Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270803.1

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Reverse (-)

57 .. 765

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggctcatttcttggtttttcaggttgaaggaactaccgaaaggccaagactatgtgtcttccgctccaacaagcatctctatgtccaagtgattgatgataccaagatgcatacacttgcttcagcttcaacaatgcagaagcccatctctgaggagtttgacttcacttctggtccaaccattgaagtagcaaagaaggtgggagaagtcattgcaaagtcatgtttggagaaagggatcacaaaggtagccttcgaccgaggtggctatccgtatcatggacgtgtggaagcccttgctactgctgctagggagaatggccttcaattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

111

Amino Acids

12.35

Weight (kDa)

7.82

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	66
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	29, 132, 188, 329
AhdI	GACNNNNNGTC	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	287
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	44, 322
ApeKI	GCWGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	176
BmsI	GCATC	2 cut(s)	85, 99
BpiI	GAAGAC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	46, 324
BsiEI	CGRYCG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	281
BsnI	GGCC	2 cut(s)	46, 324
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	46, 324
BspCNI	CTCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	46, 324
BtrI	CACGTC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	2 cut(s)	225, 281
CviJI	RGCY	8 cut(s)	5, 46, 128, 145, 254, 270, 296, 324
CviKI_1	RGCY	8 cut(s)	5, 46, 128, 145, 254, 270, 296, 324
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DriI	GACNNNNNGTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	114
FaeI	CATG	2 cut(s)	228, 284
FaiI	YATR	5 cut(s)	55, 84, 114, 226, 282
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	2 cut(s)	224, 280
Fnu4HI	GCNGC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	46, 324
Hin1II	CATG	2 cut(s)	228, 284
Hpy188I	TCNGA	2 cut(s)	154, 335
HpyAV	CCTTC	4 cut(s)	23, 193, 265, 335
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	112, 139, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	228, 284
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	8, 159
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	85, 99
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	286
MalI	GATC	1 cut(s)	242
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	52
MluCI	AATT	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	93, 203
MnlI	CCTC	2 cut(s)	148, 257
Mph1103I	ATGCAT	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	81, 285
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	2 cut(s)	228, 284
NsiI	ATGCAT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	81, 285
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	176
SetI	ASST	6 cut(s)	27, 130, 204, 252, 268, 289
SfaNI	GCATC	2 cut(s)	85, 99
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	81, 285
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	329
TseI	GCWGC	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.