Rroxscaffold_3G00268650

Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011187
Physical Location & Seq
Reverse (-)
61724941 .. 61728249
3309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268650.1

Sequence Viewer

Length: 1824 bp
ATGGCGGGGTTCTCGGTGATGGACACTCTGTTCCAGCGCACACTGGACGACCTAATCAAGGGGCTCCGCCTCCAGCTGATCGGCGAGTCGGCGTTCCTCTCCAAAGCCCTAGACGAAATCCGCCGCGAGGCCAAGTCCACTGACCCCGACACCAAATCCGCCGCCCTCCTCAAGCTCACCTACCTCTCCTCCCTCCACTTCTACGACATGTCGTTCGCCGCCTTCCACGTCGTCGAGCTCCTCTCCTCCACCCGCTTCTCCCACAAGAAGATCGCCTACCACGCCGCCTCCCACTCCTTTGACGACTCCACGCCGGTGCTCGTCCTCATCACCAACCAGCTCCGCAAGGACCTCACCAGCACCAACGAGTTCGAGGTAAGCTTAGCGCTTGAATGCCTTTCCAGAATTGCCACTGTAGATCTGGCTAGGGATTTGACGCCTGAGATATTCACATTGCTGGCTAGCAGCAAAGTTTTCGTGAGAAAGAAGGCAGTTGGTGTGGTTCTGAGAGTGTTTGATAAGTATCCGGATTCGGTGAGGGTGTGTTTTAAGCGTTTGGTTGAGAATCTAGAGAGTTCGGATTCACAGGTTGTGTCTGTGGCTGTGGGGGTGTTTTGTGAGTTGGCTCTGAGAGATCCCAGGTCTTATCTTCCGCTGGCGCCGGAGTTTTACAAGATTTTGGTGGATTCCAAGAACAATTGGGTTTTGATTAAGGTGTTGAAGATATTTGCAAAGTTGGCTCCCTTAGAGCCGAGGTTGGCTAAGAGGGTTGTTGAGCCGGTTTGTGAGCATATAAGGAGGACTGGGGCTAAGTCATTGTTGTTTGAGTGCATTAGGACTGTGGTGAGCAGTTTGAGTGATTATGAACACGCGGTGAAGCTTGCTGTTGTCAAGATTCGGGAAATGTTGGTGGATGATGATCCGAATCTGAAGTATCTTGGGTTGCAAGCGCTTTCGGTTGTTGCCCCAAAGCACTTGTGGGTGGTGTTGGAGAATAAGGAGGTTGTGATTAAGTCTTTGAGTGATGTGGATCCAAATATTAAGCTCGAGTCGTTGCATCTTGTTATGGCAATGGTGTCTGAGAGTAATGTGGCTGAAATTTCAAGGGTTTTGGTCAACTATGCCCTTAAGTCTGATCCGGAGTTCTGCAATTTGATACTGGGTTCCATTTTATCGACATGTTGTAGAAATGTGTATGAGATTATTATTGACTTTGATTGGTATGTATCACTTCTGGGAGAAATGTCAAGGATACCACATTGCCAGAAAGGAGAAGAAATTGAAAAGCAGCTTATTGATATTGGTATGAGGGTCAAGGATGTTAGACCAGAGCTTGTTCGAGTCAGTCGTGATTTGCTGATTGATCCAGCATTACTGGGTAATCCTTTCTTACACAGGATATTATCAGCCGCTGCTTGGTTGTCAGGGGAATATGTTGAGTTCTCAGTAAACCCATTTGAACTCATGGAAGCACTATTACAGCCTCGTACAAGTCTCTTAGCACCGTTAATAAAAGCAATATATATACAGTCTGCGTTCAAAGTCTTAATCTTTTGTCTGAATTCTTACCTTTTGCTGAGGGGGAATGCTGCTTCCTCCTCGTATTCTGATAAATTGGTGCCAGATGTCCCAGGATTGTTCTCTGAACGGGATAGCGTAGGGTGTTTGGACTTGGCATCACGTGATGCTCCTGTTGAGGCCGAACTGGATGAAGGATTCAACCCAAGGGATTTAAATCAATCATTGGGAGGTCTTTCTGTAGAATATGGTGGGAGGAAACTTCTACTTGTGAGCAGGCATCTGCATCTGCATCTGCTTCATTGA

Protein Analysis

607

Amino Acids

68.01

Weight (kDa)

6.24

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 34 - 492 2.6e-82 Adaptin N terminal region
Cnd1 PF12717 127 - 270 1.6e-10 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48760 AT1G48760 AT1G48760
fragaria_vesca FvH4_5g11850
malus_domestica MD06G1218100.v1.1 MD14G1228200.v1.1
prunus_persica Prupe.5G223200_v2.0.a1
pyrus_communis pycom06g19420 pycom14g18960
rosa_chinensis RchiOBHm_Chr7g0185741
rosa_laevigata RLG00000004886
