MD06G1211700.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014455
Physical Location & Seq
Forward (+)
34442115 .. 34443666
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1211700.v1.1.491

Sequence Viewer

Length: 921 bp
ATGTCGAGTTCTAGCGTTTGGAACAAAGAAGAAGATAAAGAGTTCGAGAACGCAATTGCCATGCATTGGATCGATGAAAACTCGAAAGAAATGTGGGAAAAGATTGCTGAGTTGGTTCCAAGCAAGAGCATGGGAGAGTTGAAGCAGCACTACCAAATGCTAGTCGACGATGTGGGTGCAATCGAGGCGGGGCGCGTCTCCCCGCCTAACTACGCAGTTGATGAAGCTGCTAATACACTATCGTCTAGTAAGGACAGTGGTCATCGTGCTTCTTCTTCCGGTGCTTCGGCTTCGGATAAGAGATTGAACTGCGGTCACGGAGGTGGGTTTTCGGGTTTAGGTCATGACTCCGCCGGCCATGGCGGTAAGGGAGGGTCGAGGGCGGACCAAGAGAGGAAGAAAGGGATTCCGTGGACTGAAGAAGAGCATAGGTTATTTCTACTTGGTCTTGACAAGTTTGGGAAGGGCGATTGGAGAAGCATTTCAAGAAACTTTGTCATTTCCAGAACCCCAACCCAAGTAGCAAGCCACGCACAAAAATACTTCATCCGTTTGAACTCCATGAACAGAGACAGGAGGAGATCAAGTATCCATGACATTACAAGCGTCAACAACGGAGACGTCTCGTCTCACCAGCAGCCGCCAATTACCGGCCAACAGACCAACACGTACCCACCTAGTGCAGGCACCGCGATAAGAGTAGGAGGACCACAGACGGCCAAGCACCGGCCTCAGTCACACATGGCAGGTTTAGGGATGTATGGAGCACCGATGGGGCACCCGGTTTCTGCTCCTCCGGGACATATGGCGTCCGCGGTGGGCACTCCGGTTATGCTCCCTCCGGGCCACCATCCTCACGCCCATCCTCCATACGTCGTCCCAGTTGCTTACCCAATGGCACATCCAACAATGCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

307

Amino Acids

33.09

Weight (kDa)

