Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48760 AT1G48760 AT1G48760 |
| fragaria_vesca | FvH4_5g11850 |
| malus_domestica | MD06G1218100.v1.1 MD14G1228200.v1.1 |
| prunus_persica | Prupe.5G223200_v2.0.a1 |
| pyrus_communis | pycom06g19420 pycom14g18960 |
| rosa_chinensis | RchiOBHm_Chr7g0185741 |
| rosa_laevigata | RLG00000004886 |
| rosa_multiflora | Rmu_sc0002121.1_g000007 Rmu_sc0002952.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00268650 |
| rosa_rugosa | Rorug06G0471100 |
| rosa_samantha | Rh7AG071300 Rh7BG076600 Rh7CG076600 Rh7DG076400 |
| rosa_wichuraiana | Rw7G006380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2374 |
| Acc36I | ACCTGC | 1 cut(s) | 2374 |
| AccB1I | GGYRCC | 2 cut(s) | 658, 1618 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 79 |
| AccII | CGCG | 2 cut(s) | 126, 872 |
| AccIII | TCCGGA | 2 cut(s) | 526, 1138 |
| AclI | AACGTT | 1 cut(s) | 2637 |
| AclWI | GGATC | 6 cut(s) | 629, 914, 1025, 1038, 1130, 1358 |
| AcoI | YGGCCR | 1 cut(s) | 459 |
| AcsI | RAATTY | 4 cut(s) | 1098, 1561, 2188, 2665 |
| AcuI | CTGAAG | 2 cut(s) | 950, 2322 |
| AcvI | CACGTG | 1 cut(s) | 1682 |
| AcyI | GRCGYC | 2 cut(s) | 437, 659 |
| AdeI | CACNNNGTG | 1 cut(s) | 874 |
| AfaI | GTAC | 6 cut(s) | 1489, 1941, 2112, 2508, 2554, 2707 |
| AfeI | AGCGCT | 3 cut(s) | 387, 951, 2092 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 58, 79, 127, 1416, 2598 |
| AflII | CTTAAG | 1 cut(s) | 1127 |
| AflIII | ACRYGT | 2 cut(s) | 207, 1178 |
| AjiI | CACGTC | 1 cut(s) | 229 |
| AjnI | CCWGG | 2 cut(s) | 1630, 2266 |
| AleI | CACNNNNGTG | 1 cut(s) | 314 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 14, 46 |
| Alw21I | GWGCWC | 4 cut(s) | 240, 321, 1933, 2006 |
| Alw26I | GTCTC | 4 cut(s) | 566, 1499, 2576, 2766 |
| AlwI | GGATC | 6 cut(s) | 629, 914, 1025, 1038, 1130, 1358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1412 |
| Ama87I | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| Aor13HI | TCCGGA | 2 cut(s) | 526, 1138 |
| Aor51HI | AGCGCT | 3 cut(s) | 387, 951, 2092 |
| AoxI | GGCC | 6 cut(s) | 129, 459, 963, 1698, 2270, 2474 |
| ApeKI | GCWGC | 6 cut(s) | 465, 1288, 1412, 1589, 2314, 2516 |
| ApoI | RAATTY | 4 cut(s) | 1098, 1561, 2188, 2665 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 197, 229 |
| AspA2I | CCTAGG | 1 cut(s) | 2471 |
| AspLEI | GCGC | 6 cut(s) | 39, 388, 661, 952, 2093, 2851 |
| AspS9I | GGNCC | 5 cut(s) | 349, 964, 2075, 2270, 2522 |
| AsuC2I | CCSGG | 2 cut(s) | 2759, 2760 |
| AvaI | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| AvaII | GGWCC | 3 cut(s) | 349, 2075, 2522 |
| AvrII | CCTAGG | 1 cut(s) | 2471 |
