Rroxscaffold_3G00269440
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014455
Physical Location & Seq
Reverse (-)
62320481 .. 62320837
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269440.1

Sequence Viewer

Length: 357 bp
ATGAATCGAGACAGGAGGAGATCGAGTATCCATGACATTACCAGTGTCAACAATGGTGGGGATGTCCCATCTCATCAGGCACCAATTACAGGGCAACAGAGCAATGCTTATGCCCCAAGTGCAGCCGCGATAGGACCACCATCGGTGAAGCATAGGCCTCATCAGCCGCATATGGCGGGTTTAGGAATGTATGGAGCGCCGATGGGGCACCCAGTTTCTGCTCCTCCGGGGCATATGGCATCCGCGGTTGGCACTCCTGTTATGCTTCCTCCAGGGCACCATCCCCACCACGCCCATCCTCCCCCGTATGTTGTCCCAGTTGCTTACCCAATGGCACATCCGACAATGCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

118

Amino Acids

12.41

Weight (kDa)

9.81

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 79, 207, 276
AccII CGCG 2 cut(s) 128, 245
AciI CCGC 5 cut(s) 126, 167, 176, 243, 245
AfiI CCNNNNNNNGG 1 cut(s) 89
AjnI CCWGG 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 210, 279
BanI GGYRCC 3 cut(s) 79, 207, 276
BbvI GCAGC 1 cut(s) 134
BccI CCATC 5 cut(s) 76, 148, 196, 288, 303
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 200
BfuI GTATCC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 205
BisI GCNGC 3 cut(s) 123, 126, 167
BlsI GCNGC 3 cut(s) 124, 127, 168
Bme1390I CCNGG 2 cut(s) 228, 273
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 81, 209, 278
BmrFI CCNGG 2 cut(s) 228, 273
BmrI ACTGGG 2 cut(s) 206, 311
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 2 cut(s) 206, 311
BpmI CTGGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 227, 243, 272
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 42, 212, 317
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 227, 243, 272
BseGI GGATG 5 cut(s) 67, 239, 280, 295, 337
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 109
BseNI ACTGG 3 cut(s) 42, 212, 317
BseRI GAGGAG 2 cut(s) 31, 213
BseSI GKGCMC 2 cut(s) 210, 279
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 128, 245
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 3 cut(s) 79, 207, 276
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 50, 299
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 50, 299
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 210, 279
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 5 cut(s) 126, 167, 176, 243, 245
BspANI GGCC 1 cut(s) 157
BspFNI CGCG 2 cut(s) 128, 245
BspLI GGNNCC 3 cut(s) 81, 209, 278
BspT107I GGYRCC 3 cut(s) 79, 207, 276
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 3 cut(s) 42, 212, 317
BssECI CCNNGG 3 cut(s) 227, 243, 272
BssMI GATC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 5 cut(s) 67, 239, 280, 295, 337
BstFNI CGCG 2 cut(s) 128, 245
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 119, 163, 205
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 226, 271
BstSLI GKGCMC 2 cut(s) 210, 279
BstUI CGCG 2 cut(s) 128, 245
BstV1I GCAGC 1 cut(s) 134
BsuI GTATCC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 5 cut(s) 67, 239, 280, 295, 337
BtsIMutI CAGTG 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 1 cut(s) 32
CviJI RGCY 3 cut(s) 125, 157, 166
CviKI_1 RGCY 3 cut(s) 125, 157, 166
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 35
FaqI GGGAC 2 cut(s) 50, 299
FatI CATG 1 cut(s) 31
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 2 cut(s) 171, 234
Fnu4HI GCNGC 3 cut(s) 123, 126, 167
FokI GGATG 5 cut(s) 74, 226, 267, 282, 324
Fsp4HI GCNGC 3 cut(s) 123, 126, 167
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 123, 126, 167
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 122, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 163, 205
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 197
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 2 cut(s) 194, 226
LpnPI CCDG 9 cut(s) 55, 62, 75, 225, 240, 258, 270, 285, 330
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 248
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 210, 279
MluCI AATT 1 cut(s) 84
MnlI CCTC 5 cut(s) 9, 168, 234, 279, 309
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 228, 273
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 2 cut(s) 128, 245
MwoI GCNNNNNNNGC 3 cut(s) 119, 163, 205
NciI CCSGG 1 cut(s) 228
NdeI CATATG 2 cut(s) 171, 234
NdeII GATC 1 cut(s) 20
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 3 cut(s) 81, 209, 278
PceI AGGCCT 1 cut(s) 157
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 124, 127, 168
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 81, 209, 278
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 218
SacII CCGCGG 1 cut(s) 246
SatI GCNGC 3 cut(s) 123, 126, 167
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 228, 273
SduI GDGCHC 2 cut(s) 210, 279
SfaNI GCATC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 1 cut(s) 134
Sse9I AATT 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 5 cut(s) 126, 167, 176, 243, 245
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 226, 271
TaqI TCGA 2 cut(s) 7, 23
TasI AATT 1 cut(s) 84
TauI GCSGC 2 cut(s) 128, 169
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.