACTCGTGGGAGTGGCGGCGACTCCGTTCCCAAGGACTCAGTCTCGGTCTCTCGTCGTGGAAGCCAAAGCCACCACCAAAAGAGTAGACAGGACCGCCCGCCATACCCGTATCAGAAAGAAGGTTGAAGGGACTCCCGAAAGGCCAAGATTAGCTGTCTTCCGCTCCCACAAGCATATCTATGTCCAAGTGATTGATGACACCAAGATGCACACACTTGCTTCGGCTTCAACAATGCAGAAACCCATCTCCGAAGAATTTGACTACACTTCTGGTCCTACCGTTATTGAGACATGCAGAAAAGTTGAGAATATGTTAATGCGTTTTGACAGAAGTGGAACTCGCGTTCGAGTTCTACCATTCCACTCTGCGTTGGCTCAAGGATCAAGGCTCGCAAATATGGAGGAGTTCACCAACTCTAATTCAGAGGAAGTCTCACAGTTTTTGGTTTGCACTGATAGAGCATCGCGTGGAATTGATTTTTCGGTGATATTCATCGATCGATCATGTTGTACTCTTCAACTTCCCTCGCGATACAAGTATGTGCGACGTGTAGGAAGAACAACCAGAGGTGCTGTAGGAATAGGGAAGGCATTCATCTTTGTGATGGGGAAACAAGTCTCCCTTGCCGGAAAGATAATGGAAAGAAACCGAAAAGGTCACCCGGTGCATGATGTACCAGCTGCGTATGAGCTTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

253

Amino Acids

28.48

Weight (kDa)