| BalI | TGGCCA | 1 cut(s) | 461 |
| BamHI | GGATCC | 1 cut(s) | 1030 |
| BanI | GGYRCC | 2 cut(s) | 658, 1618 |
| BanII | GRGCYC | 3 cut(s) | 66, 240, 2006 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 260, 292, 1461, 1493 |
| BbrPI | CACGTG | 1 cut(s) | 1682 |
| Bbv12I | GWGCWC | 4 cut(s) | 240, 321, 1933, 2006 |
| BbvCI | CCTCAGC | 1 cut(s) | 1577 |
| BbvI | GCAGC | 6 cut(s) | 477, 1300, 1399, 1576, 2326, 2528 |
| BccI | CCATC | 6 cut(s) | 13, 73, 2111, 2281, 2345, 2489 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 457, 491, 2813, 2847 |
| BciT130I | CCWGG | 2 cut(s) | 1632, 2268 |
| BciVI | GTATCC | 2 cut(s) | 534, 1245 |
| BcnI | CCSGG | 2 cut(s) | 2759, 2760 |
| BcoDI | GTCTC | 4 cut(s) | 566, 1499, 2576, 2766 |
| BfaI | CTAG | 8 cut(s) | 110, 426, 569, 1985, 2472, 2573, 2598, 2703 |
| BfmI | CTRYAG | 2 cut(s) | 414, 1758 |
| BfoI | RGCGCY | 4 cut(s) | 389, 662, 953, 2094 |
| BfrI | CTTAAG | 1 cut(s) | 1127 |
| BfuAI | ACCTGC | 1 cut(s) | 2374 |
| BfuI | GTATCC | 2 cut(s) | 534, 1245 |
| BglII | AGATCT | 2 cut(s) | 418, 2410 |
| BlnI | CCTAGG | 1 cut(s) | 2471 |
| BlpI | GCTNAGC | 1 cut(s) | 382 |
| Bme1390I | CCNGG | 4 cut(s) | 1632, 2268, 2759, 2760 |
| Bme18I | GGWCC | 3 cut(s) | 349, 2075, 2522 |
| BmeT110I | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| BmgBI | CACGTC | 1 cut(s) | 229 |
| BmgT120I | GGNCC | 5 cut(s) | 349, 964, 2075, 2270, 2522 |
| BmiI | GGNNCC | 9 cut(s) | 65, 660, 741, 966, 1032, 1165, 1620, 1890, 2076 |
| BmrFI | CCNGG | 4 cut(s) | 1632, 2268, 2759, 2760 |
| BmrI | ACTGGG | 2 cut(s) | 813, 1169 |
| BmuI | ACTGGG | 2 cut(s) | 813, 1169 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 227, 259, 1988, 2020 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1577, 2094 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 382 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 2162 |
| BpuMI | CCSGG | 2 cut(s) | 2759, 2760 |
| BsaAI | YACGTR | 1 cut(s) | 1682 |
| BsaBI | GATNNNNATC | 7 cut(s) | 522, 918, 924, 1029, 1734, 2409, 2499 |
| BsaHI | GRCGYC | 2 cut(s) | 437, 659 |
| BsaJI | CCNNGG | 9 cut(s) | 752, 1630, 1724, 2200, 2267, 2471, 2658, 2758, 2759 |
| BsaWI | WCCGGW | 2 cut(s) | 526, 1138 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 173, 203, 272, 302, 2490, 2520 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 58, 79, 127, 1416, 2598 |
| Bse118I | RCCGGY | 2 cut(s) | 313, 778 |
| Bse1I | ACTGG | 5 cut(s) | 48, 808, 1164, 1710, 2876 |
| Bse3DI | GCAATG | 3 cut(s) | 452, 1077, 1258 |
| Bse8I | GATNNNNATC | 7 cut(s) | 522, 918, 924, 1029, 1734, 2409, 2499 |
| BseAI | TCCGGA | 2 cut(s) | 526, 1138 |
| BseBI | CCWGG | 2 cut(s) | 1632, 2268 |
