Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Reverse (-)

8189859 .. 8191290

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCAGCTTCGCTATCGTTCCTAGCGTCTTCTCAGCAGCTATGGCTGCGTCCTAAGCTCGTGGGAGTGGCGGCGACTCCGTTCCCAAGGACTCAGTCTCGGTCTCTTGTCGTGGAAGCCAAAGCCACCACCAAAAGAGAAGACAGGACCGCCCGCCATACCCGTATCAGAAAGAAGGTTGAAGGGACTCCCGAAAGGCCAAGATTAGCTGTCTTCCGCTCCCACAAGCATATCTATGTCCAAGTGATTGATGACACCAAGATGCATACACTTGCTTCGGCTTCAACAATGCAGAAACCCATCTCCGAAGAATTTGACTACACTTCTGGTCCTACCGTTGAAGTAGCAAAGAAGGTAGGAGAAGTCATTGCAAAGTCTTGTTTGGAGAAAGGGATCTCAAAGGTGGCCTTTGACCGCGGTGGATACCCATATCATGGACGTGTGCAAGCCCTTGCTGATGCAGCCAGAGAACACGGCCTTCAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

163

Amino Acids

18.04

Weight (kDa)

10.04

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	1 cut(s)	417
AciI	CCGC	6 cut(s)	71, 150, 154, 217, 415, 417
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	182, 285, 341
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	4 cut(s)	8, 40, 58, 209
AluI	AGCT	4 cut(s)	8, 40, 58, 209
Alw26I	GTCTC	2 cut(s)	102, 108
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	3 cut(s)	197, 405, 475
ApeKI	GCWGC	3 cut(s)	37, 46, 461
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	147, 329
AvaII	GGWCC	2 cut(s)	147, 329
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	3 cut(s)	21, 147, 205
BbvI	GCAGC	3 cut(s)	33, 49, 473
BccI	CCATC	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	102, 108
BfaI	CTAG	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	38, 47, 72, 462
BlsI	GCNGC	4 cut(s)	39, 48, 73, 463
Bme18I	GGWCC	2 cut(s)	147, 329
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	147, 329
BmsI	GCATC	2 cut(s)	252, 448
BpiI	GAAGAC	3 cut(s)	21, 147, 205
Bpu10I	CCTNAGC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	86, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	86, 415
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	47, 107
BseXI	GCAGC	3 cut(s)	33, 49, 473
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	199, 407, 477
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	102, 108
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	199, 407, 477
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	6 cut(s)	71, 150, 154, 217, 415, 417
BspANI	GGCC	3 cut(s)	199, 407, 477
BspCNI	CTCAG	2 cut(s)	46, 106
BspFNI	CGCG	1 cut(s)	417
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	86, 415
BssMI	GATC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	6, 154, 447
BstDEI	CTNAG	3 cut(s)	33, 54, 93
BstDSI	CCRYGG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	2 cut(s)	102, 108
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 43, 46, 55, 461
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	33, 49, 473
BstV2I	GAAGAC	3 cut(s)	21, 147, 205
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	199, 407, 477
BtgI	CCRYGG	1 cut(s)	415
BtrI	CACGTC	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	6, 154, 447
Cfr13I	GGNCC	2 cut(s)	147, 329
Cfr42I	CCGCGG	1 cut(s)	418
CseI	GACGC	2 cut(s)	15, 38
CviAII	CATG	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	33, 54, 93
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	147, 329
Eco57I	CTGAAG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	437
FaiI	YATR	7 cut(s)	43, 159, 231, 237, 267, 430, 435
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	433
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	4 cut(s)	38, 47, 72, 462
Fsp4HI	GCNGC	4 cut(s)	38, 47, 72, 462
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	4 cut(s)	38, 47, 72, 462
HaeIII	GGCC	3 cut(s)	199, 407, 477
HgaI	GACGC	2 cut(s)	15, 38
Hin1II	CATG	1 cut(s)	437
HinfI	GANTC	3 cut(s)	76, 91, 187
Hpy188I	TCNGA	2 cut(s)	170, 307
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	169, 176, 346, 488
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	265, 292, 371, 445, 461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 43, 46, 55, 461
HpyF3I	CTNAG	3 cut(s)	33, 54, 93
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	437
KspI	CCGCGG	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	18, 130, 312, 478
Lsp1109I	GCAGC	3 cut(s)	33, 49, 473
LweI	GCATC	2 cut(s)	252, 448
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	439
MalI	GATC	1 cut(s)	395
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	1 cut(s)	393
MboII	GAAGA	4 cut(s)	21, 152, 205, 320
MflI	RGATCY	1 cut(s)	393
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	70, 85, 181
Mph1103I	ATGCAT	1 cut(s)	267
MslI	CAYNNNNRTG	3 cut(s)	234, 260, 438
MspA1I	CMGCKG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	10, 43, 46, 55, 461
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	39, 48, 73, 463
PleI	GAGTC	3 cut(s)	70, 85, 181
PpsI	GAGTC	3 cut(s)	70, 85, 181
PspPI	GGNCC	2 cut(s)	147, 329
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	234, 260, 438
SacII	CCGCGG	1 cut(s)	418
SatI	GCNGC	4 cut(s)	38, 47, 72, 462
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	2 cut(s)	147, 329
SchI	GAGTC	3 cut(s)	70, 85, 181
SetI	ASST	8 cut(s)	10, 42, 60, 180, 211, 357, 405, 442
SfaNI	GCATC	2 cut(s)	252, 448
Sfr303I	CCGCGG	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	147, 329
SmiMI	CAYNNNNRTG	3 cut(s)	234, 260, 438
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	6 cut(s)	71, 150, 154, 217, 415, 417
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	442
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	37, 46, 461
TspGWI	ACGGA	1 cut(s)	69
Tth111I	GACNNNGTC	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	147, 329
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.