AT1G49010
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014455
Physical Location & Seq
Forward (+)
18132545 .. 18134017
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49010.1

Sequence Viewer

Length: 945 bp
ATGGAGAGTGTGGTGGCAACATGGAGCAGAGAAGAAGAGAAAGCATTCGAGAACGCAATTGCGTTGCATTGTGTAGAGGAAGAGATAACAGAGGATCAATGGAACAAAATGTCGTCAATGGTACCAAGCAAAGCCTTAGAAGAAGTAAAGAAACATTACCAAATCCTTTTAGAAGATGTCAAAGCAATCGAGAATGGTCAAGTTCCTTTACCTCGTTATCATCACCGCAAAGGTCTCATCGTAGATGAAGCAGCAGCAGCAGCTACTTCTCCTGCCAACAGAGACTCTCATTCCTCTGGATCATCTGAGAAGAAACCAAATCCTGGCACCTCCGGGATAAGTAGCTCCAATGGAGGAAGAAGTGGTGGCTCGAGAGCTGAGCAAGAGAGAAGAAAAGGGATTCCATGGACTGAAGAAGAGCATCGGTTGTTTCTTTTGGGTTTGGACAAGTTTGGGAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATCTCAAGAACTCCAACACAAGTTGCAAGTCATGCTCAAAAATACTTCATCAGGCTTAACTCGATGAACCGAGATAGAAGGCGGTCTAGCATTCACGACATCACCACTGTGAACAATCAAGCTCCTGCGGTTACAGGAGGAGGACAACAACCGCAAGTGGTTAAACATAGACCAGCTCAGCCACAACCACAGCCACAACCGCAACCACAACAACATCATCCCCCAACAATGGCTGGATTAGGGATGTATGGTGGTGCGCCAGTGGGACAACCGATCATCGCACCACCTGATCATATGGGTTCAGCTGTTGGAACACCTGTGATGCTTCCACCTCCAATGGGAACTCATCATCATCACCATCACCATCATCTTGGAGTTGCTCCTTATGCTGTACCGGCTTATCCGGTACCGCCATTACCGCAGCAACATCCAGCTCCGTCGACAATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

314

Amino Acids

34.47

Weight (kDa)