rosa_multiflora Rmu_sc0002121.1_g000007 Rmu_sc0002952.1_g000005
rosa_roxburghii Rroxscaffold_3G00268650
rosa_rugosa Rorug06G0471100
rosa_samantha Rh7AG071300 Rh7BG076600 Rh7CG076600 Rh7DG076400
rosa_wichuraiana Rw7G006380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 658, 1618
AccII CGCG 2 cut(s) 126, 872
AccIII TCCGGA 2 cut(s) 526, 1138
AclWI GGATC 6 cut(s) 629, 914, 1025, 1038, 1130, 1358
AcsI RAATTY 2 cut(s) 1098, 1561
AcuI CTGAAG 1 cut(s) 950
AcvI CACGTG 1 cut(s) 1682
AcyI GRCGYC 2 cut(s) 437, 659
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 1 cut(s) 1489
AfeI AGCGCT 2 cut(s) 387, 951
AfiI CCNNNNNNNGG 3 cut(s) 58, 127, 1416
AflII CTTAAG 1 cut(s) 1127
AflIII ACRYGT 2 cut(s) 207, 1178
AgsI TTSAA 7 cut(s) 392, 721, 1104, 1283, 1460, 1540, 1720
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 638, 1630
AleI CACNNNNGTG 1 cut(s) 314
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 9 cut(s) 76, 175, 238, 340, 381, 880, 1045, 1291, 1333
AluI AGCT 9 cut(s) 76, 175, 238, 340, 381, 880, 1045, 1291, 1333
Alw21I GWGCWC 2 cut(s) 240, 321
Alw26I GTCTC 1 cut(s) 1499
AlwI GGATC 6 cut(s) 629, 914, 1025, 1038, 1130, 1358
AlwNI CAGNNNCTG 1 cut(s) 1412
Ama87I CYCGRG 1 cut(s) 1046
Aor13HI TCCGGA 2 cut(s) 526, 1138
Aor51HI AGCGCT 2 cut(s) 387, 951
AoxI GGCC 2 cut(s) 129, 1698
ApeKI GCWGC 4 cut(s) 465, 1288, 1412, 1589
ApoI RAATTY 2 cut(s) 1098, 1561
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspLEI GCGC 4 cut(s) 39, 388, 661, 952
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 7 cut(s) 28, 169, 322, 346, 547, 856, 886
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 1 cut(s) 349
BamHI GGATCC 1 cut(s) 1030
BanI GGYRCC 2 cut(s) 658, 1618
BanII GRGCYC 2 cut(s) 66, 240
BarI GAAGNNNNNNTAC 4 cut(s) 260, 292, 1461, 1493
BbrPI CACGTG 1 cut(s) 1682
Bbv12I GWGCWC 2 cut(s) 240, 321
BbvCI CCTCAGC 1 cut(s) 1577
BbvI GCAGC 4 cut(s) 477, 1300, 1399, 1576
BccI CCATC 1 cut(s) 13
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 2 cut(s) 640, 1632
BciVI GTATCC 2 cut(s) 534, 1245
BcoDI GTCTC 1 cut(s) 1499
BfaI CTAG 4 cut(s) 110, 426, 462, 569
BfmI CTRYAG 2 cut(s) 414, 1758
BfoI RGCGCY 3 cut(s) 389, 662, 953
BfrI CTTAAG 1 cut(s) 1127
BfuI GTATCC 2 cut(s) 534, 1245
BglII AGATCT 1 cut(s) 418
BisI GCNGC 9 cut(s) 124, 162, 219, 285, 466, 1289, 1410, 1413, 1590
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 9 cut(s) 125, 163, 220, 286, 467, 1290, 1411, 1414, 1591
Bme1390I CCNGG 2 cut(s) 640, 1632
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 1046
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 6 cut(s) 65, 660, 741, 1032, 1165, 1620
