AT1G48630

Guanine nucleotide-binding protein subunit beta-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010922
Physical Location & Seq
Reverse (-)
17981636 .. 17983377
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48630.1

Sequence Viewer

Length: 981 bp
ATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGATATGGTCACCGCCATTGCTACACCGGTCGATAACTCCGACGTGATTGTAACTTCGTCGCGTGACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCATACGGTGTTGCTCAGCGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAATTCGCTCTCTCCGGATCTTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCTACCGGAGAATCTACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACCGATAACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACGCTTGGTGAGTGTAAGTATACCATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAGGTTTAGTCCTAATACTCTTGTGCCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAAGGTCTGGAATCTTCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTTGAACACTGTGGCTGTGTCACCTGATGGTTCGTTGTGTGCCAGTGGTGGCAAAGATGGTGTGATCTTGCTTTGGGATTTGGCTGAAGGGAAGAAGTTGTATTCTCTTGAAGCTGGCTCTATTATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGTTGTGTGCAGCAACAGAGAATAGCATTAGGATTTGGGATCTCGAGAGTAAGTCTGTTGTTGAGGATTTGAAGGTTGATCTTAAGGCTGAGGCTGAAAAGACTGATGGTTCTACTGGAATCGGAAACAAGACCAAGGTGATCTACTGCACAAGCTTGAACTGGAGTGCAGATGGAAACACTTTGTTCAGTGGATACACTGATGGAGTTATCAGGGTTTGGGGTATTGGTCGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003735 GO:0005078 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006417 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010608 GO:0010646 GO:0010647 GO:0016020 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022613 GO:0022622 GO:0022626 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0032947 GO:0032991 GO:0033993 GO:0034248 GO:0035591 GO:0042221 GO:0042254 GO:0042325 GO:0042327 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043408 GO:0043410 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045937 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060255 GO:0060263 GO:0060267 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1990904 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko05162 map05162
Pfam Domains
Protein Families
WD40

Protein Analysis

326

Amino Acids

35.8

Weight (kDa)

6.66

Isoelectric Point (pI)

