Rorug06G0464300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014455
Physical Location & Seq
Forward (+)
58912025 .. 58915491
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0464300.1

Sequence Viewer

Length: 1230 bp
ATGGCTTCTCTGGAGTCGGAGGCCGGCTCTGTACGGACCGCCGAATCTTCCAATGAAATCAAACAGAGAGCCAGAAAAAATAGGACCAACAAGAAGAAGACCAAAAACGGTGCGTTTCGTTACCTCCCCAAATTTCGGTGCTTTAGTTTAAAATCGGAAACGACTGACGGTCACGGGAAGGGGAAGGGGAGTTTCGATATGGAGGTGGAGGATGAAGCGGACCCGACCCACCTTGTCATAATGGTTAATGGGCTTATAGGCAGTGCCGAGGATTGGAGGTATGCAGCGACCCAGTTTGTGAAGAGATACCCAGAAGATGTTGTTGTGCATTGCAGTGAATGTAATTGTTCAACGTTGACATTTGATGGTGTGGATGTAATGGGGGAGAGATTAGCACAAGAGGTTAAATCTGTAATAAAACGCCACCAAAGTCTTCAGAAGATCTCGTTTGTTGGTCACTCATTAGGTGGCCTTATAGCAAGGTATGCCATTGGCAGGCTTTATGAACGCCACACAACAAGGGAACTTTCTCAGGAAAATGGAGAATGTAGGGGCAATGGATTTGAGGATCCATCGCTGGAACAGAAAGCGAAAAGCAAAATTGCTGGGCTGGAGCCCGTGAATTTTATAACGTCTGCAACTCCGCACCTCGGTTCATGGGGGCATAAACAGGTTCCAGTGTTTTGTGGCTTTCAAATCCTTGAAAAAGCAGCAGCTCGTACTTCATGGTGTTTAGGTAGAACTGGAAGACATCTGTTTTTAACTGATAGGGATAAAGGAAAACCTCCCCTTTTACTTCAGATGGTTTATGATTCTGAAGATCTTAAATTCTTATCTGCATTGAAGTCCTTCAGGCGTCATGTTGCCTATGCAAATGCTCATTATGATCACCTCGTGGGATGGAGTACGTCTTCTATACGTCCTAAGAAGGAGCTGCCAAAGCTTAAACATTTATCCAGAGACAACAAATATCCACATATTGTAAATGAGGACATGATAAACACCGCTAGTACTCAAGAAGAAGTTGCTTTGGAGGACGACGTGAATATTGACTTCGAAGAGGAAATGATCAGAGGTTTGACCAAGGTGAGCTGGGAAAGGATTGATGTAAGTTTTAGTGGAAGTAGACAAAAGTACCTTGCACATAATACCATTCAGGTGAAAACTTATTGTATACATTCTGATGGAGCTGATGTGATCCAACACATGGTGGACAATTTTCGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

409

Amino Acids

46.27

Weight (kDa)