| BseDI | CCNNGG | 9 cut(s) | 752, 1630, 1724, 2200, 2267, 2471, 2658, 2758, 2759 |
| BseGI | GGATG | 7 cut(s) | 919, 1324, 1591, 1714, 2027, 2356, 2569 |
| BseJI | GATNNNNATC | 7 cut(s) | 522, 918, 924, 1029, 1734, 2409, 2499 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 58, 79, 127, 1416, 2598 |
| BseMI | GCAATG | 3 cut(s) | 452, 1077, 1258 |
| BseMII | CTCAG | 9 cut(s) | 432, 497, 620, 1071, 1568, 2019, 2097, 2108, 2393 |
| BseNI | ACTGG | 5 cut(s) | 48, 808, 1164, 1710, 2876 |
| BseRI | GAGGAG | 5 cut(s) | 178, 230, 235, 1588, 2012 |
| BseXI | GCAGC | 6 cut(s) | 477, 1300, 1399, 1576, 2326, 2528 |
| Bsh1236I | CGCG | 2 cut(s) | 126, 872 |
| BshFI | GGCC | 6 cut(s) | 131, 461, 965, 1700, 2272, 2476 |
| BshNI | GGYRCC | 2 cut(s) | 658, 1618 |
| BsiHKAI | GWGCWC | 4 cut(s) | 240, 321, 1933, 2006 |
| BsiHKCI | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| BsiSI | CCGG | 5 cut(s) | 314, 527, 779, 1139, 2759 |
| BslFI | GGGAC | 1 cut(s) | 1613 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 58, 79, 127, 1416, 2598 |
| BsmAI | GTCTC | 4 cut(s) | 566, 1499, 2576, 2766 |
| BsmBI | CGTCTC | 1 cut(s) | 2766 |
| BsmFI | GGGAC | 1 cut(s) | 1613 |
| BsmI | GAATGC | 1 cut(s) | 398 |
| BsnI | GGCC | 6 cut(s) | 131, 461, 965, 1700, 2272, 2476 |
| BsoBI | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| Bsp1286I | GDGCHC | 5 cut(s) | 66, 240, 321, 1933, 2006 |
| Bsp13I | TCCGGA | 2 cut(s) | 526, 1138 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 382 |
| Bsp19I | CCATGG | 1 cut(s) | 2200 |
| BspANI | GGCC | 6 cut(s) | 131, 461, 965, 1700, 2272, 2476 |
| BspCNI | CTCAG | 9 cut(s) | 433, 498, 621, 1072, 1569, 2018, 2096, 2107, 2392 |
| BspEI | TCCGGA | 2 cut(s) | 526, 1138 |
| BspFNI | CGCG | 2 cut(s) | 126, 872 |
| BspLI | GGNNCC | 9 cut(s) | 65, 660, 741, 966, 1032, 1165, 1620, 1890, 2076 |
| BspMI | ACCTGC | 1 cut(s) | 2374 |
| BspPI | GGATC | 6 cut(s) | 629, 914, 1025, 1038, 1130, 1358 |
| BspQI | GCTCTTC | 1 cut(s) | 2256 |
| BspT107I | GGYRCC | 2 cut(s) | 658, 1618 |
| BspTI | CTTAAG | 1 cut(s) | 1127 |
| BsrDI | GCAATG | 3 cut(s) | 452, 1077, 1258 |
| BsrFI | RCCGGY | 2 cut(s) | 313, 778 |
| BsrI | ACTGG | 5 cut(s) | 48, 808, 1164, 1710, 2876 |
| BssAI | RCCGGY | 2 cut(s) | 313, 778 |
| BssECI | CCNNGG | 9 cut(s) | 752, 1630, 1724, 2200, 2267, 2471, 2658, 2758, 2759 |
| BssNI | GRCGYC | 2 cut(s) | 437, 659 |
| BssT1I | CCWWGG | 4 cut(s) | 1724, 2200, 2471, 2658 |
| Bst2UI | CCWGG | 2 cut(s) | 1632, 2268 |
| Bst4CI | ACNGT | 8 cut(s) | 415, 841, 1506, 1530, 1835, 2309, 2557, 2792 |
| Bst6I | CTCTTC | 1 cut(s) | 2256 |
| BstACI | GRCGYC | 2 cut(s) | 437, 659 |
| BstAFI | CTTAAG | 1 cut(s) | 1127 |