BmrFI CCNGG 2 cut(s) 640, 1632
BmrI ACTGGG 3 cut(s) 813, 1169, 1385
BmsI GCATC 6 cut(s) 1066, 1675, 1685, 1807, 1813, 1819
BmtI GCTAGC 1 cut(s) 465
BmuI ACTGGG 3 cut(s) 813, 1169, 1385
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 1577
Bpu1102I GCTNAGC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 1682
BsaBI GATNNNNATC 5 cut(s) 522, 918, 924, 1029, 1734
BsaHI GRCGYC 2 cut(s) 437, 659
BsaJI CCNNGG 4 cut(s) 638, 752, 1630, 1724
BsaWI WCCGGW 2 cut(s) 526, 1138
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 127, 1416
Bse118I RCCGGY 2 cut(s) 313, 778
Bse1I ACTGG 5 cut(s) 48, 808, 1164, 1380, 1710
Bse3DI GCAATG 3 cut(s) 452, 1077, 1258
Bse8I GATNNNNATC 5 cut(s) 522, 918, 924, 1029, 1734
BseAI TCCGGA 2 cut(s) 526, 1138
BseBI CCWGG 2 cut(s) 640, 1632
BseDI CCNNGG 4 cut(s) 638, 752, 1630, 1724
BseGI GGATG 3 cut(s) 919, 1324, 1714
BseJI GATNNNNATC 5 cut(s) 522, 918, 924, 1029, 1734
BseLI CCNNNNNNNGG 3 cut(s) 58, 127, 1416
BseMI GCAATG 3 cut(s) 452, 1077, 1258
BseMII CTCAG 6 cut(s) 432, 497, 620, 1071, 1458, 1568
BseNI ACTGG 5 cut(s) 48, 808, 1164, 1380, 1710
BseRI GAGGAG 5 cut(s) 158, 178, 230, 235, 1588
BseXI GCAGC 4 cut(s) 477, 1300, 1399, 1576
Bsh1236I CGCG 2 cut(s) 126, 872
BshFI GGCC 2 cut(s) 131, 1700
BshNI GGYRCC 2 cut(s) 658, 1618
BsiHKAI GWGCWC 2 cut(s) 240, 321
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 5 cut(s) 314, 527, 662, 779, 1139
BslFI GGGAC 1 cut(s) 1613
BslI CCNNNNNNNGG 3 cut(s) 58, 127, 1416
BsmAI GTCTC 1 cut(s) 1499
BsmFI GGGAC 1 cut(s) 1613
BsmI GAATGC 2 cut(s) 398, 1591
BsnI GGCC 2 cut(s) 131, 1700
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 66, 240, 321
Bsp13I TCCGGA 2 cut(s) 526, 1138
Bsp143I GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
Bsp1720I GCTNAGC 1 cut(s) 382
BspANI GGCC 2 cut(s) 131, 1700
BspCNI CTCAG 6 cut(s) 433, 498, 621, 1072, 1457, 1569
BspEI TCCGGA 2 cut(s) 526, 1138
BspFNI CGCG 2 cut(s) 126, 872
BspLI GGNNCC 6 cut(s) 65, 660, 741, 1032, 1165, 1620
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 6 cut(s) 629, 914, 1025, 1038, 1130, 1358
BspT107I GGYRCC 2 cut(s) 658, 1618
BspTI CTTAAG 1 cut(s) 1127
BsrDI GCAATG 3 cut(s) 452, 1077, 1258
BsrFI RCCGGY 2 cut(s) 313, 778
BsrI ACTGG 5 cut(s) 48, 808, 1164, 1380, 1710
BssAI RCCGGY 2 cut(s) 313, 778
BssECI CCNNGG 4 cut(s) 638, 752, 1630, 1724
BssMI GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
BssNI GRCGYC 2 cut(s) 437, 659
BssT1I CCWWGG 1 cut(s) 1724
Bst2UI CCWGG 2 cut(s) 640, 1632
Bst4CI ACNGT 4 cut(s) 415, 841, 1506, 1530
BstACI GRCGYC 2 cut(s) 437, 659
BstAFI CTTAAG 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 1682
