FvH4_5g12670
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014455
Physical Location & Seq
Reverse (-)
7142615 .. 7144752
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12670.t1

Sequence Viewer

Length: 912 bp
ATGTCTTGCAACGCTGCTTGGAGCCGAGAAGAAGACAAGGCCTTCGAGAACGCAATAGCTTTGCATTGGATCGAGGACGACGAGGAAGGTTCATGGGACAAGATTGCTTCTTTGGTTCCAACCAAGAGCATGGAGGAGTTGAAACGACACTACCAAATGTTAGTTGACGATGTGGGTGCAATCGAGTCTGGTAATATTCCTGTTCCTATTTATGGTGGGGATGAAGCAGCTACCACATCTGTGAGCAGCACTGCTCGTGCTTCTTCTTCTAGTGCTTCTGATAAGAGATTGAGTAGCAGCCATGGAAATAATGGAGGTGGGTTTTCGGCTTTGGGTCATGACTCTTCTGGCCATGGAAGTAAAGGAGGGTCCAGGTCAGAACAAGAAAGAAAGAAAGGGATCCCATGGACTGAAGAAGAACACAGGTTATTTCTACTTGGTCTTGACAAGTTTGGCAAGGGAGATTGGAGAAGCATTTCAAGGAACTTTGTCATTTCCAGGACCCCTACACAAGTGGCCAGTCATGCGCAGAAGTACTTCATTCGCTTGAACTCGATGAATCGAGACAGGAGAAGGTCGAGTATCCATGACATTACTAGTGTCAACAATGGTGGAGATGTCCCAAATCATCAGGTACCAATTACAGGGCAACAGAGCAATGCTTATGCCCCAGGTGCAGCCGCGATAGGACCACCATCGGTGAAGCATAGGCCTCATCAGCCGCATATGGCGGGTTTAGGCATGTATGGAGCGCCGATGGGGCACCCGGTATCTGCTCCTCCGGGGCATATGGCATCCGCGGTTGGCACGCCTGTCATGCTTCCTCCAGGACACCATCCCCATCACGCCCATCCTCCCCCATATGTTGTTCCAGTTGCTTACCCAATGGCACATCCCACAATGCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

32.63

Weight (kDa)