| BstBAI | YACGTR | 1 cut(s) | 1682 |
| BstDSI | CCRYGG | 1 cut(s) | 2200 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 56 |
| BstF5I | GGATG | 7 cut(s) | 919, 1324, 1591, 1714, 2027, 2356, 2569 |
| BstFNI | CGCG | 2 cut(s) | 126, 872 |
| BstH2I | RGCGCY | 4 cut(s) | 389, 662, 953, 2094 |
| BstHHI | GCGC | 6 cut(s) | 39, 388, 661, 952, 2093, 2851 |
| BstMAI | GTCTC | 4 cut(s) | 566, 1499, 2576, 2766 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 281, 737, 1811, 1972, 2428 |
| BstNI | CCWGG | 2 cut(s) | 1632, 2268 |
| BstNSI | RCATGY | 2 cut(s) | 211, 1182 |
| BstSCI | CCNGG | 4 cut(s) | 1630, 2266, 2757, 2758 |
| BstSFI | CTRYAG | 2 cut(s) | 414, 1758 |
| BstUI | CGCG | 2 cut(s) | 126, 872 |
| BstV1I | GCAGC | 6 cut(s) | 477, 1300, 1399, 1576, 2326, 2528 |
| BstX2I | RGATCY | 4 cut(s) | 418, 634, 1030, 2410 |
| BstYI | RGATCY | 4 cut(s) | 418, 634, 1030, 2410 |
| BsuI | GTATCC | 2 cut(s) | 534, 1245 |
| BsuRI | GGCC | 6 cut(s) | 131, 461, 965, 1700, 2272, 2476 |
| BtgI | CCRYGG | 1 cut(s) | 2200 |
| BtrI | CACGTC | 1 cut(s) | 229 |
| BtsCI | GGATG | 7 cut(s) | 919, 1324, 1591, 1714, 2027, 2356, 2569 |
| BtsIMutI | CAGTG | 3 cut(s) | 41, 411, 2562 |
| BveI | ACCTGC | 1 cut(s) | 2374 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1412 |
| CfoI | GCGC | 6 cut(s) | 39, 388, 661, 952, 2093, 2851 |
| Cfr10I | RCCGGY | 2 cut(s) | 313, 778 |
| Cfr13I | GGNCC | 5 cut(s) | 349, 964, 2075, 2270, 2522 |
| Cfr9I | CCCGGG | 1 cut(s) | 2758 |
| CseI | GACGC | 2 cut(s) | 445, 1046 |
| Csp6I | GTAC | 6 cut(s) | 1488, 1940, 2111, 2507, 2553, 2706 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 480, 515 |
| CviAII | CATG | 8 cut(s) | 208, 1179, 1465, 1844, 2051, 2201, 2318, 2462 |
| CviQI | GTAC | 6 cut(s) | 1488, 1940, 2111, 2507, 2553, 2706 |
| DinI | GGCGCC | 1 cut(s) | 660 |
| DraI | TTTAAA | 2 cut(s) | 1734, 1866 |
| DraIII | CACNNNGTG | 1 cut(s) | 874 |
| EaeI | YGGCCR | 1 cut(s) | 459 |
| Eam1104I | CTCTTC | 1 cut(s) | 2256 |
| EarI | CTCTTC | 1 cut(s) | 2256 |
| EciI | GGCGGA | 3 cut(s) | 56, 110, 148 |
| Ecl136II | GAGCTC | 2 cut(s) | 238, 2004 |
| Eco130I | CCWWGG | 4 cut(s) | 1724, 2200, 2471, 2658 |
| Eco147I | AGGCCT | 1 cut(s) | 2476 |
| Eco24I | GRGCYC | 3 cut(s) | 66, 240, 2006 |
| Eco47I | GGWCC | 3 cut(s) | 349, 2075, 2522 |
| Eco47III | AGCGCT | 3 cut(s) | 387, 951, 2092 |
| Eco53kI | GAGCTC | 2 cut(s) | 238, 2004 |
| Eco57I | CTGAAG | 2 cut(s) | 950, 2322 |
| Eco72I | CACGTG | 1 cut(s) | 1682 |
| Eco88I | CYCGRG | 3 cut(s) | 662, 1046, 2758 |
| EcoICRI | GAGCTC | 2 cut(s) | 238, 2004 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 56 |