BstC8I GCNNGC 6 cut(s) 459, 463, 657, 882, 948, 1796
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 919, 1324, 1714
BstFNI CGCG 2 cut(s) 126, 872
BstH2I RGCGCY 3 cut(s) 389, 662, 953
BstHHI GCGC 4 cut(s) 39, 388, 661, 952
BstKTI GATC 8 cut(s) 81, 273, 421, 637, 922, 1033, 1138, 1366
BstMAI GTCTC 1 cut(s) 1499
BstMBI GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 281, 737
BstNI CCWGG 2 cut(s) 640, 1632
BstNSI RCATGY 2 cut(s) 211, 1182
BstSCI CCNGG 2 cut(s) 638, 1630
BstSFI CTRYAG 2 cut(s) 414, 1758
BstUI CGCG 2 cut(s) 126, 872
BstV1I GCAGC 4 cut(s) 477, 1300, 1399, 1576
BstX2I RGATCY 3 cut(s) 418, 634, 1030
BstYI RGATCY 3 cut(s) 418, 634, 1030
BsuI GTATCC 2 cut(s) 534, 1245
BsuRI GGCC 2 cut(s) 131, 1700
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 919, 1324, 1714
BtsIMutI CAGTG 3 cut(s) 41, 138, 411
Cac8I GCNNGC 6 cut(s) 459, 463, 657, 882, 948, 1796
CaiI CAGNNNCTG 1 cut(s) 1412
CfoI GCGC 4 cut(s) 39, 388, 661, 952
Cfr10I RCCGGY 2 cut(s) 313, 778
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 1488
CviAII CATG 3 cut(s) 208, 1179, 1465
CviQI GTAC 1 cut(s) 1488
DinI GGCGCC 1 cut(s) 660
DpnI GATC 8 cut(s) 80, 272, 420, 636, 921, 1032, 1137, 1365
DpnII GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
DraI TTTAAA 1 cut(s) 1734
DraIII CACNNNGTG 1 cut(s) 874
EciI GGCGGA 3 cut(s) 56, 110, 148
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 1724
Eco24I GRGCYC 2 cut(s) 66, 240
Eco47I GGWCC 1 cut(s) 349
Eco47III AGCGCT 2 cut(s) 387, 951
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 950
Eco72I CACGTG 1 cut(s) 1682
Eco88I CYCGRG 1 cut(s) 1046
EcoICRI GAGCTC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 1561
EcoRII CCWGG 2 cut(s) 638, 1630
EcoT14I CCWWGG 1 cut(s) 1724
EcoT38I GRGCYC 2 cut(s) 66, 240
EgeI GGCGCC 1 cut(s) 660
EheI GGCGCC 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 1724
FaeI CATG 3 cut(s) 211, 1182, 1468
FaqI GGGAC 1 cut(s) 1613
FatI CATG 3 cut(s) 207, 1178, 1464
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 9 cut(s) 124, 162, 219, 285, 466, 1289, 1410, 1413, 1590
FokI GGATG 3 cut(s) 926, 1331, 1721
FriOI GRGCYC 2 cut(s) 66, 240
Fsp4HI GCNGC 9 cut(s) 124, 162, 219, 285, 466, 1289, 1410, 1413, 1590
FspBI CTAG 4 cut(s) 110, 426, 462, 569
GlaI GCGC 4 cut(s) 38, 387, 660, 951
GluI GCNGC 9 cut(s) 124, 162, 219, 285, 466, 1289, 1410, 1413, 1590
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 3 cut(s) 389, 662, 953
HaeIII GGCC 2 cut(s) 131, 1700
HapII CCGG 5 cut(s) 314, 527, 662, 779, 1139
HgaI GACGC 1 cut(s) 445
HhaI GCGC 4 cut(s) 39, 388, 661, 952
