AT1G48760

Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011187
Physical Location & Seq
Reverse (-)
18035967 .. 18039405
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48760.2

Sequence Viewer

Length: 2610 bp
ATGTCGTCGTCTTCCACTTCTATAATGGACAACTTGTTCCAACGAAGTCTCGAGGATCTAATCAAAGGCTTTCGTCTCCAGCTTCTCGGAGAATCCAATTTCATTTCTAGAGCCGTTGAAGAAATCCGCCGCGAGATCAAAGCCACAGATCTCTCAACTAAATCCACCGCTCTTCACAAGCTCTCTTACCTCGCCGCACTTCACGGCGTCGACATGTCTTGGGCCGCGTTTCACGCCGTAGAAGTCGTGTCTTCTTCACGATTCCAACACAAGAGGATCGGTTACCAAGCAATTACTCAATCATTCAACGATCAGACCTCGGTTATGCTTCTGATCACTAACCAGGTGAGAAAGGATTTGAATAGTGCTAATGAATACGAGGTTAGTCTAGCTTTGGAATGTTTGTCTAGGATCGGAACTCATGACCTAGCTAGAGATTTGACTCCTGAAGTGTTTACTCTCCTGGGTAGTAGTAAATCTTTCGTGAAGAAGAAAGCAATTGGTGTGGTTTTGAGGGTTTTTGAGAAGTATCATGATGCTGTTAAGGTGTGTTTTAAACGTCTAGTTGAGAATCTTGAAACCTCTGATCCGCAGATTCTGTCTGCTGTAGTTGGAGTGTTCTGTGAGCTTGCTACAAAGGATCCTCAGTCTTGTCTTCCTTTAGCTCCTGAGTTCTATAAAGTATTGGTTGATTCAAGGAATAATTGGGTTCTGATCAAGGTTCTTAAGATATTTGCTAAGTTGGCCTTGATTGAACCGAGATTGGGTAAGAAGGTTGCTGAGCCGATTTGTGAACATATGAGGAGGACTGTGGCAAAGTCTCTGGTTTTTGAGTGTGTTCGAACCGTGGTGAGTAGCTTGAGTGATAACGAAGCGGCTGTGAAACTTGCTGTTGCAAAGATCCGGGAGTTTCTGGTGGAAGATGATCCAAATCTTAAGTATCTCGGTCTTAACGCCTTGTCGATTGTTGCTCCTAAGCATTTGTGGGCAGTTTTGGAGAACAAAGAGGTAGTCGTCAAGGCTATGAGCGATGAGGATCCAAATGTTAAACTCGAGGCATTGCATCTCTTAATGGCAATGGTGAATGAAGATAATGTGTCGGAAATCTCCAGGATTCTTATGAATTATGCACTCAAGTCAGACCCTTTGTTCTGCAATGAGATTATTTTTTCTGTCTTATCGGCATGCTCCAGGAATGCATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGGTGAAATGGCTAGAATCCCACATTGTCAAAGAGGGGAAGATATTGAGCATCAGTTGATCGATATCGGTATGAGGGTCAGAGATGCTAGACCACAGCTAGTCCGTGTTTCTTGGGCACTGCTCATTGATCCTGCATTGCTCGGTAACTTGTTCTTACACCCTATACTATCTGCAGCTGCGTGGGTTTCAGGTGAATACGTTGAGTTCTCTAAGAATCCGTATGAAACTGTGGAGGCGCTTCTGCAACCACGAACTGATCTCTTACCCCCCTCCATAAAAGCTATCTATATACATTCAGCTTTCAAAGTTCTTGTCTTCTGTCTGGGGTCTTACTTCTCGTCCCAGGAACCCACTTCGTCATCCTTGGCTCAGGAATCAAGTTCTGGCTCTTTGTTGGTGAATGTTTTCACACATGAATCTATATTGAGTCTGGTGAATGTGATTGAGCTTGGTTTGGGGCCTTTATCTGGATACCATGATGTGGAAGTGCAGGAGAGAGCTAAGAATGTTTTAGGATACATCAGTGTGATAAAGCAAGAAATAGCTGAGCAATTAAATCTCCAAGACAACGAAACAGAAGCTTCTAGAGTTACAGCATTCATGGAAGATGTGTTCTCAGAAGAGTTTGGTCCTATTTCTGCAACTGCACAAGAAAAGGTTTGTGTACCGGATGGGTTAGAGCTGAAAGAGAATCTCGGGGATCTGGAGGAGATCTGTGGGGAACATCTTAAACCCGTGGAATCGGATTCGGTTTCATACACAGACAAGATCAGCTTCTCTGTCTCCAAACTCAGAATCAGAGATCAACAAGAAGCCACTTCATCTTCATCTCCTCCACATGAAGCTTCATCTCTGCTAGCTGAACACCGTAAACGCCATGGAATGTATTATCTTACTTCTCAAAAGGAGGATCAAGATAGCAACGGCACGTCAAGCGATTATCCTCTGGCAAATGAATTAGCAAACGAGATATCCCAGGATTCATTTAACCCCAAGAGAAAGCCAAACCAATCTAAACCACGGCCTGTAGTGGTGAAACTAGACGATGGAGATGAATCAAGAATCACTCCTCAAGCAAAAACAAATATACAGACTGCTAATGATGATGAATCTTTGTCCCGAGCGATCCAAAGCGCTCTTCTGGTAAAGAACAAGGGAAAAGAAAAAGATAGGTACGAGGGAAATCCGAATTCAGGACAACAGGAAAAAGAAGAGAGCTCGAGGATAGAAAATCATCAGAACTCAGAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGGGAGAGGGAAGTAGTAAGCACAAATCACGACGGCAAAATGAAGTAGCTTCTGCTTCAGAACAAGTTATAATTCCAGATTTTCTCTTGTGA

Protein Analysis

869

Amino Acids

97.15

Weight (kDa)

5.83

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 32 - 538 1.9e-86 Adaptin N terminal region
Cnd1 PF12717 129 - 272 3.8e-07 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48760 AT1G48760 AT1G48760
fragaria_vesca FvH4_5g11850
malus_domestica MD06G1218100.v1.1 MD14G1228200.v1.1
prunus_persica Prupe.5G223200_v2.0.a1
pyrus_communis pycom06g19420 pycom14g18960
rosa_chinensis RchiOBHm_Chr7g0185741
rosa_laevigata RLG00000004886
rosa_multiflora Rmu_sc0002121.1_g000007 Rmu_sc0002952.1_g000005
rosa_roxburghii Rroxscaffold_3G00268650
rosa_rugosa Rorug06G0471100
rosa_samantha Rh7AG071300 Rh7BG076600 Rh7CG076600 Rh7DG076400
rosa_wichuraiana Rw7G006380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2588
AccB7I CCANNNNNTGG 1 cut(s) 1723
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 210
AccII CGCG 2 cut(s) 132, 227
AciI CCGC 7 cut(s) 127, 130, 168, 195, 225, 590, 875
AcsI RAATTY 1 cut(s) 2431
AcuI CTGAAG 2 cut(s) 468, 2559
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 1908, 2417
AfeI AGCGCT 1 cut(s) 2377
AfiI CCNNNNNNNGG 4 cut(s) 764, 1709, 1723, 2435
AflII CTTAAG 2 cut(s) 725, 935
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 7 cut(s) 119, 307, 361, 578, 696, 755, 1546
AjiI CACGTC 1 cut(s) 2172
AjnI CCWGG 6 cut(s) 342, 462, 1109, 1190, 1584, 2217
AjuI GAANNNNNNNTTGG 2 cut(s) 2364, 2396
AloI GAACNNNNNNTCC 4 cut(s) 20, 52, 1838, 1870
Alw21I GWGCWC 1 cut(s) 2462
Alw26I GTCTC 5 cut(s) 53, 80, 825, 1239, 2029
AlwNI CAGNNNCTG 1 cut(s) 598
Ama87I CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
Aor51HI AGCGCT 1 cut(s) 2377
AoxI GGCC 4 cut(s) 222, 744, 1700, 2264
ApeKI GCWGC 2 cut(s) 1415, 1418
ApoI RAATTY 1 cut(s) 2431
ArsI GACNNNNNNTTYG 4 cut(s) 996, 1028, 1539, 1571
Asp700I GAANNNNTTC 1 cut(s) 1646
AspLEI GCGC 2 cut(s) 1480, 2378
AspS9I GGNCC 3 cut(s) 222, 1700, 1871
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 8 cut(s) 358, 862, 1093, 1256, 1445, 1651, 1687, 2287