8.93

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 135 - 180 2.7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 121, 898
AccB1I GGYRCC 3 cut(s) 121, 326, 898
AccB7I CCANNNNNTGG 1 cut(s) 323
AccI GTMKAC 1 cut(s) 932
AciI CCGC 7 cut(s) 226, 574, 620, 644, 692, 902, 911
AclWI GGATC 2 cut(s) 102, 307
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 3 cut(s) 123, 885, 900
AfiI CCNNNNNNNGG 3 cut(s) 323, 721, 830
AgsI TTSAA 1 cut(s) 480
AjnI CCWGG 1 cut(s) 322
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 7 cut(s) 263, 345, 377, 614, 668, 797, 926
AluI AGCT 7 cut(s) 263, 345, 377, 614, 668, 797, 926
Alw26I GTCTC 2 cut(s) 239, 276
AlwI GGATC 2 cut(s) 102, 307
Ama87I CYCGRG 1 cut(s) 370
ApeKI GCWGC 5 cut(s) 251, 254, 257, 260, 913
Asp700I GAANNNNTTC 2 cut(s) 44, 475
Asp718I GGTACC 2 cut(s) 121, 898
AspLEI GCGC 1 cut(s) 751
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 215, 586, 839, 845
AvaI CYCGRG 1 cut(s) 370
BanI GGYRCC 3 cut(s) 121, 326, 898
BbvI GCAGC 5 cut(s) 263, 266, 269, 272, 925
BccI CCATC 2 cut(s) 858, 864
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 239, 276
BfaI CTAG 1 cut(s) 579
BisI GCNGC 5 cut(s) 252, 255, 258, 261, 914
BlpI GCTNAGC 2 cut(s) 378, 669
BlsI GCNGC 5 cut(s) 253, 256, 259, 262, 915
Bme1390I CCNGG 2 cut(s) 324, 334
BmeT110I CYCGRG 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 123, 328, 900
BmrFI CCNGG 2 cut(s) 324, 334
BmsI GCATC 2 cut(s) 430, 804
Bpu1102I GCTNAGC 2 cut(s) 378, 669
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 895
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 721, 830
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 1 cut(s) 752
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 3 cut(s) 709, 741, 919
BseLI CCNNNNNNNGG 3 cut(s) 323, 721, 830
BseMII CTCAG 3 cut(s) 297, 369, 683
BseNI ACTGG 1 cut(s) 752
BseRI GAGGAG 1 cut(s) 645
BseXI GCAGC 5 cut(s) 263, 266, 269, 272, 925
BshNI GGYRCC 3 cut(s) 121, 326, 898
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 3 cut(s) 333, 887, 896
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 3 cut(s) 323, 721, 830
BsmAI GTCTC 2 cut(s) 239, 276
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 2 cut(s) 44, 582
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 370
Bsp143I GATC 5 cut(s) 94, 299, 492, 765, 781
Bsp1720I GCTNAGC 2 cut(s) 378, 669
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 7 cut(s) 226, 574, 620, 644, 692, 902, 911
BspCNI CTCAG 3 cut(s) 298, 370, 682
BspLI GGNNCC 3 cut(s) 123, 328, 900
BspPI GGATC 2 cut(s) 102, 307
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 3 cut(s) 121, 326, 898
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 1 cut(s) 752
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 5 cut(s) 94, 299, 492, 765, 781
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 3 cut(s) 30, 75, 411
BstAPI GCANNNNNTGC 1 cut(s) 524
BstDEI CTNAG 4 cut(s) 136, 306, 378, 669
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 709, 741, 919
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 97, 302, 495, 768, 784
BstMAI GTCTC 2 cut(s) 239, 276
BstMBI GATC 5 cut(s) 94, 299, 492, 765, 781
BstMWI GCNNNNNNNGC 7 cut(s) 257, 260, 524, 691, 878, 887, 910
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 322, 332
BstV1I GCAGC 5 cut(s) 263, 266, 269, 272, 925
BstXI CCANNNNNNTGG 1 cut(s) 863
BtgI CCRYGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 754
BtsCI GGATG 3 cut(s) 709, 741, 919
BtsIMutI CAGTG 3 cut(s) 597, 759, 940
CfoI GCGC 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 886
Csp6I GTAC 3 cut(s) 122, 884, 899
CviAII CATG 3 cut(s) 21, 405, 524
CviQI GTAC 3 cut(s) 122, 884, 899
DdeI CTNAG 4 cut(s) 136, 306, 378, 669
DpnI GATC 5 cut(s) 96, 301, 494, 767, 783
DpnII GATC 5 cut(s) 94, 299, 492, 765, 781
Eam1104I CTCTTC 3 cut(s) 30, 75, 411
EarI CTCTTC 3 cut(s) 30, 75, 411
Eco130I CCWWGG 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 3 cut(s) 24, 408, 527
FaiI YATR 8 cut(s) 22, 406, 525, 660, 741, 786, 788, 879
FaqI GGGAC 1 cut(s) 771
FatI CATG 3 cut(s) 20, 404, 523
FauNDI CATATG 1 cut(s) 786
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 5 cut(s) 252, 255, 258, 261, 914
FokI GGATG 3 cut(s) 696, 748, 906
Fsp4HI GCNGC 5 cut(s) 252, 255, 258, 261, 914
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 750
GluI GCNGC 5 cut(s) 252, 255, 258, 261, 914
HapII CCGG 3 cut(s) 333, 887, 896
HhaI GCGC 1 cut(s) 751
Hin1II CATG 3 cut(s) 24, 408, 527
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 2 cut(s) 284, 400
HpaII CCGG 3 cut(s) 333, 887, 896
HphI GGTGA 4 cut(s) 215, 586, 839, 845
Hpy166II GTNNAC 2 cut(s) 604, 933
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 6 cut(s) 49, 190, 297, 372, 498, 587
Hpy8I GTNNAC 2 cut(s) 604, 933
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 3 cut(s) 67, 518, 940
HpyF10VI GCNNNNNNNGC 7 cut(s) 257, 260, 524, 691, 878, 887, 910
HpyF3I CTNAG 4 cut(s) 136, 306, 378, 669
Hsp92II CATG 3 cut(s) 24, 408, 527
HspAI GCGC 1 cut(s) 749
KpnI GGTACC 2 cut(s) 125, 902
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 5 cut(s) 94, 299, 492, 765, 781
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 5 cut(s) 24, 350, 619, 877, 931
Lsp1109I GCAGC 5 cut(s) 263, 266, 269, 272, 925
LweI GCATC 2 cut(s) 430, 804
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 622
MalI GATC 5 cut(s) 96, 301, 494, 767, 783
MboI GATC 5 cut(s) 94, 299, 492, 765, 781
MfeI CAATTG 1 cut(s) 57
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 530, 781
MnlI CCTC 9 cut(s) 70, 85, 222, 304, 340, 347, 623, 626, 834
MroXI GAANNNNTTC 2 cut(s) 44, 475
MseI TTAA 2 cut(s) 549, 654
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 3 cut(s) 333, 887, 896
MspR9I CCNGG 2 cut(s) 324, 334
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 2 cut(s) 44, 582
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 7 cut(s) 257, 260, 524, 691, 878, 887, 910
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 786
NdeII GATC 5 cut(s) 94, 299, 492, 765, 781
NlaIII CATG 3 cut(s) 24, 408, 527
NlaIV GGNNCC 3 cut(s) 123, 328, 900
OliI CACNNNNGTG 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 2 cut(s) 44, 582
PdmI GAANNNNTTC 2 cut(s) 44, 475
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 5 cut(s) 253, 256, 259, 262, 915
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 123, 328, 900
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 3 cut(s) 123, 885, 900
RsaNI GTAC 3 cut(s) 122, 884, 899
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 1 cut(s) 931
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 549, 654
SatI GCNGC 5 cut(s) 252, 255, 258, 261, 914
Sau3AI GATC 5 cut(s) 94, 299, 492, 765, 781
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 324, 334
SfaNI GCATC 2 cut(s) 430, 804
Sfr274I CTCGAG 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 370, 496
SmoI CTYRAG 2 cut(s) 370, 496
Sse9I AATT 1 cut(s) 57
SsiI CCGC 7 cut(s) 226, 574, 620, 644, 692, 902, 911
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 322, 332
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 5 cut(s) 48, 189, 371, 554, 932
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 2 cut(s) 549, 654
Tru9I TTAA 2 cut(s) 549, 654
TscAI CASTG 2 cut(s) 604, 759
TseI GCWGC 5 cut(s) 251, 254, 257, 260, 913
TspDTI ATGAA 3 cut(s) 261, 529, 572
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 2 cut(s) 604, 759
Van91I CCANNNNNTGG 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 2 cut(s) 44, 475
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.