Rh7BG068700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014455
Physical Location & Seq
Forward (+)
4570045 .. 4571324
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG068700.1

Sequence Viewer

Length: 906 bp
ATGTCGAGTTGGACCCGAGAAGAAGACAAGGCCTTCGAGAACGCAATCGCTTTGCATTGGATCGAGGACGATGAGGAATCATCGTGGGACAAGATAGCGTCTTTGGTTCCGAGCAAGAGCATGGAGGAGTTGAAACGACACTACCAAATGCTAGTGGAAGATGTGAGTGCAATTGTGTCAGGGAACATTCCGGTTCCGAATTATGGAGGGGAAGAAGCTACCACATCGGTGAGCAAGGAGAGCAGTAGTGCTCGGGCTTCTTCTTCTGGGGTTTCAGATAAGAGATTGAGTAGTGGCCATGGAAATGGAGGTGGGTTTTCGGCTTTGGGTCATGACTCGTCTGGTCATGGAAGTAAAGGAGGGTCCAGGTCAGACCAAGAAAGAAAGAAAGGGATTCCATGGACAGAAGAAGAGCACAGGTTATTTCTACTTGGTCTTGACAAGTTTGGCAAGGGAGATTGGAGGAGCATTTCAAGGAACTTTGTCATTTCCAGGACCCCTACACAAGTGGCTAGCCATGCGCAGAAGTACTTCATTCGCTTGAACTCGATGAATCGAGACAGGAGGAGATCGAGTATCCATGACATTACCAGTGTCAACAATGGTGGGGATGTCCCATCTCATCAGGCACCAATTACAGGGCAACAGAGCAATGCTTATGCCCCAAGTGCAGCCGCGATAGGACCACCATCGGTGAAGCATAGGCCTCATCAGCCGCATATGGCGGGTTTAGGAATGTATGGAGCGCCGATGGGGCACCCAGTTTCTGCTCCTCCGGGGCATATGGCATCCGCGGTTGGCACTCCTGTTATGCTTCCTCCAGGGCACCATCCCCACCACGCCCATCCTCCCCCGTATGTTGTCCCAGTTGCTTACCCAATGGCACATCCGACAATGCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

301

Amino Acids

32.5

Weight (kDa)