AsuII TTCGAA 1 cut(s) 841
AsuNHI GCTAGC 1 cut(s) 2098
AvaI CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
AvaII GGWCC 1 cut(s) 1871
BaeGI GKGCMC 1 cut(s) 1360
BaeI ACNNNNGTAYC 2 cut(s) 1750, 1783
BamHI GGATCC 2 cut(s) 640, 1036
BanII GRGCYC 1 cut(s) 2462
BbsI GAAGAC 4 cut(s) 3, 243, 647, 1549
Bbv12I GWGCWC 1 cut(s) 2462
BbvI GCAGC 2 cut(s) 1405, 1427
BccI CCATC 2 cut(s) 1907, 2282
BceAI ACGGC 6 cut(s) 98, 220, 221, 2182, 2279, 2567
BciT130I CCWGG 6 cut(s) 344, 464, 1111, 1192, 1586, 2219
BciVI GTATCC 2 cut(s) 1706, 1751
BclI TGATCA 2 cut(s) 333, 714
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 5 cut(s) 53, 80, 825, 1239, 2029
BfmI CTRYAG 3 cut(s) 606, 1413, 2268
BfoI RGCGCY 2 cut(s) 1481, 2379
BfrI CTTAAG 2 cut(s) 725, 935
BfuI GTATCC 2 cut(s) 1706, 1751
BglII AGATCT 2 cut(s) 148, 1953
BisI GCNGC 6 cut(s) 130, 195, 225, 876, 1416, 1419
BlpI GCTNAGC 2 cut(s) 780, 1788
BlsI GCNGC 6 cut(s) 131, 196, 226, 877, 1417, 1420
Bme1390I CCNGG 7 cut(s) 344, 464, 905, 1111, 1192, 1586, 2219
Bme18I GGWCC 1 cut(s) 1871
BmeT110I CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
BmgBI CACGTC 1 cut(s) 2172
BmgT120I GGNCC 3 cut(s) 222, 1700, 1871
BmiI GGNNCC 4 cut(s) 642, 1038, 1590, 1701
BmrFI CCNGG 7 cut(s) 344, 464, 905, 1111, 1192, 1586, 2219
BmsI GCATC 4 cut(s) 526, 1072, 1300, 1315
BmtI GCTAGC 1 cut(s) 2102
BpiI GAAGAC 4 cut(s) 3, 243, 647, 1549
BpmI CTGGAG 4 cut(s) 62, 1093, 1174, 1967
Bpu10I CCTNAGC 2 cut(s) 975, 1611
Bpu1102I GCTNAGC 2 cut(s) 780, 1788
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 3 cut(s) 880, 1118, 2298
BpuMI CCSGG 1 cut(s) 905
Bsa29I ATCGAT 1 cut(s) 1302
BsaBI GATNNNNATC 3 cut(s) 930, 1035, 1304
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 9 cut(s) 318, 463, 846, 1584, 1605, 1977, 2119, 2217, 2261
BsaWI WCCGGW 1 cut(s) 1909
Bsc4I CCNNNNNNNGG 4 cut(s) 764, 1709, 1723, 2435
Bse3DI GCAATG 4 cut(s) 1058, 1083, 1162, 1376
Bse8I GATNNNNATC 3 cut(s) 930, 1035, 1304
BseBI CCWGG 6 cut(s) 344, 464, 1111, 1192, 1586, 2219
BseCI ATCGAT 1 cut(s) 1302
BseDI CCNNGG 9 cut(s) 318, 463, 846, 1584, 1605, 1977, 2119, 2217, 2261
BseGI GGATG 2 cut(s) 1601, 1918
BseJI GATNNNNATC 3 cut(s) 930, 1035, 1304
BseLI CCNNNNNNNGG 4 cut(s) 764, 1709, 1723, 2435
BseMI GCAATG 4 cut(s) 1058, 1083, 1162, 1376
BseMII CTCAG 8 cut(s) 659, 660, 771, 1625, 1779, 1872, 2047, 2499
BseRI GAGGAG 4 cut(s) 817, 1964, 2064, 2301
BseSI GKGCMC 1 cut(s) 1360
BseXI GCAGC 2 cut(s) 1405, 1427