7.08

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 54 1.6e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 135 - 180 2.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 528
Acc65I GGTACC 1 cut(s) 634
AccB1I GGYRCC 2 cut(s) 634, 762
AccII CGCG 2 cut(s) 683, 800
AciI CCGC 5 cut(s) 681, 722, 731, 798, 800
AclWI GGATC 3 cut(s) 77, 394, 407
AcoI YGGCCR 2 cut(s) 349, 516
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 536, 636
AfiI CCNNNNNNNGG 2 cut(s) 212, 644
AgsI TTSAA 3 cut(s) 142, 480, 550
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 4 cut(s) 371, 497, 670, 826
AleI CACNNNNGTG 1 cut(s) 239
AluBI AGCT 2 cut(s) 59, 230
AluI AGCT 2 cut(s) 59, 230
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 3 cut(s) 77, 394, 407
AoxI GGCC 4 cut(s) 39, 349, 516, 710
ApeKI GCWGC 5 cut(s) 14, 227, 246, 297, 677
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 2 cut(s) 475, 536
Asp718I GGTACC 1 cut(s) 634
AspLEI GCGC 2 cut(s) 529, 754
AspS9I GGNCC 3 cut(s) 369, 501, 689
AsuC2I CCSGG 2 cut(s) 767, 783
AsuHPI GGTGA 1 cut(s) 712
AvaII GGWCC 3 cut(s) 369, 501, 689
BaeGI GKGCMC 1 cut(s) 765
BalI TGGCCA 2 cut(s) 351, 518
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 2 cut(s) 634, 762
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 239, 258, 309, 689
BccI CCATC 5 cut(s) 703, 751, 843, 849, 858
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 4 cut(s) 373, 499, 672, 828
BciVI GTATCC 1 cut(s) 593
BcnI CCSGG 2 cut(s) 767, 783
BcoDI GTCTC 1 cut(s) 558
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 270, 597
BfoI RGCGCY 1 cut(s) 755
BfuI GTATCC 1 cut(s) 593
BglI GCCNNNNNGGC 1 cut(s) 760
BisI GCNGC 7 cut(s) 15, 228, 247, 298, 678, 681, 722
BlsI GCNGC 7 cut(s) 16, 229, 248, 299, 679, 682, 723
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 6 cut(s) 373, 499, 672, 767, 783, 828
Bme18I GGWCC 3 cut(s) 369, 501, 689
BmgT120I GGNCC 3 cut(s) 369, 501, 689
BmiI GGNNCC 7 cut(s) 23, 117, 370, 401, 503, 636, 764
BmrFI CCNGG 6 cut(s) 373, 499, 672, 767, 783, 828
BmsI GCATC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 810
BpuMI CCSGG 2 cut(s) 767, 783
BsaJI CCNNGG 6 cut(s) 301, 352, 404, 670, 782, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 644
Bse1I ACTGG 2 cut(s) 519, 872
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 4 cut(s) 373, 499, 672, 828
BseDI CCNNGG 6 cut(s) 301, 352, 404, 670, 782, 798
BseGI GGATG 5 cut(s) 226, 794, 835, 850, 892
BseLI CCNNNNNNNGG 2 cut(s) 212, 644
BseMI GCAATG 1 cut(s) 664
BseNI ACTGG 2 cut(s) 519, 872
BseRI GAGGAG 2 cut(s) 149, 768
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 4 cut(s) 239, 258, 309, 689
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 2 cut(s) 683, 800
BshFI GGCC 4 cut(s) 41, 351, 518, 712
BshNI GGYRCC 2 cut(s) 634, 762
BsiSI CCGG 2 cut(s) 767, 782
BslFI GGGAC 2 cut(s) 110, 605
BslI CCNNNNNNNGG 2 cut(s) 212, 644
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 110, 605
BsnI GGCC 4 cut(s) 41, 351, 518, 712
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 2 cut(s) 69, 399
Bsp19I CCATGG 3 cut(s) 301, 352, 404
BspACI CCGC 5 cut(s) 681, 722, 731, 798, 800
BspANI GGCC 4 cut(s) 41, 351, 518, 712
BspFNI CGCG 2 cut(s) 683, 800
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 7 cut(s) 23, 117, 370, 401, 503, 636, 764
BspPI GGATC 3 cut(s) 77, 394, 407
BspT107I GGYRCC 2 cut(s) 634, 762
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 519, 872
BssECI CCNNGG 6 cut(s) 301, 352, 404, 670, 782, 798
BssMI GATC 2 cut(s) 69, 399
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 3 cut(s) 301, 352, 404
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 4 cut(s) 373, 499, 672, 828
Bst6I CTCTTC 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 809
BstDSI CCRYGG 4 cut(s) 301, 352, 404, 798
BstF5I GGATG 5 cut(s) 226, 794, 835, 850, 892
BstFNI CGCG 2 cut(s) 683, 800
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 2 cut(s) 529, 754
BstKTI GATC 2 cut(s) 72, 402
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 2 cut(s) 69, 399
BstMWI GCNNNNNNNGC 5 cut(s) 524, 674, 718, 760, 817
BstNI CCWGG 4 cut(s) 373, 499, 672, 828
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 6 cut(s) 371, 497, 670, 765, 781, 826
BstSLI GKGCMC 1 cut(s) 765
BstUI CGCG 2 cut(s) 683, 800
BstV1I GCAGC 4 cut(s) 239, 258, 309, 689
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 399
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 4 cut(s) 41, 351, 518, 712
BtgI CCRYGG 4 cut(s) 301, 352, 404, 798
BtsCI GGATG 5 cut(s) 226, 794, 835, 850, 892
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 809
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 529, 754
Cfr13I GGNCC 3 cut(s) 369, 501, 689
Cfr42I CCGCGG 1 cut(s) 801
Csp6I GTAC 2 cut(s) 535, 635
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviQI GTAC 2 cut(s) 535, 635