22.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 8 - 161 6e-28 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 8 - 100 5.2e-07 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 10 - 137 9.8e-15 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 10 - 140 8.1e-07 SCAP Beta-propeller
WD40_Prp19 PF24814 10 - 98 5.2e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 10 - 138 2.4e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 11 - 133 2.9e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 11 - 222 8.1e-25 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 11 - 133 8.9e-12 G protein beta WD-40 repeat protein
Beta-prop_EML PF23409 13 - 134 2.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 22 - 133 1.4e-07 WDR55
WD40 PF00400 56 - 91 6.8e-08 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 56 - 200 3.1e-27 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 59 - 270 3.7e-46 WDR5 beta-propeller domain
EIF3I PF24805 59 - 143 2.2e-07 EIF3I
WD40_MABP1-WDR62_2nd PF24782 61 - 182 7.5e-13 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 73 - 279 1.2e-37 Prp19 WD40 domain
WD40 PF00400 96 - 133 1.2e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 100 - 185 7.4e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 104 - 273 1.9e-31 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 105 - 189 1.5e-10 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 117 - 224 1.6e-07 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 118 - 272 4.2e-13 WDR36/Utp21 first beta-propeller
WD40 PF00400 137 - 179 7.4e-09 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 142 - 272 4.7e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 142 - 271 2.2e-21 WDR3 first beta-propeller domain
WDR55 PF24796 142 - 267 3.4e-09 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 143 - 274 8.5e-12 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 144 - 321 4.9e-15 G protein beta WD-40 repeat protein
EIF3I PF24805 147 - 322 1.7e-15 EIF3I
Beta-prop_EML PF23409 147 - 322 7.3e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 164 - 321 6.7e-13 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP PF24017 165 - 261 3.7e-09 SCAP Beta-propeller
WD40 PF00400 184 - 221 9.3e-09 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 187 - 309 1.7e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 193 - 273 2.6e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 2 cut(s) 57, 169
AclWI GGATC 3 cut(s) 250, 279, 789
AcuI CTGAAG 5 cut(s) 27, 450, 524, 690, 709
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 2 cut(s) 382, 740
AfiI CCNNNNNNNGG 1 cut(s) 246
AflII CTTAAG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 6 cut(s) 22, 200, 589, 695, 814, 901
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 6 cut(s) 259, 391, 434, 553, 698, 897
AluI AGCT 6 cut(s) 259, 391, 434, 553, 698, 897
Alw26I GTCTC 2 cut(s) 269, 367
AlwI GGATC 3 cut(s) 250, 279, 789
Ama87I CYCGRG 1 cut(s) 785
Aor13HI TCCGGA 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 752
AsiGI ACCGGT 1 cut(s) 70
AsuHPI GGTGA 5 cut(s) 46, 266, 419, 597, 892
AvaI CYCGRG 1 cut(s) 785
BaeGI GKGCMC 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BauI CACGAG 2 cut(s) 14, 372
BbsI GAAGAC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 1 cut(s) 764
BccI CCATC 8 cut(s) 215, 431, 431, 605, 635, 842, 908, 938
BciVI GTATCC 1 cut(s) 929
BcoDI GTCTC 2 cut(s) 269, 367
BfaI CTAG 1 cut(s) 979
BfrI CTTAAG 1 cut(s) 824
BfuI GTATCC 1 cut(s) 929
BisI GCNGC 1 cut(s) 753
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 754
BmeT110I CYCGRG 1 cut(s) 785
BmgBI CACGTC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 925
Bpu10I CCTNAGC 2 cut(s) 554, 831
Bpu1102I GCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 3 cut(s) 70, 239, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 5 cut(s) 184, 627, 746, 862, 908
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 2 cut(s) 120, 180
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 179, 822
BseNI ACTGG 5 cut(s) 184, 627, 746, 862, 908
BseRI GAGGAG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 764
BsgI GTGCAG 3 cut(s) 771, 874, 930
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 75
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 3 cut(s) 71, 240, 282
BsiWI CGTACG 1 cut(s) 380
BslFI GGGAC 2 cut(s) 263, 714
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 269, 367
BsmBI CGTCTC 2 cut(s) 269, 367
BsmFI GGGAC 2 cut(s) 263, 714
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 2 cut(s) 57, 169
BspCNI CTCAG 2 cut(s) 178, 823
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 1 cut(s) 106