BsgI GTGCAG 2 cut(s) 1751, 1872
Bsh1236I CGCG 2 cut(s) 132, 227
BshFI GGCC 4 cut(s) 224, 746, 1702, 2266
BshVI ATCGAT 1 cut(s) 1302
BsiHKAI GWGCWC 1 cut(s) 2462
BsiHKCI CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
BsiSI CCGG 2 cut(s) 904, 1910
BslFI GGGAC 2 cut(s) 1567, 2344
BslI CCNNNNNNNGG 4 cut(s) 764, 1709, 1723, 2435
BsmAI GTCTC 5 cut(s) 53, 80, 825, 1239, 2029
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 1567, 2344
BsmI GAATGC 2 cut(s) 1201, 1838
BsnI GGCC 4 cut(s) 224, 746, 1702, 2266
BsoBI CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 1360, 2462
Bsp1720I GCTNAGC 2 cut(s) 780, 1788
Bsp19I CCATGG 1 cut(s) 2119
BspACI CCGC 7 cut(s) 127, 130, 168, 195, 225, 590, 875
BspANI GGCC 4 cut(s) 224, 746, 1702, 2266
BspCNI CTCAG 8 cut(s) 658, 661, 772, 1624, 1780, 1871, 2046, 2498
BspDI ATCGAT 1 cut(s) 1302
BspFNI CGCG 2 cut(s) 132, 227
BspHI TCATGA 2 cut(s) 421, 532
BspLI GGNNCC 4 cut(s) 642, 1038, 1590, 1701
BspMAI CTGCAG 1 cut(s) 1417
BspOI GCTAGC 1 cut(s) 2102
BspQI GCTCTTC 2 cut(s) 177, 2385
BspT104I TTCGAA 1 cut(s) 841
BspTI CTTAAG 2 cut(s) 725, 935
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 4 cut(s) 1058, 1083, 1162, 1376
BssECI CCNNGG 9 cut(s) 318, 463, 846, 1584, 1605, 1977, 2119, 2217, 2261
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 1605, 2119
Bst2UI CCWGG 6 cut(s) 344, 464, 1111, 1192, 1586, 2219
Bst4CI ACNGT 4 cut(s) 811, 847, 1471, 2111
Bst6I CTCTTC 5 cut(s) 177, 1242, 1857, 2385, 2448
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 2 cut(s) 725, 935
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 3 cut(s) 630, 1186, 2100
BstDSI CCRYGG 4 cut(s) 846, 1977, 2119, 2261
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 2 cut(s) 1601, 1918
BstFNI CGCG 2 cut(s) 132, 227
BstH2I RGCGCY 2 cut(s) 1481, 2379
BstHHI GCGC 2 cut(s) 1480, 2378
BstMAI GTCTC 5 cut(s) 53, 80, 825, 1239, 2029
BstMWI GCNNNNNNNGC 3 cut(s) 233, 743, 2175
BstNI CCWGG 6 cut(s) 344, 464, 1111, 1192, 1586, 2219
BstNSI RCATGY 2 cut(s) 217, 1188
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 7 cut(s) 342, 462, 903, 1109, 1190, 1584, 2217
BstSFI CTRYAG 3 cut(s) 606, 1413, 2268
BstSLI GKGCMC 1 cut(s) 1360
BstUI CGCG 2 cut(s) 132, 227
BstV1I GCAGC 2 cut(s) 1405, 1427
BstV2I GAAGAC 4 cut(s) 3, 243, 647, 1549
BstX2I RGATCY 7 cut(s) 55, 148, 640, 900, 1036, 1942, 1953
BstYI RGATCY 7 cut(s) 55, 148, 640, 900, 1036, 1942, 1953
Bsu15I ATCGAT 1 cut(s) 1302