DpnI GATC 2 cut(s) 71, 401
DpnII GATC 2 cut(s) 69, 399
EaeI YGGCCR 2 cut(s) 349, 516
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco130I CCWWGG 3 cut(s) 301, 352, 404
Eco147I AGGCCT 2 cut(s) 41, 712
Eco47I GGWCC 3 cut(s) 369, 501, 689
Eco57I CTGAAG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 4 cut(s) 371, 497, 670, 826
EcoT14I CCWWGG 3 cut(s) 301, 352, 404
ErhI CCWWGG 3 cut(s) 301, 352, 404
FaqI GGGAC 2 cut(s) 110, 605
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 3 cut(s) 726, 789, 862
Fnu4HI GCNGC 7 cut(s) 15, 228, 247, 298, 678, 681, 722
FokI GGATG 5 cut(s) 233, 781, 822, 837, 879
Fsp4HI GCNGC 7 cut(s) 15, 228, 247, 298, 678, 681, 722
FspBI CTAG 2 cut(s) 270, 597
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 2 cut(s) 528, 753
GluI GCNGC 7 cut(s) 15, 228, 247, 298, 678, 681, 722
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 4 cut(s) 41, 351, 518, 712
HapII CCGG 2 cut(s) 767, 782
HhaI GCGC 2 cut(s) 529, 754
Hin6I GCGC 2 cut(s) 527, 752
HinP1I GCGC 2 cut(s) 527, 752
HincII GTYRAC 2 cut(s) 166, 604
HindII GTYRAC 2 cut(s) 166, 604
HinfI GANTC 3 cut(s) 185, 341, 559
HpaII CCGG 2 cut(s) 767, 782
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 2 cut(s) 166, 604
Hpy188I TCNGA 2 cut(s) 280, 379
Hpy188III TCNNGA 4 cut(s) 46, 338, 443, 563
Hpy8I GTNNAC 2 cut(s) 166, 604
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 52, 80, 567
HpyCH4V TGCA 5 cut(s) 9, 64, 179, 677, 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 674, 718, 760, 817
HspAI GCGC 2 cut(s) 527, 752
KpnI GGTACC 1 cut(s) 638
KspI CCGCGG 1 cut(s) 801
Kzo9I GATC 2 cut(s) 69, 399
LmnI GCTCC 3 cut(s) 21, 749, 781
Lsp1109I GCAGC 4 cut(s) 239, 258, 309, 689
LweI GCATC 1 cut(s) 803
MaeI CTAG 2 cut(s) 270, 597
MalI GATC 2 cut(s) 71, 401
MboI GATC 2 cut(s) 69, 399
MboII GAAGA 7 cut(s) 41, 44, 255, 258, 336, 425, 428
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 765
MlsI TGGCCA 2 cut(s) 351, 518
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 2 cut(s) 351, 518
MlyI GAGTC 2 cut(s) 194, 335
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 9 cut(s) 67, 76, 127, 308, 359, 723, 789, 834, 864
Mox20I TGGCCA 2 cut(s) 351, 518
MroXI GAANNNNTTC 2 cut(s) 475, 536
MscI TGGCCA 2 cut(s) 351, 518
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 2 cut(s) 351, 518
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 2 cut(s) 767, 782
MspR9I CCNGG 6 cut(s) 373, 499, 672, 767, 783, 828
MvaI CCWGG 4 cut(s) 373, 499, 672, 828
MvnI CGCG 2 cut(s) 683, 800
MwoI GCNNNNNNNGC 5 cut(s) 524, 674, 718, 760, 817
NciI CCSGG 2 cut(s) 767, 783
NcoI CCATGG 3 cut(s) 301, 352, 404
NdeI CATATG 3 cut(s) 726, 789, 862
NdeII GATC 2 cut(s) 69, 399
NlaIV GGNNCC 7 cut(s) 23, 117, 370, 401, 503, 636, 764
NmeAIII GCCGAG 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 528
NspI RCATGY 1 cut(s) 745
OliI CACNNNNGTG 1 cut(s) 239
PagI TCATGA 1 cut(s) 337
PceI AGGCCT 2 cut(s) 41, 712
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 475, 536
PfeI GAWTC 1 cut(s) 559
PfoI TCCNGGA 2 cut(s) 497, 826
PkrI GCNGC 7 cut(s) 16, 229, 248, 299, 679, 682, 723
PleI GAGTC 2 cut(s) 193, 335
PpsI GAGTC 2 cut(s) 193, 335
PpuMI RGGWCCY 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 501
Psp6I CCWGG 4 cut(s) 371, 497, 670, 826
PspGI CCWGG 4 cut(s) 371, 497, 670, 826
PspN4I GGNNCC 7 cut(s) 23, 117, 370, 401, 503, 636, 764
PspPI GGNCC 3 cut(s) 369, 501, 689
PspPPI RGGWCCY 1 cut(s) 501
PsuI RGATCY 1 cut(s) 399
RsaI GTAC 2 cut(s) 536, 636
RsaNI GTAC 2 cut(s) 535, 635
RseI CAYNNNNRTG 1 cut(s) 239
SacII CCGCGG 1 cut(s) 801
SatI GCNGC 7 cut(s) 15, 228, 247, 298, 678, 681, 722
Sau3AI GATC 2 cut(s) 69, 399
Sau96I GGNCC 3 cut(s) 369, 501, 689
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 194, 335
ScrFI CCNGG 6 cut(s) 373, 499, 672, 767, 783, 828
SduI GDGCHC 1 cut(s) 765
SetI ASST 9 cut(s) 61, 91, 232, 319, 377, 428, 578, 636, 676
SfaNI GCATC 1 cut(s) 803
Sfr303I CCGCGG 1 cut(s) 801
SgrBI CCGCGG 1 cut(s) 801
SinI GGWCC 3 cut(s) 369, 501, 689
SmiMI CAYNNNNRTG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 1 cut(s) 639
SseBI AGGCCT 2 cut(s) 41, 712
SsiI CCGC 5 cut(s) 681, 722, 731, 798, 800
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 270, 597
StuI AGGCCT 2 cut(s) 41, 712
StyD4I CCNGG 6 cut(s) 371, 497, 670, 765, 781, 826
StyI CCWWGG 3 cut(s) 301, 352, 404
TaqI TCGA 6 cut(s) 45, 72, 183, 554, 562, 578
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 534
TauI GCSGC 2 cut(s) 683, 724
TfiI GAWTC 1 cut(s) 559
TscAI CASTG 1 cut(s) 256
TseI GCWGC 5 cut(s) 14, 227, 246, 297, 677
TspDTI ATGAA 4 cut(s) 81, 237, 529, 572
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 3 cut(s) 369, 501, 689
XceI RCATGY 1 cut(s) 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 475, 536
XspI CTAG 2 cut(s) 270, 597
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.