| EcoO109I | RGGNCCY | 2 cut(s) | 349, 2075 |
| EcoRI | GAATTC | 1 cut(s) | 1561 |
| EcoRII | CCWGG | 2 cut(s) | 1630, 2266 |
| EcoT14I | CCWWGG | 4 cut(s) | 1724, 2200, 2471, 2658 |
| EcoT22I | ATGCAT | 1 cut(s) | 2052 |
| EcoT38I | GRGCYC | 3 cut(s) | 66, 240, 2006 |
| EgeI | GGCGCC | 1 cut(s) | 660 |
| EheI | GGCGCC | 1 cut(s) | 660 |
| ErhI | CCWWGG | 4 cut(s) | 1724, 2200, 2471, 2658 |
| Esp3I | CGTCTC | 1 cut(s) | 2766 |
| FaeI | CATG | 8 cut(s) | 211, 1182, 1468, 1847, 2054, 2204, 2321, 2465 |
| FaqI | GGGAC | 1 cut(s) | 1613 |
| FatI | CATG | 8 cut(s) | 207, 1178, 1464, 1843, 2050, 2200, 2317, 2461 |
| FauI | CCCGC | 2 cut(s) | 260, 2553 |
| FokI | GGATG | 7 cut(s) | 926, 1331, 1598, 1721, 2014, 2363, 2576 |
| FriOI | GRGCYC | 3 cut(s) | 66, 240, 2006 |
| FspBI | CTAG | 8 cut(s) | 110, 426, 569, 1985, 2472, 2573, 2598, 2703 |
| GlaI | GCGC | 6 cut(s) | 38, 387, 660, 951, 2092, 2850 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 4 cut(s) | 389, 662, 953, 2094 |
| HaeIII | GGCC | 6 cut(s) | 131, 461, 965, 1700, 2272, 2476 |
| HapII | CCGG | 5 cut(s) | 314, 527, 779, 1139, 2759 |
| HgaI | GACGC | 2 cut(s) | 445, 1046 |
| HhaI | GCGC | 6 cut(s) | 39, 388, 661, 952, 2093, 2851 |
| Hin1I | GRCGYC | 2 cut(s) | 437, 659 |
| Hin1II | CATG | 8 cut(s) | 211, 1182, 1468, 1847, 2054, 2204, 2321, 2465 |
| Hin6I | GCGC | 6 cut(s) | 37, 386, 659, 950, 2091, 2849 |
| HinP1I | GCGC | 6 cut(s) | 37, 386, 659, 950, 2091, 2849 |
| HincII | GTYRAC | 1 cut(s) | 1117 |
| HindII | GTYRAC | 1 cut(s) | 1117 |
| HindIII | AAGCTT | 3 cut(s) | 379, 878, 2420 |
| HpaII | CCGG | 5 cut(s) | 314, 527, 779, 1139, 2759 |
| Hpy166II | GTNNAC | 4 cut(s) | 138, 1117, 1450, 2525 |
| Hpy8I | GTNNAC | 4 cut(s) | 138, 1117, 1450, 2525 |
| Hpy99I | CGWCG | 3 cut(s) | 233, 236, 305 |
| HpyCH4III | ACNGT | 8 cut(s) | 415, 841, 1506, 1530, 1835, 2309, 2557, 2792 |
| HpyCH4IV | ACGT | 3 cut(s) | 228, 1681, 2637 |
| HpyCH4V | TGCA | 8 cut(s) | 731, 831, 946, 1149, 2050, 2300, 2465, 2516 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 281, 737, 1811, 1972, 2428 |
| HpySE526I | ACGT | 3 cut(s) | 228, 1681, 2637 |
| Hsp92I | GRCGYC | 2 cut(s) | 437, 659 |
| Hsp92II | CATG | 8 cut(s) | 211, 1182, 1468, 1847, 2054, 2204, 2321, 2465 |
| HspAI | GCGC | 6 cut(s) | 37, 386, 659, 950, 2091, 2849 |
| KasI | GGCGCC | 1 cut(s) | 658 |
| Kpn2I | TCCGGA | 2 cut(s) | 526, 1138 |
| LguI | GCTCTTC | 1 cut(s) | 2256 |
| LmnI | GCTCC | 5 cut(s) | 69, 243, 345, 745, 1693 |
| Lsp1109I | GCAGC | 6 cut(s) | 477, 1300, 1399, 1576, 2326, 2528 |
| MaeI | CTAG | 8 cut(s) | 110, 426, 569, 1985, 2472, 2573, 2598, 2703 |
| MaeII | ACGT | 3 cut(s) | 228, 1681, 2637 |