BsuI GTATCC 2 cut(s) 1706, 1751
BsuRI GGCC 4 cut(s) 224, 746, 1702, 2266
BsuTUI ATCGAT 1 cut(s) 1302
BtgI CCRYGG 4 cut(s) 846, 1977, 2119, 2261
BtgZI GCGATG 1 cut(s) 1044
BtrI CACGTC 1 cut(s) 2172
BtsCI GGATG 2 cut(s) 1601, 1918
BtsI GCAGTG 1 cut(s) 1358
BtsIMutI CAGTG 2 cut(s) 1358, 1771
Cac8I GCNNGC 3 cut(s) 630, 1186, 2100
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 2 cut(s) 421, 532
CfoI GCGC 2 cut(s) 1480, 2378
Cfr13I GGNCC 3 cut(s) 222, 1700, 1871
ClaI ATCGAT 1 cut(s) 1302
CseI GACGC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 1907, 2416
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 9 cut(s) 214, 422, 533, 1185, 1655, 1718, 1843, 2081, 2120
CviQI GTAC 2 cut(s) 1907, 2416
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 5 cut(s) 177, 1242, 1857, 2385, 2448
EarI CTCTTC 5 cut(s) 177, 1242, 1857, 2385, 2448
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 2460
Eco130I CCWWGG 2 cut(s) 1605, 2119
Eco24I GRGCYC 1 cut(s) 2462
Eco32I GATATC 2 cut(s) 1306, 2214
Eco47I GGWCC 1 cut(s) 1871
Eco47III AGCGCT 1 cut(s) 2377
Eco53kI GAGCTC 1 cut(s) 2460
Eco57I CTGAAG 2 cut(s) 468, 2559
Eco88I CYCGRG 5 cut(s) 50, 1052, 1937, 2361, 2461
Eco91I GGTNACC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 2460
EcoO109I RGGNCCY 1 cut(s) 1700
EcoO65I GGTNACC 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 2431
EcoRII CCWGG 6 cut(s) 342, 462, 1109, 1190, 1584, 2217
EcoRV GATATC 2 cut(s) 1306, 2214
EcoT14I CCWWGG 2 cut(s) 1605, 2119
EcoT22I ATGCAT 1 cut(s) 1201
EcoT38I GRGCYC 1 cut(s) 2462
ErhI CCWWGG 2 cut(s) 1605, 2119
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 9 cut(s) 217, 425, 536, 1188, 1658, 1721, 1846, 2084, 2123
FalI AAGNNNNNCTT 4 cut(s) 731, 763, 2000, 2032
FaqI GGGAC 2 cut(s) 1567, 2344
FatI CATG 9 cut(s) 213, 421, 532, 1184, 1654, 1717, 1842, 2080, 2119
FauNDI CATATG 2 cut(s) 798, 1201
FbaI TGATCA 2 cut(s) 333, 714
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 6 cut(s) 130, 195, 225, 876, 1416, 1419
FokI GGATG 2 cut(s) 1588, 1925
FriOI GRGCYC 1 cut(s) 2462
Fsp4HI GCNGC 6 cut(s) 130, 195, 225, 876, 1416, 1419
GlaI GCGC 2 cut(s) 1479, 2377
GluI GCNGC 6 cut(s) 130, 195, 225, 876, 1416, 1419
GsuI CTGGAG 4 cut(s) 62, 1093, 1174, 1967
HaeII RGCGCY 2 cut(s) 1481, 2379
HaeIII GGCC 4 cut(s) 224, 746, 1702, 2266
HapII CCGG 2 cut(s) 904, 1910
HgaI GACGC 1 cut(s) 196
HhaI GCGC 2 cut(s) 1480, 2378
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 9 cut(s) 217, 425, 536, 1188, 1658, 1721, 1846, 2084, 2123