Hin1I GRCGYC 2 cut(s) 437, 659
Hin1II CATG 3 cut(s) 211, 1182, 1468
Hin6I GCGC 4 cut(s) 37, 386, 659, 950
HinP1I GCGC 4 cut(s) 37, 386, 659, 950
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HindIII AAGCTT 2 cut(s) 379, 878
HpaII CCGG 5 cut(s) 314, 527, 662, 779, 1139
HphI GGTGA 7 cut(s) 28, 169, 322, 346, 547, 856, 886
Hpy166II GTNNAC 3 cut(s) 138, 1117, 1450
Hpy188III TCNNGA 8 cut(s) 402, 478, 527, 569, 892, 899, 1139, 1349
Hpy8I GTNNAC 3 cut(s) 138, 1117, 1450
Hpy99I CGWCG 2 cut(s) 233, 236
HpyAV CCTTC 3 cut(s) 232, 481, 1706
HpyCH4III ACNGT 4 cut(s) 415, 841, 1506, 1530
HpyCH4IV ACGT 2 cut(s) 228, 1681
HpyCH4V TGCA 7 cut(s) 731, 831, 946, 1057, 1149, 1804, 1810
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 737
HpySE526I ACGT 2 cut(s) 228, 1681
Hsp92I GRCGYC 2 cut(s) 437, 659
Hsp92II CATG 3 cut(s) 211, 1182, 1468
HspAI GCGC 4 cut(s) 37, 386, 659, 950
KasI GGCGCC 1 cut(s) 658
Kpn2I TCCGGA 2 cut(s) 526, 1138
Kzo9I GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
LmnI GCTCC 5 cut(s) 69, 243, 345, 745, 1693
Lsp1109I GCAGC 4 cut(s) 477, 1300, 1399, 1576
LweI GCATC 6 cut(s) 1066, 1675, 1685, 1807, 1813, 1819
MaeI CTAG 4 cut(s) 110, 426, 462, 569
MaeII ACGT 2 cut(s) 228, 1681
MalI GATC 8 cut(s) 80, 272, 420, 636, 921, 1032, 1137, 1365
MboI GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
MboII GAAGA 4 cut(s) 280, 641, 733, 1286
MfeI CAATTG 1 cut(s) 697
MflI RGATCY 3 cut(s) 418, 634, 1030
MhlI GDGCHC 3 cut(s) 66, 240, 321
MluCI AATT 7 cut(s) 405, 697, 1098, 1150, 1278, 1561, 1613
Mly113I GGCGCC 1 cut(s) 659
MlyI GAGTC 4 cut(s) 95, 299, 1058, 1350
MmeI TCCRAC 1 cut(s) 969
MroI TCCGGA 2 cut(s) 526, 1138
MseI TTAA 8 cut(s) 549, 711, 1011, 1041, 1128, 1508, 1547, 1733
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 3 cut(s) 76, 655, 1412
MspCI CTTAAG 1 cut(s) 1127
MspI CCGG 5 cut(s) 314, 527, 662, 779, 1139
MspR9I CCNGG 2 cut(s) 640, 1632
MunI CAATTG 1 cut(s) 697
Mva1269I GAATGC 2 cut(s) 398, 1591
MvaI CCWGG 2 cut(s) 640, 1632
MvnI CGCG 2 cut(s) 126, 872
MwoI GCNNNNNNNGC 2 cut(s) 281, 737
NarI GGCGCC 1 cut(s) 659
NdeII GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 3 cut(s) 211, 1182, 1468
NlaIV GGNNCC 6 cut(s) 65, 660, 741, 1032, 1165, 1620
NmeAIII GCCGAG 1 cut(s) 777
NspI RCATGY 2 cut(s) 211, 1182
OliI CACNNNNGTG 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 1046
PciI ACATGT 2 cut(s) 207, 1178
PcsI WCGNNNNNNNCGW 1 cut(s) 1345
PctI GAATGC 2 cut(s) 398, 1591
PfeI GAWTC 7 cut(s) 530, 565, 581, 686, 895, 925, 1716
PkrI GCNGC 9 cut(s) 125, 163, 220, 286, 467, 1290, 1411, 1414, 1591
PleI GAGTC 4 cut(s) 94, 299, 1057, 1349