| MaeIII | GTNAC | 2 cut(s) | 2382, 2433 |
| MfeI | CAATTG | 2 cut(s) | 492, 697 |
| MflI | RGATCY | 4 cut(s) | 418, 634, 1030, 2410 |
| MhlI | GDGCHC | 5 cut(s) | 66, 240, 321, 1933, 2006 |
| MlsI | TGGCCA | 1 cut(s) | 461 |
| MluNI | TGGCCA | 1 cut(s) | 461 |
| Mly113I | GGCGCC | 1 cut(s) | 659 |
| MlyI | GAGTC | 4 cut(s) | 95, 299, 1058, 1350 |
| MmeI | TCCRAC | 1 cut(s) | 969 |
| Mox20I | TGGCCA | 1 cut(s) | 461 |
| Mph1103I | ATGCAT | 1 cut(s) | 2052 |
| MroI | TCCGGA | 2 cut(s) | 526, 1138 |
| MscI | TGGCCA | 1 cut(s) | 461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| Msp20I | TGGCCA | 1 cut(s) | 461 |
| MspA1I | CMGCKG | 4 cut(s) | 76, 655, 1412, 2519 |
| MspCI | CTTAAG | 1 cut(s) | 1127 |
| MspI | CCGG | 5 cut(s) | 314, 527, 779, 1139, 2759 |
| MspR9I | CCNGG | 4 cut(s) | 1632, 2268, 2759, 2760 |
| MunI | CAATTG | 2 cut(s) | 492, 697 |
| Mva1269I | GAATGC | 1 cut(s) | 398 |
| MvaI | CCWGG | 2 cut(s) | 1632, 2268 |
| MvnI | CGCG | 2 cut(s) | 126, 872 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 281, 737, 1811, 1972, 2428 |
| NarI | GGCGCC | 1 cut(s) | 659 |
| NciI | CCSGG | 2 cut(s) | 2759, 2760 |
| NcoI | CCATGG | 1 cut(s) | 2200 |
| NlaIII | CATG | 8 cut(s) | 211, 1182, 1468, 1847, 2054, 2204, 2321, 2465 |
| NlaIV | GGNNCC | 9 cut(s) | 65, 660, 741, 966, 1032, 1165, 1620, 1890, 2076 |
| NmeAIII | GCCGAG | 2 cut(s) | 777, 2812 |
| NsiI | ATGCAT | 1 cut(s) | 2052 |
| NspI | RCATGY | 2 cut(s) | 211, 1182 |
| OliI | CACNNNNGTG | 1 cut(s) | 314 |
| PaeR7I | CTCGAG | 1 cut(s) | 1046 |
| PaqCI | CACCTGC | 1 cut(s) | 2374 |
| PceI | AGGCCT | 1 cut(s) | 2476 |
| PciI | ACATGT | 2 cut(s) | 207, 1178 |
| PciSI | GCTCTTC | 1 cut(s) | 2256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1345 |
| PctI | GAATGC | 1 cut(s) | 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 79 |
| PleI | GAGTC | 4 cut(s) | 94, 299, 1057, 1349 |
| PluTI | GGCGCC | 1 cut(s) | 662 |
| PmaCI | CACGTG | 1 cut(s) | 1682 |
| PmlI | CACGTG | 1 cut(s) | 1682 |
| PpsI | GAGTC | 4 cut(s) | 94, 299, 1057, 1349 |
| Ppu21I | YACGTR | 1 cut(s) | 1682 |
| PpuMI | RGGWCCY | 2 cut(s) | 349, 2075 |
| PscI | ACATGT | 2 cut(s) | 207, 1178 |
| Psp124BI | GAGCTC | 2 cut(s) | 240, 2006 |
| Psp1406I | AACGTT | 1 cut(s) | 2637 |
| Psp5II | RGGWCCY | 2 cut(s) | 349, 2075 |
| Psp6I | CCWGG | 2 cut(s) | 1630, 2266 |
| PspCI | CACGTG | 1 cut(s) | 1682 |
| PspGI | CCWGG | 2 cut(s) | 1630, 2266 |
| PspN4I | GGNNCC | 9 cut(s) | 65, 660, 741, 966, 1032, 1165, 1620, 1890, 2076 |
| PspPI | GGNCC | 5 cut(s) | 349, 964, 2075, 2270, 2522 |
| PspPPI | RGGWCCY | 2 cut(s) | 349, 2075 |
| PspXI | VCTCGAGB | 1 cut(s) | 1046 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1412 |