Hin6I GCGC 2 cut(s) 1478, 2376
HinP1I GCGC 2 cut(s) 1478, 2376
HincII GTYRAC 2 cut(s) 211, 1216
HindII GTYRAC 2 cut(s) 211, 1216
HindIII AAGCTT 2 cut(s) 1821, 2085
HpaII CCGG 2 cut(s) 904, 1910
HphI GGTGA 8 cut(s) 358, 862, 1093, 1256, 1445, 1651, 1687, 2287
Hpy166II GTNNAC 6 cut(s) 211, 456, 794, 1216, 1907, 2114
Hpy8I GTNNAC 6 cut(s) 211, 456, 794, 1216, 1907, 2114
Hpy99I CGWCG 3 cut(s) 10, 212, 2553
HpyAV CCTTC 2 cut(s) 766, 2512
HpyCH4III ACNGT 4 cut(s) 811, 847, 1471, 2111
HpyCH4IV ACGT 3 cut(s) 559, 1440, 2171
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 743, 2175
HpySE526I ACGT 3 cut(s) 559, 1440, 2171
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 9 cut(s) 217, 425, 536, 1188, 1658, 1721, 1846, 2084, 2123
HspAI GCGC 2 cut(s) 1478, 2376
Ksp22I TGATCA 2 cut(s) 333, 714
LguI GCTCTTC 2 cut(s) 177, 2385
LmnI GCTCC 3 cut(s) 670, 976, 1193
Lsp1109I GCAGC 2 cut(s) 1405, 1427
LweI GCATC 4 cut(s) 526, 1072, 1300, 1315
MabI ACCWGGT 1 cut(s) 342
MaeII ACGT 3 cut(s) 559, 1440, 2171
MaeIII GTNAC 3 cut(s) 281, 1385, 1831
MbiI CCGCTC 1 cut(s) 170
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 7 cut(s) 55, 148, 640, 900, 1036, 1942, 1953
MhlI GDGCHC 2 cut(s) 1360, 2462
MluCI AATT 9 cut(s) 97, 291, 498, 703, 1123, 1793, 2198, 2431, 2589
MlyI GAGTC 2 cut(s) 436, 1678
MmeI TCCRAC 4 cut(s) 64, 289, 592, 1080
Mph1103I ATGCAT 1 cut(s) 1201
MroXI GAANNNNTTC 1 cut(s) 1646
MslI CAYNNNNRTG 1 cut(s) 1766
MspA1I CMGCKG 1 cut(s) 1418
MspCI CTTAAG 2 cut(s) 725, 935
MspI CCGG 2 cut(s) 904, 1910
MspR9I CCNGG 7 cut(s) 344, 464, 905, 1111, 1192, 1586, 2219
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 2 cut(s) 1201, 1838
MvaI CCWGG 6 cut(s) 344, 464, 1111, 1192, 1586, 2219
MvnI CGCG 2 cut(s) 132, 227
MwoI GCNNNNNNNGC 3 cut(s) 233, 743, 2175
NciI CCSGG 1 cut(s) 905
NcoI CCATGG 1 cut(s) 2119
NdeI CATATG 2 cut(s) 798, 1201
NheI GCTAGC 1 cut(s) 2098
NlaIII CATG 9 cut(s) 217, 425, 536, 1188, 1658, 1721, 1846, 2084, 2123
NlaIV GGNNCC 4 cut(s) 642, 1038, 1590, 1701
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 2 cut(s) 217, 1188
NspV TTCGAA 1 cut(s) 841
PaeI GCATGC 1 cut(s) 1188
PaeR7I CTCGAG 3 cut(s) 50, 1052, 2461
PagI TCATGA 2 cut(s) 421, 532
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 2 cut(s) 177, 2385
PctI GAATGC 2 cut(s) 1201, 1838
PdmI GAANNNNTTC 1 cut(s) 1646
PflMI CCANNNNNTGG 1 cut(s) 1723
PfoI TCCNGGA 3 cut(s) 903, 1109, 1190
