Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010922

Physical Location & Seq

Genomic Coordinates Forward (+)

23213650 .. 23215006

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGCCCACCATCGTCTCGGCCTCGTGGGACAAGACTGTGAAAGTCTGGAACTTGTCCAACTGCAAGCTGAGGAACACCCTTGAGGGCCACAATGGGTATGTGAACACCGTCGCGGTTTCTCCTGATGGTTCATTGTGCGCCAGCGGAGGCAAAGACGGAGTTATTCTGCTCTGGGATTTGGCGGAGGGCAAGAGGCTGTATCATCTCGAGGCCGGCTCCATAATCCACGCTCTCTGCTTCAGTCCCAACAGGTACTGGCTGTGTGCCGCAACCGAGCAAAGCATCAAGATTTGGGACTTGGAGAGTAAGTCCATTGTGGAGGAGTTGAAGATCGATCTGAAGACTGAGGCTGAGAAGACTGAGGATACCCATGCTGCTACTTCATACAAGAAGAAGGTTATCTACTGTACGAGTTTGAACTGGAGCGCTGATGGCAGCACCTTGTTCAGTGGCTACACCGACGGAGTTATCAGAGTCTGGGGTATCGGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003735 GO:0005078 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006417 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010608 GO:0010646 GO:0010647 GO:0016020 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022613 GO:0022622 GO:0022626 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0032947 GO:0032991 GO:0033993 GO:0034248 GO:0035591 GO:0042221 GO:0042254 GO:0042325 GO:0042327 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043408 GO:0043410 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045937 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060255 GO:0060263 GO:0060267 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05162 map05162

Pfam Domains

Protein Families

WD40

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

6.41

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18080 AT1G48630 AT3G18130
fragaria_vesca	FvH4_5g17060
malus_domestica	MD00G1160700.v1.1 MD14G1233800.v1.1
prunus_persica	Prupe.5G230000_v2.0.a1
pyrus_communis	pycom06g19990 pycom06g20000 pycom14g19480
rosa_chinensis	RchiOBHm_Chr7g0178791
rosa_multiflora	Rmu_sc0015029.1_g000003 Rmu_sc0025325.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274610
rosa_rugosa	Rorug06G0419700
rosa_samantha	Rh7AG019000 Rh7BG018300 Rh7CG019100 Rh7DG018900
rosa_wichuraiana	Rw7G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	116, 147, 185, 270
AcuI	CTGAAG	2 cut(s)	226, 362
AfaI	GTAC	2 cut(s)	257, 412
AfeI	AGCGCT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	331, 421
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	22
AlwNI	CAGNNNCTG	2 cut(s)	258, 480
Ama87I	CYCGRG	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	3 cut(s)	21, 88, 213
ApeKI	GCWGC	3 cut(s)	4, 377, 438
AspLEI	GCGC	2 cut(s)	143, 431
AspS9I	GGNCC	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	209
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	2 cut(s)	350, 365
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	16, 364, 450
BccI	CCATC	3 cut(s)	20, 122, 428
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	5, 270, 378, 439
BlsI	GCNGC	4 cut(s)	6, 271, 379, 440
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	350, 365
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	263, 428
BseCI	ATCGAT	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	62, 339, 345, 354
BseNI	ACTGG	2 cut(s)	263, 428
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	16, 364, 450
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	3 cut(s)	23, 90, 215
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	493
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	3 cut(s)	44, 231, 311
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	3 cut(s)	44, 231, 311
BsnI	GGCC	3 cut(s)	23, 90, 215
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	333, 337
BspACI	CCGC	4 cut(s)	116, 147, 185, 270
BspANI	GGCC	3 cut(s)	23, 90, 215
BspCNI	CTCAG	4 cut(s)	63, 340, 346, 355
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	263, 428
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	2 cut(s)	333, 337
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	40, 112, 410
BstC8I	GCNNGC	3 cut(s)	68, 145, 217
BstDEI	CTNAG	4 cut(s)	71, 348, 354, 363
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	143, 431
BstKTI	GATC	2 cut(s)	336, 340
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	333, 337
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	16, 364, 450
BstV2I	GAAGAC	2 cut(s)	350, 365
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	23, 90, 215
BsuTUI	ATCGAT	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	68, 145, 217
CaiI	CAGNNNCTG	2 cut(s)	258, 480
CfoI	GCGC	2 cut(s)	143, 431
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	256, 411
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	2 cut(s)	256, 411
DdeI	CTNAG	4 cut(s)	71, 348, 354, 363
DpnI	GATC	2 cut(s)	335, 339
DpnII	GATC	2 cut(s)	333, 337
EciI	GGCGGA	1 cut(s)	200
Eco47III	AGCGCT	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	226, 362
Eco88I	CYCGRG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	377
FaiI	YATR	4 cut(s)	102, 224, 375, 388
FaqI	GGGAC	3 cut(s)	44, 231, 311
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	5, 270, 378, 439
Fsp4HI	GCNGC	4 cut(s)	5, 270, 378, 439
GlaI	GCGC	2 cut(s)	142, 430
GluI	GCNGC	4 cut(s)	5, 270, 378, 439
GsuI	CTGGAG	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	23, 90, 215
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	2 cut(s)	143, 431
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	2 cut(s)	141, 429
HinP1I	GCGC	2 cut(s)	141, 429
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	342, 476
Hpy188III	TCNNGA	4 cut(s)	49, 125, 209, 289
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	116, 467
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	3 cut(s)	40, 112, 410
HpyCH4V	TGCA	2 cut(s)	4, 66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	4 cut(s)	71, 348, 354, 363
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	2 cut(s)	141, 429
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	333, 337
LmnI	GCTCC	2 cut(s)	224, 426
LpnPI	CCDG	9 cut(s)	34, 138, 157, 160, 229, 238, 244, 409, 466
Lsp1109I	GCAGC	3 cut(s)	16, 364, 450
LweI	GCATC	1 cut(s)	294
MalI	GATC	2 cut(s)	335, 339
MboI	GATC	2 cut(s)	333, 337
MboII	GAAGA	4 cut(s)	343, 355, 370, 406
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	84
MroNI	GCCGGC	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	435
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	333, 337
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	6, 271, 379, 440
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	258, 480
RsaI	GTAC	2 cut(s)	257, 412
RsaNI	GTAC	2 cut(s)	256, 411
SatI	GCNGC	4 cut(s)	5, 270, 378, 439
Sau3AI	GATC	2 cut(s)	333, 337
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	486
SetI	ASST	4 cut(s)	72, 257, 402, 446
SfaNI	GCATC	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	83, 209
SmoI	CTYRAG	2 cut(s)	83, 209
SsiI	CCGC	4 cut(s)	116, 147, 185, 270
TaaI	ACNGT	3 cut(s)	40, 112, 410
TaqI	TCGA	2 cut(s)	210, 336
TaqII	GACCGA	1 cut(s)	479
TauI	GCSGC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	3 cut(s)	4, 377, 438
TspDTI	ATGAA	2 cut(s)	123, 375
TspGWI	ACGGA	2 cut(s)	174, 480
TspRI	CASTG	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.