7.41

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 3 - 51 6.4e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 133 - 178 2.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 522
AccB1I GGYRCC 3 cut(s) 628, 756, 825
AccII CGCG 2 cut(s) 677, 794
AciI CCGC 5 cut(s) 675, 716, 725, 792, 794
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 2 cut(s) 203, 638
AgsI TTSAA 3 cut(s) 133, 474, 544
AjnI CCWGG 3 cut(s) 365, 491, 820
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 2 cut(s) 253, 417
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 2 cut(s) 15, 252
AoxI GGCC 3 cut(s) 30, 295, 704
ApeKI GCWGC 1 cut(s) 671
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 2 cut(s) 523, 748
AspS9I GGNCC 4 cut(s) 12, 363, 495, 683
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 2 cut(s) 241, 706
AsuNHI GCTAGC 1 cut(s) 512
AvaI CYCGRG 2 cut(s) 15, 252
AvaII GGWCC 4 cut(s) 12, 363, 495, 683
BaeGI GKGCMC 2 cut(s) 759, 828
BalI TGGCCA 1 cut(s) 297
BanI GGYRCC 3 cut(s) 628, 756, 825
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 253, 417
BbvI GCAGC 1 cut(s) 683
BccI CCATC 5 cut(s) 625, 697, 745, 837, 852
BciT130I CCWGG 3 cut(s) 367, 493, 822
BciVI GTATCC 1 cut(s) 587
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 2 cut(s) 152, 513
BfoI RGCGCY 1 cut(s) 749
BfuI GTATCC 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 754
BisI GCNGC 3 cut(s) 672, 675, 716
BlsI GCNGC 3 cut(s) 673, 676, 717
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 4 cut(s) 367, 493, 777, 822
Bme18I GGWCC 4 cut(s) 12, 363, 495, 683
BmeT110I CYCGRG 2 cut(s) 15, 252
BmgT120I GGNCC 4 cut(s) 12, 363, 495, 683
BmiI GGNNCC 8 cut(s) 14, 108, 195, 364, 497, 630, 758, 827
BmrFI CCNGG 4 cut(s) 367, 493, 777, 822
BmrI ACTGGG 2 cut(s) 755, 860
BmsI GCATC 1 cut(s) 797
BmtI GCTAGC 1 cut(s) 516
BmuI ACTGGG 2 cut(s) 755, 860
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 777
BsaJI CCNNGG 5 cut(s) 298, 398, 776, 792, 821
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 638
Bse1I ACTGG 3 cut(s) 591, 761, 866
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 3 cut(s) 367, 493, 822
BseDI CCNNGG 5 cut(s) 298, 398, 776, 792, 821
BseGI GGATG 5 cut(s) 616, 788, 829, 844, 886
BseLI CCNNNNNNNGG 2 cut(s) 203, 638
BseMI GCAATG 1 cut(s) 658
BseNI ACTGG 3 cut(s) 591, 761, 866
BseRI GAGGAG 4 cut(s) 140, 478, 580, 762
BseSI GKGCMC 2 cut(s) 759, 828
BseXI GCAGC 1 cut(s) 683
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 2 cut(s) 677, 794
BshFI GGCC 3 cut(s) 32, 297, 706
BshNI GGYRCC 3 cut(s) 628, 756, 825
BsiHKAI GWGCWC 2 cut(s) 253, 417
BsiHKCI CYCGRG 2 cut(s) 15, 252
BsiSI CCGG 2 cut(s) 191, 776
BslFI GGGAC 3 cut(s) 101, 599, 848
BslI CCNNNNNNNGG 2 cut(s) 203, 638
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 3 cut(s) 101, 599, 848
BsnI GGCC 3 cut(s) 32, 297, 706
BsoBI CYCGRG 2 cut(s) 15, 252
Bsp1286I GDGCHC 4 cut(s) 253, 417, 759, 828
Bsp143I GATC 2 cut(s) 60, 569
Bsp19I CCATGG 2 cut(s) 298, 398
BspACI CCGC 5 cut(s) 675, 716, 725, 792, 794
BspANI GGCC 3 cut(s) 32, 297, 706
BspFNI CGCG 2 cut(s) 677, 794
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 8 cut(s) 14, 108, 195, 364, 497, 630, 758, 827
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 3 cut(s) 628, 756, 825
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 3 cut(s) 591, 761, 866
BssECI CCNNGG 5 cut(s) 298, 398, 776, 792, 821
BssMI GATC 2 cut(s) 60, 569
BssT1I CCWWGG 2 cut(s) 298, 398
Bst2UI CCWGG 3 cut(s) 367, 493, 822
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 514
BstDSI CCRYGG 3 cut(s) 298, 398, 792
BstF5I GGATG 5 cut(s) 616, 788, 829, 844, 886
BstFNI CGCG 2 cut(s) 677, 794
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 2 cut(s) 523, 748
BstKTI GATC 2 cut(s) 63, 572
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 2 cut(s) 60, 569
BstMWI GCNNNNNNNGC 5 cut(s) 240, 518, 668, 712, 754
BstNI CCWGG 3 cut(s) 367, 493, 822
BstSCI CCNGG 4 cut(s) 365, 491, 775, 820
BstSLI GKGCMC 2 cut(s) 759, 828
BstUI CGCG 2 cut(s) 677, 794
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 305
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 3 cut(s) 32, 297, 706
BtgI CCRYGG 3 cut(s) 298, 398, 792
BtsCI GGATG 5 cut(s) 616, 788, 829, 844, 886
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 331
CfoI GCGC 2 cut(s) 523, 748
Cfr13I GGNCC 4 cut(s) 12, 363, 495, 683
Cfr42I CCGCGG 1 cut(s) 795
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 529
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 7 cut(s) 121, 299, 332, 347, 399, 518, 581
CviQI GTAC 1 cut(s) 529
DpnI GATC 2 cut(s) 62, 571
DpnII GATC 2 cut(s) 60, 569