8.58

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 54 1.6e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 137 - 182 2.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 686, 777
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 165
AccII CGCG 3 cut(s) 195, 692, 815
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 3 cut(s) 355, 652, 717
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 2 cut(s) 621, 809
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 4 cut(s) 66, 650, 683, 726
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 4 cut(s) 142, 307, 486, 556
AhdI GACNNNNNGTC 1 cut(s) 625
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 5 cut(s) 202, 564, 612, 628, 633
AlwI GGATC 1 cut(s) 77
AoxI GGCC 5 cut(s) 355, 652, 717, 728, 844
ApeKI GCWGC 3 cut(s) 145, 227, 637
Asp700I GAANNNNTTC 1 cut(s) 481
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 385, 707, 844
AsuC2I CCSGG 3 cut(s) 782, 798, 843
AsuHPI GGTGA 1 cut(s) 623
AvaII GGWCC 2 cut(s) 385, 707
BaeGI GKGCMC 2 cut(s) 780, 824
BanI GGYRCC 2 cut(s) 686, 777
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 3 cut(s) 157, 214, 649
BccI CCATC 3 cut(s) 766, 858, 870
BceAI ACGGC 1 cut(s) 732
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciVI GTATCC 1 cut(s) 599
BcnI CCSGG 3 cut(s) 782, 798, 843
BcoDI GTCTC 5 cut(s) 202, 564, 612, 628, 633
BfaI CTAG 4 cut(s) 12, 161, 246, 678
BfuAI ACCTGC 1 cut(s) 737
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 4 cut(s) 146, 228, 638, 641
BlsI GCNGC 4 cut(s) 147, 229, 639, 642
Bme1390I CCNGG 3 cut(s) 782, 798, 843
Bme18I GGWCC 2 cut(s) 385, 707
BmeRI GACNNNNNGTC 1 cut(s) 625
BmgT120I GGNCC 3 cut(s) 385, 707, 844
BmiI GGNNCC 3 cut(s) 117, 688, 779
BmrFI CCNGG 3 cut(s) 782, 798, 843
BmrI ACTGGG 1 cut(s) 875
BmuI ACTGGG 1 cut(s) 875
BoxI GACNNNNGTC 1 cut(s) 258
BpuMI CCSGG 3 cut(s) 782, 798, 843
Bsa29I ATCGAT 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 669
BsaHI GRCGYC 2 cut(s) 621, 809
BsaJI CCNNGG 3 cut(s) 358, 410, 813
BsaWI WCCGGW 2 cut(s) 278, 826
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 650, 683, 726
Bse118I RCCGGY 3 cut(s) 353, 650, 726
Bse1I ACTGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 3 cut(s) 358, 410, 813
BseGI GGATG 5 cut(s) 546, 762, 850, 862, 901
BseLI CCNNNNNNNGG 4 cut(s) 66, 650, 683, 726
BseMII CTCAG 2 cut(s) 99, 746
BseNI ACTGG 1 cut(s) 881
BseRI GAGGAG 2 cut(s) 592, 783
BseSI GKGCMC 2 cut(s) 780, 824
BseXI GCAGC 3 cut(s) 157, 214, 649
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 195, 692, 815
BshFI GGCC 5 cut(s) 357, 654, 719, 730, 846
BshNI GGYRCC 2 cut(s) 686, 777
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 8 cut(s) 279, 354, 651, 727, 782, 797, 827, 842
BslFI GGGAC 2 cut(s) 813, 863
BslI CCNNNNNNNGG 4 cut(s) 66, 650, 683, 726
BsmAI GTCTC 5 cut(s) 202, 564, 612, 628, 633
BsmBI CGTCTC 4 cut(s) 202, 612, 628, 633
BsmFI GGGAC 2 cut(s) 813, 863
BsnI GGCC 5 cut(s) 357, 654, 719, 730, 846
Bsp1286I GDGCHC 3 cut(s) 769, 780, 824
Bsp143I GATC 2 cut(s) 69, 581
Bsp19I CCATGG 1 cut(s) 358
BspANI GGCC 5 cut(s) 357, 654, 719, 730, 846
BspCNI CTCAG 2 cut(s) 100, 745
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 3 cut(s) 195, 692, 815
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 117, 688, 779
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 2 cut(s) 686, 777
BsrFI RCCGGY 3 cut(s) 353, 650, 726
BsrI ACTGG 1 cut(s) 881
BssAI RCCGGY 3 cut(s) 353, 650, 726
BssECI CCNNGG 3 cut(s) 358, 410, 813
BssMI GATC 2 cut(s) 69, 581
BssNI GRCGYC 2 cut(s) 621, 809
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 2 cut(s) 621, 809
BstBAI YACGTR 1 cut(s) 669
BstC8I GCNNGC 3 cut(s) 355, 526, 685
BstDEI CTNAG 2 cut(s) 108, 732
BstDSI CCRYGG 3 cut(s) 358, 410, 813
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 5 cut(s) 546, 762, 850, 862, 901
BstFNI CGCG 3 cut(s) 195, 692, 815
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 72, 584
BstMAI GTCTC 5 cut(s) 202, 564, 612, 628, 633
BstMBI GATC 2 cut(s) 69, 581
BstMWI GCNNNNNNNGC 3 cut(s) 185, 530, 689
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 780, 796, 841
BstSLI GKGCMC 2 cut(s) 780, 824
BstUI CGCG 3 cut(s) 195, 692, 815
BstV1I GCAGC 3 cut(s) 157, 214, 649
Bsu15I ATCGAT 1 cut(s) 72
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 5 cut(s) 357, 654, 719, 730, 846
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 3 cut(s) 358, 410, 813
BtsCI GGATG 5 cut(s) 546, 762, 850, 862, 901
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 355, 526, 685
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 3 cut(s) 353, 650, 726
Cfr13I GGNCC 3 cut(s) 385, 707, 844
Cfr42I CCGCGG 1 cut(s) 816
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 3 cut(s) 184, 595, 798
Csp6I GTAC 1 cut(s) 670
CviAII CATG 7 cut(s) 61, 130, 344, 359, 562, 593, 742
CviJI RGCY 9 cut(s) 227, 290, 357, 528, 640, 654, 719, 730, 846