10.33

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	3 cut(s)	399, 523, 586
AciI	CCGC	4 cut(s)	71, 150, 154, 217
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	568, 732
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	182, 285, 575
AjiI	CACGTC	1 cut(s)	605
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	40, 209, 737, 748
AluI	AGCT	4 cut(s)	40, 209, 737, 748
Alw26I	GTCTC	5 cut(s)	102, 108, 338, 493, 679
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	3 cut(s)	37, 46, 737
ApoI	RAATTY	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	647
AspS9I	GGNCC	2 cut(s)	147, 329
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	3 cut(s)	457, 553, 707
AvaII	GGWCC	2 cut(s)	147, 329
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	21, 205
BbvI	GCAGC	3 cut(s)	33, 49, 724
BccI	CCATC	2 cut(s)	308, 655
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	5 cut(s)	102, 108, 338, 493, 679
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	4 cut(s)	38, 47, 72, 738
BlsI	GCNGC	4 cut(s)	39, 48, 73, 739
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	2 cut(s)	147, 329
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	147, 329
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	2 cut(s)	252, 527
BpiI	GAAGAC	2 cut(s)	21, 205
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	719
Bsa29I	ATCGAT	2 cut(s)	552, 556
BsaBI	GATNNNNATC	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	548
BseCI	ATCGAT	2 cut(s)	552, 556
BseDI	CCNNGG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	47, 107
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	33, 49, 724
Bsh1236I	CGCG	3 cut(s)	399, 523, 586
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	199
BshVI	ATCGAT	2 cut(s)	552, 556
BsiEI	CGRYCG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	684, 719
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	5 cut(s)	102, 108, 338, 493, 679
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	437, 553, 557
Bsp68I	TCGCGA	1 cut(s)	586
BspACI	CCGC	4 cut(s)	71, 150, 154, 217
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	46, 106
BspDI	ATCGAT	2 cut(s)	552, 556
BspFNI	CGCG	3 cut(s)	399, 523, 586
BspPI	GGATC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	437, 553, 557
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	337, 495
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	154, 447
BstDEI	CTNAG	2 cut(s)	33, 93
BstEII	GGTNACC	1 cut(s)	713
BstFNI	CGCG	3 cut(s)	399, 523, 586
BstKTI	GATC	3 cut(s)	440, 556, 560
BstMAI	GTCTC	5 cut(s)	102, 108, 338, 493, 679
BstMBI	GATC	3 cut(s)	437, 553, 557
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 46
BstNSI	RCATGY	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	717
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	3 cut(s)	399, 523, 586
BstV1I	GCAGC	3 cut(s)	33, 49, 724
BstV2I	GAAGAC	2 cut(s)	21, 205
Bsu15I	ATCGAT	2 cut(s)	552, 556
BsuRI	GGCC	1 cut(s)	199
BsuTUI	ATCGAT	2 cut(s)	552, 556
BtgZI	GCGATG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	507
BtuMI	TCGCGA	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	154, 447
Cfr13I	GGNCC	2 cut(s)	147, 329
ClaI	ATCGAT	2 cut(s)	552, 556
CseI	GACGC	2 cut(s)	15, 38
Csp6I	GTAC	2 cut(s)	567, 731
CviAII	CATG	3 cut(s)	348, 561, 725
CviQI	GTAC	2 cut(s)	567, 731
DdeI	CTNAG	2 cut(s)	33, 93
DpnI	GATC	3 cut(s)	439, 555, 559
DpnII	GATC	3 cut(s)	437, 553, 557
DraIII	CACNNNGTG	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	147, 329
Eco91I	GGTNACC	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	351, 564, 728
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	347, 560, 724
FauI	CCCGC	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	38, 47, 72, 738
Fsp4HI	GCNGC	4 cut(s)	38, 47, 72, 738
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	4 cut(s)	38, 47, 72, 738
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	2 cut(s)	684, 719
HgaI	GACGC	2 cut(s)	15, 38
Hin1II	CATG	3 cut(s)	351, 564, 728
HinfI	GANTC	3 cut(s)	76, 91, 187
HpaII	CCGG	2 cut(s)	684, 719
HphI	GGTGA	3 cut(s)	457, 553, 707
Hpy166II	GTNNAC	2 cut(s)	142, 465
Hpy188I	TCNGA	3 cut(s)	170, 307, 481
Hpy188III	TCNNGA	2 cut(s)	191, 585
Hpy8I	GTNNAC	2 cut(s)	142, 465
Hpy99I	CGWCG	2 cut(s)	113, 606
HpyAV	CCTTC	3 cut(s)	169, 176, 637
HpyCH4III	ACNGT	2 cut(s)	337, 495
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	5 cut(s)	265, 292, 351, 507, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 46
HpyF3I	CTNAG	2 cut(s)	33, 93
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	351, 564, 728
Kzo9I	GATC	3 cut(s)	437, 553, 557
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	130, 312, 634, 697, 732, 747
Lsp1109I	GCAGC	3 cut(s)	33, 49, 724
LweI	GCATC	2 cut(s)	252, 527
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	3 cut(s)	439, 555, 559
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	3 cut(s)	437, 553, 557
MboII	GAAGA	5 cut(s)	21, 205, 320, 563, 624
MluCI	AATT	3 cut(s)	311, 475, 528
MlyI	GAGTC	3 cut(s)	70, 85, 181
MnlI	CCTC	4 cut(s)	451, 475, 592, 617
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	2 cut(s)	371, 757
MslI	CAYNNNNRTG	3 cut(s)	234, 260, 656
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	2 cut(s)	684, 719
MspR9I	CCNGG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	647
MvnI	CGCG	3 cut(s)	399, 523, 586
MwoI	GCNNNNNNNGC	2 cut(s)	43, 46
NciI	CCSGG	1 cut(s)	719
NdeII	GATC	3 cut(s)	437, 553, 557
NlaIII	CATG	3 cut(s)	351, 564, 728
NmuCI	GTSAC	1 cut(s)	713
NruI	TCGCGA	1 cut(s)	586
NspI	RCATGY	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	39, 48, 73, 739
Ple19I	CGATCG	1 cut(s)	556
PleI	GAGTC	3 cut(s)	70, 85, 181
PpsI	GAGTC	3 cut(s)	70, 85, 181
PspEI	GGTNACC	1 cut(s)	713
PspPI	GGNCC	2 cut(s)	147, 329
PsyI	GACNNNGTC	1 cut(s)	94
PvuI	CGATCG	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	737
RruI	TCGCGA	1 cut(s)	586
RsaI	GTAC	2 cut(s)	568, 732
RsaNI	GTAC	2 cut(s)	567, 731
RseI	CAYNNNNRTG	3 cut(s)	234, 260, 656
SaqAI	TTAA	2 cut(s)	371, 757
SatI	GCNGC	4 cut(s)	38, 47, 72, 738
Sau3AI	GATC	3 cut(s)	437, 553, 557
Sau96I	GGNCC	2 cut(s)	147, 329
SchI	GAGTC	3 cut(s)	70, 85, 181
ScrFI	CCNGG	1 cut(s)	719
SetI	ASST	8 cut(s)	42, 180, 211, 607, 628, 715, 739, 750
SfaNI	GCATC	2 cut(s)	252, 527
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	147, 329
SmiMI	CAYNNNNRTG	3 cut(s)	234, 260, 656
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	3 cut(s)	311, 475, 528
SsiI	CCGC	4 cut(s)	71, 150, 154, 217
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	337, 495
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	403, 552, 556
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	311, 475, 528
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	371, 757
Tru9I	TTAA	2 cut(s)	371, 757
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	3 cut(s)	37, 46, 737
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	538, 640
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	147, 329
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.