BspPI GGATC 3 cut(s) 250, 279, 789
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 5 cut(s) 184, 627, 746, 862, 908
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
BssNAI GTATAC 1 cut(s) 420
BssSI CACGAG 2 cut(s) 14, 372
BssT1I CCWWGG 1 cut(s) 876
Bst1107I GTATAC 1 cut(s) 420
Bst2BI CACGAG 2 cut(s) 14, 372
Bst4CI ACNGT 5 cut(s) 158, 254, 353, 523, 595
BstAFI CTTAAG 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 3 cut(s) 165, 554, 831
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 2 cut(s) 120, 180
BstFNI CGCG 1 cut(s) 106
BstKTI GATC 8 cut(s) 245, 274, 360, 379, 651, 784, 823, 885
BstMAI GTCTC 2 cut(s) 269, 367
BstMBI GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
BstMCI CGRYCG 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 3 cut(s) 242, 271, 781
BstYI RGATCY 3 cut(s) 242, 271, 781
BstZ17I GTATAC 1 cut(s) 420
BsuI GTATCC 1 cut(s) 929
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 120, 180
BtsIMutI CAGTG 5 cut(s) 42, 591, 634, 937, 939
Cac8I GCNNGC 1 cut(s) 700
Cfr10I RCCGGY 1 cut(s) 70
Csp6I GTAC 2 cut(s) 381, 739
CspAI ACCGGT 1 cut(s) 70
CviQI GTAC 2 cut(s) 381, 739
DdeI CTNAG 3 cut(s) 165, 554, 831
DpnI GATC 8 cut(s) 244, 273, 359, 378, 650, 783, 822, 884
DpnII GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
DraIII CACNNNGTG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 876
Eco57I CTGAAG 5 cut(s) 27, 450, 524, 690, 709
Eco88I CYCGRG 1 cut(s) 785
Eco91I GGTNACC 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 876
Esp3I CGTCTC 2 cut(s) 269, 367
FaiI YATR 3 cut(s) 50, 154, 420
FaqI GGGAC 2 cut(s) 263, 714
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 2 cut(s) 107, 187
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 1 cut(s) 979
GluI GCNGC 1 cut(s) 753
GsuI CTGGAG 1 cut(s) 925
HapII CCGG 3 cut(s) 71, 240, 282
HindIII AAGCTT 3 cut(s) 389, 551, 895
HinfI GANTC 4 cut(s) 12, 287, 535, 861
HpaII CCGG 3 cut(s) 71, 240, 282
HphI GGTGA 5 cut(s) 46, 266, 419, 597, 892
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 6 cut(s) 85, 220, 357, 430, 543, 866
Hpy188III TCNNGA 8 cut(s) 127, 200, 240, 374, 532, 692, 785, 787
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 3 cut(s) 89, 106, 300
HpyAV CCTTC 3 cut(s) 520, 665, 808
HpyCH4III ACNGT 5 cut(s) 158, 254, 353, 523, 595
HpyCH4IV ACGT 2 cut(s) 87, 204
HpyCH4V TGCA 3 cut(s) 752, 891, 911
HpyF3I CTNAG 3 cut(s) 165, 554, 831
HpySE526I ACGT 2 cut(s) 87, 204
Kpn2I TCCGGA 1 cut(s) 239
Kzo9I GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
Lsp1109I GCAGC 1 cut(s) 764
MaeI CTAG 1 cut(s) 979
MaeII ACGT 2 cut(s) 87, 204
MalI GATC 8 cut(s) 244, 273, 359, 378, 650, 783, 822, 884
MboI GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
MboII GAAGA 3 cut(s) 155, 530, 688
MflI RGATCY 3 cut(s) 242, 271, 781
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 227, 544
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 134, 165, 226, 799, 826
MroI TCCGGA 1 cut(s) 239
MseI TTAA 2 cut(s) 387, 825
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 169
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 3 cut(s) 71, 240, 282
MvnI CGCG 1 cut(s) 106
NdeII GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
NmuCI GTSAC 7 cut(s) 52, 107, 182, 308, 440, 572, 603
PaeR7I CTCGAG 1 cut(s) 785
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 201
PfeI GAWTC 3 cut(s) 287, 535, 861
Pfl23II CGTACG 1 cut(s) 380
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 52
PspLI CGTACG 1 cut(s) 380
PsuI RGATCY 3 cut(s) 242, 271, 781
RsaI GTAC 2 cut(s) 382, 740
RsaNI GTAC 2 cut(s) 381, 739
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 387, 825
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 8 cut(s) 242, 271, 357, 376, 648, 781, 820, 882
SchI GAGTC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 785
SlaI CTCGAG 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 785, 824
SmoI CTYRAG 2 cut(s) 785, 824
Sse9I AATT 2 cut(s) 227, 544
SsiI CCGC 2 cut(s) 57, 169
SspMI CTAG 1 cut(s) 979
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 5 cut(s) 158, 254, 353, 523, 595
TaiI ACGT 2 cut(s) 90, 207
TaqI TCGA 2 cut(s) 75, 786
TasI AATT 2 cut(s) 227, 544
TfiI GAWTC 3 cut(s) 287, 535, 861
Tru1I TTAA 2 cut(s) 387, 825
Tru9I TTAA 2 cut(s) 387, 825
TscAI CASTG 5 cut(s) 49, 598, 634, 937, 946
TseFI GTSAC 7 cut(s) 52, 107, 182, 308, 440, 572, 603
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 7 cut(s) 52, 107, 182, 308, 440, 572, 603
TspDTI ATGAA 1 cut(s) 701
TspRI CASTG 5 cut(s) 49, 598, 634, 937, 946
Vha464I CTTAAG 1 cut(s) 824
XhoI CTCGAG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.