PluTI GGCGCC 1 cut(s) 662
PmaCI CACGTG 1 cut(s) 1682
PmlI CACGTG 1 cut(s) 1682
PpsI GAGTC 4 cut(s) 94, 299, 1057, 1349
Ppu21I YACGTR 1 cut(s) 1682
PpuMI RGGWCCY 1 cut(s) 349
PscI ACATGT 2 cut(s) 207, 1178
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 638, 1630
PspCI CACGTG 1 cut(s) 1682
PspGI CCWGG 2 cut(s) 638, 1630
PspN4I GGNNCC 6 cut(s) 65, 660, 741, 1032, 1165, 1620
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
PspXI VCTCGAGB 1 cut(s) 1046
PstNI CAGNNNCTG 1 cut(s) 1412
PsuI RGATCY 3 cut(s) 418, 634, 1030
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 1489
RsaNI GTAC 1 cut(s) 1488
RseI CAYNNNNRTG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 8 cut(s) 549, 711, 1011, 1041, 1128, 1508, 1547, 1733
SatI GCNGC 9 cut(s) 124, 162, 219, 285, 466, 1289, 1410, 1413, 1590
Sau3AI GATC 8 cut(s) 78, 270, 418, 634, 919, 1030, 1135, 1363
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 4 cut(s) 95, 299, 1058, 1350
ScrFI CCNGG 2 cut(s) 640, 1632
SduI GDGCHC 3 cut(s) 66, 240, 321
SfaNI GCATC 6 cut(s) 1066, 1675, 1685, 1807, 1813, 1819
SfcI CTRYAG 2 cut(s) 414, 1758
SfoI GGCGCC 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 1046
SgrAI CRCCGGYG 1 cut(s) 313
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 1046
SmiI ATTTAAAT 1 cut(s) 1734
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 3 cut(s) 170, 1046, 1127
SmoI CTYRAG 3 cut(s) 170, 1046, 1127
Sse9I AATT 7 cut(s) 405, 697, 1098, 1150, 1278, 1561, 1613
SspDI GGCGCC 1 cut(s) 658
SspI AATATT 1 cut(s) 1039
SspMI CTAG 4 cut(s) 110, 426, 462, 569
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 638, 1630
StyI CCWWGG 1 cut(s) 1724
SwaI ATTTAAAT 1 cut(s) 1734
TaaI ACNGT 4 cut(s) 415, 841, 1506, 1530
TaiI ACGT 2 cut(s) 231, 1684
TaqI TCGA 5 cut(s) 234, 372, 1047, 1175, 1339
TasI AATT 7 cut(s) 405, 697, 1098, 1150, 1278, 1561, 1613
TauI GCSGC 5 cut(s) 126, 164, 221, 287, 1412
TfiI GAWTC 7 cut(s) 530, 565, 581, 686, 895, 925, 1716
Tru1I TTAA 8 cut(s) 549, 711, 1011, 1041, 1128, 1508, 1547, 1733
Tru9I TTAA 8 cut(s) 549, 711, 1011, 1041, 1128, 1508, 1547, 1733
TscAI CASTG 3 cut(s) 48, 145, 418
TseI GCWGC 4 cut(s) 465, 1288, 1412, 1589
TspDTI ATGAA 3 cut(s) 879, 1725, 1808
TspRI CASTG 3 cut(s) 48, 145, 418
Vha464I CTTAAG 1 cut(s) 1127
VpaK11BI GGWCC 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 2 cut(s) 1098, 1561
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 2 cut(s) 211, 1182
XcmI CCANNNNNNNNNTGG 2 cut(s) 418, 975
XhoI CTCGAG 1 cut(s) 1046
XspI CTAG 4 cut(s) 110, 426, 462, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.