| PsuI | RGATCY | 4 cut(s) | 418, 634, 1030, 2410 |
| PvuII | CAGCTG | 2 cut(s) | 76, 2519 |
| RsaI | GTAC | 6 cut(s) | 1489, 1941, 2112, 2508, 2554, 2707 |
| RsaNI | GTAC | 6 cut(s) | 1488, 1940, 2111, 2507, 2553, 2706 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SacI | GAGCTC | 2 cut(s) | 240, 2006 |
| SapI | GCTCTTC | 1 cut(s) | 2256 |
| Sau96I | GGNCC | 5 cut(s) | 349, 964, 2075, 2270, 2522 |
| SchI | GAGTC | 4 cut(s) | 95, 299, 1058, 1350 |
| ScrFI | CCNGG | 4 cut(s) | 1632, 2268, 2759, 2760 |
| SduI | GDGCHC | 5 cut(s) | 66, 240, 321, 1933, 2006 |
| SfcI | CTRYAG | 2 cut(s) | 414, 1758 |
| SfoI | GGCGCC | 1 cut(s) | 660 |
| Sfr274I | CTCGAG | 1 cut(s) | 1046 |
| SgrAI | CRCCGGYG | 1 cut(s) | 313 |
| SinI | GGWCC | 3 cut(s) | 349, 2075, 2522 |
| SlaI | CTCGAG | 1 cut(s) | 1046 |
| SmaI | CCCGGG | 1 cut(s) | 2760 |
| SmiI | ATTTAAAT | 1 cut(s) | 1734 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 4 cut(s) | 170, 1046, 1127, 2141 |
| SmoI | CTYRAG | 4 cut(s) | 170, 1046, 1127, 2141 |
| SseBI | AGGCCT | 1 cut(s) | 2476 |
| SspDI | GGCGCC | 1 cut(s) | 658 |
| SspI | AATATT | 1 cut(s) | 1039 |
| SspMI | CTAG | 8 cut(s) | 110, 426, 569, 1985, 2472, 2573, 2598, 2703 |
| SstI | GAGCTC | 2 cut(s) | 240, 2006 |
| StuI | AGGCCT | 1 cut(s) | 2476 |
| StyD4I | CCNGG | 4 cut(s) | 1630, 2266, 2757, 2758 |
| StyI | CCWWGG | 4 cut(s) | 1724, 2200, 2471, 2658 |
| SwaI | ATTTAAAT | 1 cut(s) | 1734 |
| TaaI | ACNGT | 8 cut(s) | 415, 841, 1506, 1530, 1835, 2309, 2557, 2792 |
| TaiI | ACGT | 3 cut(s) | 231, 1684, 2640 |
| TaqI | TCGA | 7 cut(s) | 101, 234, 300, 372, 1047, 1175, 1339 |
| TatI | WGTACW | 1 cut(s) | 1939 |
| TauI | GCSGC | 5 cut(s) | 126, 164, 221, 287, 1412 |
| TscAI | CASTG | 3 cut(s) | 48, 418, 2562 |
| TseI | GCWGC | 6 cut(s) | 465, 1288, 1412, 1589, 2314, 2516 |
| TspDTI | ATGAA | 9 cut(s) | 879, 1725, 1812, 1860, 1939, 2172, 2181, 2295, 2421 |
| TspGWI | ACGGA | 2 cut(s) | 2027, 2098 |
| TspMI | CCCGGG | 1 cut(s) | 2758 |
| TspRI | CASTG | 3 cut(s) | 48, 418, 2562 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 79 |
| Vha464I | CTTAAG | 1 cut(s) | 1127 |
| VpaK11BI | GGWCC | 3 cut(s) | 349, 2075, 2522 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 56 |
| XapI | RAATTY | 4 cut(s) | 1098, 1561, 2188, 2665 |
| XbaI | TCTAGA | 1 cut(s) | 568 |
| XceI | RCATGY | 2 cut(s) | 211, 1182 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2665 |
| XhoI | CTCGAG | 1 cut(s) | 1046 |
| XmaI | CCCGGG | 1 cut(s) | 2758 |
| XmaJI | CCTAGG | 1 cut(s) | 2471 |
| XspI | CTAG | 8 cut(s) | 110, 426, 569, 1985, 2472, 2573, 2598, 2703 |
| Zsp2I | ATGCAT | 1 cut(s) | 2052 |