Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009599.1

Orthogroup ID

OG0009178

Physical Location & Seq

Genomic Coordinates Reverse (-)

43984 .. 45482

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009599.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtcagcgtctctttcgttcattgggtcttcacaacagctatggatgcgtcccaagtttgtaggagtatccgctcccaggcctcaatctcagtctctagttatcgaagccaaggccactaccaaaagagaagacaggaccgctcgccatactcgtatcagaaagaaggttgaaggaactaccgaaaggccaagactatgtgtcttccgctccaacaagcatctctatgtccaagtgattgatgataccaagatgcatacacttgcttcagcttcaacaatgcagaagcccatctctgaggagtttgacttcacttctggtccaaccattgaagtagcaaagaaggtgggagaagtcattgcaaagtcatgtttggagaaagggatcacaaaggtagccttcgaccgaggtggctatccgtatcatggacgtgtggaagcccttgctactgctgctagggagaatggccttcaattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

159

Amino Acids

17.71

Weight (kDa)

9.9

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48350
fragaria_vesca	FvH4_4g21870
malus_domestica	MD13G1136100.v1.1 MD16G1131500.v1.1
prunus_persica	Prupe.1G209300_v2.0.a1 Prupe.1G209300_v2.0.a1
pyrus_communis	pycom13g11860 pycom13g11870 pycom16g11590
rosa_chinensis	RchiOBHm_Chr4g0428131
rosa_laevigata	RLG00000007179
rosa_multiflora	Rmu_co8270803.1_g000001 Rmu_sc0004940.1_g000013 Rmu_sc0009599.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369840
rosa_rugosa	Rorug04G0222500 Rorug04G0222500 Rorug04G0222600
rosa_samantha	Rh4BG285200 Rh4CG300800 Rh4DG282300
rosa_wichuraiana	Rw4G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	74, 143, 210
AciI	CCGC	3 cut(s)	72, 141, 208
AclWI	GGATC	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	78, 425
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	173, 276, 332, 473
AhdI	GACNNNNNGTC	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	40, 272
AluI	AGCT	2 cut(s)	40, 272
Alw26I	GTCTC	2 cut(s)	15, 99
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	4 cut(s)	80, 114, 188, 466
ApeKI	GCWGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	138, 320
AvaII	GGWCC	2 cut(s)	138, 320
BbsI	GAAGAC	3 cut(s)	21, 138, 196
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	15, 99
BfaI	CTAG	2 cut(s)	98, 456
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	2 cut(s)	138, 320
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	138, 320
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	36, 229, 243
BpiI	GAAGAC	3 cut(s)	21, 138, 196
BsaJI	CCNNGG	3 cut(s)	77, 111, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 425
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	77, 111, 406
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	78, 425
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	104, 288
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	4 cut(s)	82, 116, 190, 468
BsiEI	CGRYCG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	78, 425
BsmAI	GTCTC	2 cut(s)	15, 99
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	4 cut(s)	82, 116, 190, 468
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	3 cut(s)	72, 141, 208
BspANI	GGCC	4 cut(s)	82, 116, 190, 468
BspCNI	CTCAG	2 cut(s)	103, 289
BspPI	GGATC	1 cut(s)	392
BsrBI	CCGCTC	3 cut(s)	74, 143, 210
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	77, 111, 406
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	90, 297
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	2 cut(s)	15, 99
BstMBI	GATC	1 cut(s)	384
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 452
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	3 cut(s)	21, 138, 196
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	82, 116, 190, 468
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	138, 320
CseI	GACGC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	2 cut(s)	369, 425
DdeI	CTNAG	2 cut(s)	90, 297
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
DriI	GACNNNNNGTC	1 cut(s)	200
Eam1105I	GACNNNNNGTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	138, 320
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	372, 428
FaiI	YATR	7 cut(s)	43, 150, 199, 228, 258, 370, 426
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	368, 424
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	98, 456
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	82, 116, 190, 468
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	372, 428
Hpy188I	TCNGA	3 cut(s)	161, 298, 479
HpyAV	CCTTC	5 cut(s)	160, 167, 337, 409, 479
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	256, 283, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 452
HpyF3I	CTNAG	2 cut(s)	90, 297
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	372, 428
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	79, 215
LpnPI	CCDG	4 cut(s)	64, 91, 121, 303
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	3 cut(s)	36, 229, 243
MaeI	CTAG	2 cut(s)	98, 456
MaeII	ACGT	1 cut(s)	430
MalI	GATC	1 cut(s)	386
MbiI	CCGCTC	3 cut(s)	74, 143, 210
MboI	GATC	1 cut(s)	384
MboII	GAAGA	3 cut(s)	21, 143, 196
MluCI	AATT	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	237, 347
MnlI	CCTC	3 cut(s)	93, 292, 401
Mph1103I	ATGCAT	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	225, 429
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	46, 452
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	372, 428
NsiI	ATGCAT	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	138, 320
RseI	CAYNNNNRTG	2 cut(s)	225, 429
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	2 cut(s)	138, 320
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	7 cut(s)	42, 171, 274, 348, 396, 412, 433
SfaNI	GCATC	3 cut(s)	36, 229, 243
SinI	GGWCC	2 cut(s)	138, 320
SmiMI	CAYNNNNRTG	2 cut(s)	225, 429
Sse9I	AATT	1 cut(s)	473
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	72, 141, 208
SspMI	CTAG	2 cut(s)	98, 456
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	105, 402
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	473
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	138, 320
XspI	CTAG	2 cut(s)	98, 456
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.