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 298, 398
Eco147I AGGCCT 2 cut(s) 32, 706
Eco47I GGWCC 4 cut(s) 12, 363, 495, 683
Eco88I CYCGRG 2 cut(s) 15, 252
EcoO109I RGGNCCY 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 365, 491, 820
EcoT14I CCWWGG 2 cut(s) 298, 398
ErhI CCWWGG 2 cut(s) 298, 398
FaeI CATG 7 cut(s) 124, 302, 335, 350, 402, 521, 584
FaqI GGGAC 3 cut(s) 101, 599, 848
FatI CATG 7 cut(s) 120, 298, 331, 346, 398, 517, 580
FauI CCCGC 1 cut(s) 718
FauNDI CATATG 2 cut(s) 720, 783
Fnu4HI GCNGC 3 cut(s) 672, 675, 716
FokI GGATG 5 cut(s) 623, 775, 816, 831, 873
Fsp4HI GCNGC 3 cut(s) 672, 675, 716
FspBI CTAG 2 cut(s) 152, 513
FspI TGCGCA 1 cut(s) 522
GlaI GCGC 2 cut(s) 522, 747
GluI GCNGC 3 cut(s) 672, 675, 716
GsuI CTGGAG 1 cut(s) 804
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 3 cut(s) 32, 297, 706
HapII CCGG 2 cut(s) 191, 776
HgaI GACGC 1 cut(s) 87
HhaI GCGC 2 cut(s) 523, 748
Hin1II CATG 7 cut(s) 124, 302, 335, 350, 402, 521, 584
Hin6I GCGC 2 cut(s) 521, 746
HinP1I GCGC 2 cut(s) 521, 746
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 77, 335, 394, 553
HpaII CCGG 2 cut(s) 191, 776
HphI GGTGA 2 cut(s) 241, 706
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 5 cut(s) 111, 198, 277, 373, 891
Hpy188III TCNNGA 4 cut(s) 37, 332, 437, 557
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 55, 170, 671, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 518, 668, 712, 754
Hsp92II CATG 7 cut(s) 124, 302, 335, 350, 402, 521, 584
HspAI GCGC 2 cut(s) 521, 746
KspI CCGCGG 1 cut(s) 795
Kzo9I GATC 2 cut(s) 60, 569
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 465, 743, 775
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 1 cut(s) 797
MaeI CTAG 2 cut(s) 152, 513
MalI GATC 2 cut(s) 62, 571
MboI GATC 2 cut(s) 60, 569
MboII GAAGA 8 cut(s) 32, 35, 170, 224, 252, 255, 419, 422
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 4 cut(s) 253, 417, 759, 828
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 3 cut(s) 171, 199, 633
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 1 cut(s) 329
Mox20I TGGCCA 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 530
MscI TGGCCA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 227, 303
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 2 cut(s) 191, 776
MspR9I CCNGG 4 cut(s) 367, 493, 777, 822
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 3 cut(s) 367, 493, 822
MvnI CGCG 2 cut(s) 677, 794
MwoI GCNNNNNNNGC 5 cut(s) 240, 518, 668, 712, 754
NciI CCSGG 1 cut(s) 777
NcoI CCATGG 2 cut(s) 298, 398
NdeI CATATG 2 cut(s) 720, 783
NdeII GATC 2 cut(s) 60, 569
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 7 cut(s) 124, 302, 335, 350, 402, 521, 584
NlaIV GGNNCC 8 cut(s) 14, 108, 195, 364, 497, 630, 758, 827
NsbI TGCGCA 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 227
PagI TCATGA 1 cut(s) 331
PceI AGGCCT 2 cut(s) 32, 706
PciSI GCTCTTC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 77, 394, 553
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 3 cut(s) 673, 676, 717
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 365, 491, 820
PspGI CCWGG 3 cut(s) 365, 491, 820
PspN4I GGNNCC 8 cut(s) 14, 108, 195, 364, 497, 630, 758, 827
PspPI GGNCC 4 cut(s) 12, 363, 495, 683
PspPPI RGGWCCY 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 767
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 2 cut(s) 227, 303
SacII CCGCGG 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 405
SatI GCNGC 3 cut(s) 672, 675, 716
Sau3AI GATC 2 cut(s) 60, 569
Sau96I GGNCC 4 cut(s) 12, 363, 495, 683
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 4 cut(s) 367, 493, 777, 822
SduI GDGCHC 4 cut(s) 253, 417, 759, 828
SetI ASST 4 cut(s) 220, 313, 371, 422
SfaNI GCATC 1 cut(s) 797
Sfr303I CCGCGG 1 cut(s) 795
SgrBI CCGCGG 1 cut(s) 795
SinI GGWCC 4 cut(s) 12, 363, 495, 683
SmiMI CAYNNNNRTG 2 cut(s) 227, 303
Sse9I AATT 3 cut(s) 171, 199, 633
SseBI AGGCCT 2 cut(s) 32, 706
SsiI CCGC 5 cut(s) 675, 716, 725, 792, 794
SspMI CTAG 2 cut(s) 152, 513
StuI AGGCCT 2 cut(s) 32, 706
StyD4I CCNGG 4 cut(s) 365, 491, 775, 820
StyI CCWWGG 2 cut(s) 298, 398
TaqI TCGA 6 cut(s) 5, 36, 63, 548, 556, 572
TasI AATT 3 cut(s) 171, 199, 633
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 677, 718
TfiI GAWTC 3 cut(s) 77, 394, 553
TscAI CASTG 1 cut(s) 598
TseI GCWGC 1 cut(s) 671
TspDTI ATGAA 2 cut(s) 523, 566
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 4 cut(s) 12, 363, 495, 683
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 2 cut(s) 152, 513
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.