CviKI_1 RGCY 9 cut(s) 227, 290, 357, 528, 640, 654, 719, 730, 846
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 2 cut(s) 108, 732
DpnI GATC 2 cut(s) 71, 583
DpnII GATC 2 cut(s) 69, 581
DraIII CACNNNGTG 1 cut(s) 680
DriI GACNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 3 cut(s) 355, 652, 717
Eam1104I CTCTTC 1 cut(s) 417
Eam1105I GACNNNNNGTC 1 cut(s) 625
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 2 cut(s) 340, 398
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 385, 707
Eco57I CTGAAG 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 358
Esp3I CGTCTC 4 cut(s) 202, 612, 628, 633
FaeI CATG 7 cut(s) 64, 133, 347, 362, 565, 596, 745
FaqI GGGAC 2 cut(s) 813, 863
FatI CATG 7 cut(s) 60, 129, 343, 358, 561, 592, 741
FauI CCCGC 2 cut(s) 181, 210
FauNDI CATATG 1 cut(s) 804
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 146, 228, 638, 641
FokI GGATG 5 cut(s) 533, 769, 837, 849, 888
Fsp4HI GCNGC 4 cut(s) 146, 228, 638, 641
FspBI CTAG 4 cut(s) 12, 161, 246, 678
GlaI GCGC 1 cut(s) 194
GluI GCNGC 4 cut(s) 146, 228, 638, 641
HaeIII GGCC 5 cut(s) 357, 654, 719, 730, 846
HapII CCGG 8 cut(s) 279, 354, 651, 727, 782, 797, 827, 842
HgaI GACGC 3 cut(s) 184, 595, 798
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 2 cut(s) 621, 809
Hin1II CATG 7 cut(s) 64, 133, 347, 362, 565, 596, 745
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 2 cut(s) 166, 610
HindII GTYRAC 2 cut(s) 166, 610
HinfI GANTC 2 cut(s) 347, 406
HpaII CCGG 8 cut(s) 279, 354, 651, 727, 782, 797, 827, 842
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 3 cut(s) 166, 414, 610
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 5 cut(s) 46, 344, 449, 486, 504
Hpy8I GTNNAC 3 cut(s) 166, 414, 610
Hpy99I CGWCG 2 cut(s) 170, 878
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 3 cut(s) 621, 668, 873
HpyCH4V TGCA 4 cut(s) 64, 179, 683, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 530, 689
HpyF3I CTNAG 2 cut(s) 108, 732
HpySE526I ACGT 3 cut(s) 621, 668, 873
Hsp92I GRCGYC 2 cut(s) 621, 809
Hsp92II CATG 7 cut(s) 64, 133, 347, 362, 565, 596, 745
HspAI GCGC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 816
Kzo9I GATC 2 cut(s) 69, 581
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 3 cut(s) 764, 796, 840
Lsp1109I GCAGC 3 cut(s) 157, 214, 649
MaeI CTAG 4 cut(s) 12, 161, 246, 678
MaeII ACGT 3 cut(s) 621, 668, 873
MaeIII GTNAC 2 cut(s) 314, 735
MalI GATC 2 cut(s) 71, 583
MboI GATC 2 cut(s) 69, 581
MboII GAAGA 7 cut(s) 41, 44, 264, 267, 409, 431, 434
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 3 cut(s) 769, 780, 824
MluCI AATT 2 cut(s) 54, 645
MlyI GAGTC 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 481
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 8 cut(s) 279, 354, 651, 727, 782, 797, 827, 842
MspR9I CCNGG 3 cut(s) 782, 798, 843
MunI CAATTG 1 cut(s) 54
MvnI CGCG 3 cut(s) 195, 692, 815
MwoI GCNNNNNNNGC 3 cut(s) 185, 530, 689
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 3 cut(s) 782, 798, 843
NcoI CCATGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 804
NdeII GATC 2 cut(s) 69, 581
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 7 cut(s) 64, 133, 347, 362, 565, 596, 745
NlaIV GGNNCC 3 cut(s) 117, 688, 779
NmuCI GTSAC 2 cut(s) 314, 735
NsiI ATGCAT 1 cut(s) 66
OliI CACNNNNGTG 1 cut(s) 321
PagI TCATGA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 417
PdiI GCCGGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 4 cut(s) 147, 229, 639, 642
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 669
PshAI GACNNNNGTC 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 117, 688, 779
PspPI GGNCC 3 cut(s) 385, 707, 844
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 321
SacII CCGCGG 1 cut(s) 816
SalI GTCGAC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 417
SatI GCNGC 4 cut(s) 146, 228, 638, 641
Sau3AI GATC 2 cut(s) 69, 581
Sau96I GGNCC 3 cut(s) 385, 707, 844
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 782, 798, 843
SduI GDGCHC 3 cut(s) 769, 780, 824
SetI ASST 9 cut(s) 229, 325, 343, 434, 624, 671, 679, 751, 876
Sfr303I CCGCGG 1 cut(s) 816
SgrBI CCGCGG 1 cut(s) 816
SinI GGWCC 2 cut(s) 385, 707
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 2 cut(s) 54, 645
SspMI CTAG 4 cut(s) 12, 161, 246, 678
StyD4I CCNGG 3 cut(s) 780, 796, 841
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 3 cut(s) 624, 671, 876
TaqI TCGA 7 cut(s) 5, 45, 72, 83, 165, 183, 377
TasI AATT 2 cut(s) 54, 645
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 314, 735
TseI GCWGC 3 cut(s) 145, 227, 637
Tsp45I GTSAC 2 cut(s) 314, 735
TspDTI ATGAA 4 cut(s) 90, 237, 535, 578
TspGWI ACGGA 4 cut(s) 333, 399, 539, 630
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 385, 707
XagI CCTNNNNNAGG 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 4 cut(s) 12, 161, 246, 678
ZraI GACGTC 1 cut(s) 622
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.