PkrI GCNGC 6 cut(s) 131, 196, 226, 877, 1417, 1420
PleI GAGTC 2 cut(s) 436, 1677
PpsI GAGTC 2 cut(s) 436, 1677
PscI ACATGT 1 cut(s) 213
PsiI TTATAA 1 cut(s) 2588
Psp124BI GAGCTC 1 cut(s) 2462
Psp6I CCWGG 6 cut(s) 342, 462, 1109, 1190, 1584, 2217
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 6 cut(s) 342, 462, 1109, 1190, 1584, 2217
PspN4I GGNNCC 4 cut(s) 642, 1038, 1590, 1701
PspPI GGNCC 3 cut(s) 222, 1700, 1871
PspXI VCTCGAGB 2 cut(s) 1052, 2461
PstI CTGCAG 1 cut(s) 1417
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 7 cut(s) 55, 148, 640, 900, 1036, 1942, 1953
PvuII CAGCTG 1 cut(s) 1418
RsaI GTAC 2 cut(s) 1908, 2417
RsaNI GTAC 2 cut(s) 1907, 2416
RseI CAYNNNNRTG 1 cut(s) 1766
SacI GAGCTC 1 cut(s) 2462
SalI GTCGAC 1 cut(s) 209
SapI GCTCTTC 2 cut(s) 177, 2385
SatI GCNGC 6 cut(s) 130, 195, 225, 876, 1416, 1419
Sau96I GGNCC 3 cut(s) 222, 1700, 1871
SchI GAGTC 2 cut(s) 436, 1678
ScrFI CCNGG 7 cut(s) 344, 464, 905, 1111, 1192, 1586, 2219
SduI GDGCHC 2 cut(s) 1360, 2462
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 4 cut(s) 526, 1072, 1300, 1315
SfcI CTRYAG 3 cut(s) 606, 1413, 2268
Sfr274I CTCGAG 3 cut(s) 50, 1052, 2461
SfuI TTCGAA 1 cut(s) 841
SinI GGWCC 1 cut(s) 1871
SlaI CTCGAG 3 cut(s) 50, 1052, 2461
SmiMI CAYNNNNRTG 1 cut(s) 1766
SmlI CTYRAG 8 cut(s) 50, 725, 859, 935, 1052, 1133, 2313, 2461
SmoI CTYRAG 8 cut(s) 50, 725, 859, 935, 1052, 1133, 2313, 2461
SphI GCATGC 1 cut(s) 1188
Sse9I AATT 9 cut(s) 97, 291, 498, 703, 1123, 1793, 2198, 2431, 2589
SsiI CCGC 7 cut(s) 127, 130, 168, 195, 225, 590, 875
SstI GAGCTC 1 cut(s) 2462
StyD4I CCNGG 7 cut(s) 342, 462, 903, 1109, 1190, 1584, 2217
StyI CCWWGG 2 cut(s) 1605, 2119
TaaI ACNGT 4 cut(s) 811, 847, 1471, 2111
TaiI ACGT 3 cut(s) 562, 1443, 2174
TaqI TCGA 7 cut(s) 51, 210, 841, 962, 1053, 1302, 2462
TaqII GACCGA 1 cut(s) 935
TasI AATT 9 cut(s) 97, 291, 498, 703, 1123, 1793, 2198, 2431, 2589
TauI GCSGC 4 cut(s) 132, 197, 227, 878
TscAI CASTG 2 cut(s) 1365, 1771
TseI GCWGC 2 cut(s) 1415, 1418
TspGWI ACGGA 2 cut(s) 1334, 1449
TspRI CASTG 2 cut(s) 1365, 1771
Van91I CCANNNNNTGG 1 cut(s) 1723
Vha464I CTTAAG 2 cut(s) 725, 935
VpaK11BI GGWCC 1 cut(s) 1871
XapI RAATTY 1 cut(s) 2431
XbaI TCTAGA 2 cut(s) 107, 1826
XceI RCATGY 2 cut(s) 217, 1188
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 3 cut(s) 50, 1052, 2461
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 1646
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.