8.48

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 74 - 303 2.7e-65 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 1207
AccI GTMKAC 2 cut(s) 1126, 1174
AciI CCGC 4 cut(s) 39, 218, 644, 1005
AclI AACGTT 1 cut(s) 353
AclWI GGATC 3 cut(s) 563, 576, 1192
AcsI RAATTY 3 cut(s) 131, 622, 827
AcuI CTGAAG 4 cut(s) 419, 782, 835, 837
AcyI GRCGYC 1 cut(s) 856
AdeI CACNNNGTG 2 cut(s) 895, 1210
AfaI GTAC 5 cut(s) 33, 721, 907, 1012, 1136
AfiI CCNNNNNNNGG 5 cut(s) 135, 273, 495, 650, 1207
AgsI TTSAA 4 cut(s) 351, 695, 704, 844
AhdI GACNNNNNGTC 1 cut(s) 168
AjiI CACGTC 1 cut(s) 1042
AluBI AGCT 5 cut(s) 716, 934, 943, 1092, 1190
AluI AGCT 5 cut(s) 716, 934, 943, 1092, 1190
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 3 cut(s) 563, 576, 1192
AoxI GGCC 2 cut(s) 21, 469
ApeKI GCWGC 4 cut(s) 284, 710, 713, 934
ApoI RAATTY 3 cut(s) 131, 622, 827
Asp700I GAANNNNTTC 1 cut(s) 848
AspS9I GGNCC 3 cut(s) 36, 84, 220
AsuHPI GGTGA 3 cut(s) 881, 1099, 1171
AsuII TTCGAA 1 cut(s) 1056
AvaII GGWCC 3 cut(s) 36, 84, 220
BaeI ACNNNNGTAYC 2 cut(s) 1118, 1151
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 4 cut(s) 104, 425, 754, 903
BbvI GCAGC 4 cut(s) 296, 722, 725, 921
BccI CCATC 5 cut(s) 359, 580, 796, 894, 1178
BclI TGATCA 2 cut(s) 886, 1068
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 1 cut(s) 1008
BglII AGATCT 2 cut(s) 441, 820
BisI GCNGC 4 cut(s) 285, 711, 714, 935
BlsI GCNGC 4 cut(s) 286, 712, 715, 936
BmcAI AGTACT 1 cut(s) 1012
Bme18I GGWCC 3 cut(s) 36, 84, 220
BmeRI GACNNNNNGTC 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 1042
BmgT120I GGNCC 3 cut(s) 36, 84, 220
BmiI GGNNCC 4 cut(s) 222, 570, 615, 675
BmrI ACTGGG 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 4 cut(s) 104, 425, 754, 903
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 2 cut(s) 32, 632
Bpu14I TTCGAA 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 3 cut(s) 267, 649, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 273, 495, 650, 1207
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 3 cut(s) 292, 677, 748
Bse3DI GCAATG 2 cut(s) 328, 562
BseDI CCNNGG 3 cut(s) 267, 649, 1083
BseGI GGATG 3 cut(s) 217, 379, 905
BseLI CCNNNNNNNGG 5 cut(s) 135, 273, 495, 650, 1207
BseMI GCAATG 2 cut(s) 328, 562
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 292, 677, 748
BseXI GCAGC 4 cut(s) 296, 722, 725, 921
BseYI CCCAGC 2 cut(s) 605, 1092
BshFI GGCC 2 cut(s) 23, 471
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 5 cut(s) 135, 273, 495, 650, 1207
BsmAI GTCTC 1 cut(s) 954
BsnI GGCC 2 cut(s) 23, 471
Bsp119I TTCGAA 1 cut(s) 1056
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BspACI CCGC 4 cut(s) 39, 218, 644, 1005
BspANI GGCC 2 cut(s) 23, 471
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 222, 570, 615, 675
BspPI GGATC 3 cut(s) 563, 576, 1192
BspT104I TTCGAA 1 cut(s) 1056
BsrDI GCAATG 2 cut(s) 328, 562
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 3 cut(s) 292, 677, 748
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 267, 649, 1083
BssMI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BssNAI GTATAC 1 cut(s) 1175
BssNI GRCGYC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 1 cut(s) 1083
Bst1107I GTATAC 1 cut(s) 1175
Bst2BI CACGAG 1 cut(s) 893
Bst4CI ACNGT 2 cut(s) 110, 170
Bst6I CTCTTC 2 cut(s) 296, 1053
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 1056
BstC8I GCNNGC 2 cut(s) 25, 497
BstDEI CTNAG 2 cut(s) 531, 924
BstF5I GGATG 3 cut(s) 217, 379, 905
BstKTI GATC 6 cut(s) 444, 571, 823, 889, 1071, 1200
BstMAI GTCTC 1 cut(s) 954
BstMBI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 485, 940
BstV1I GCAGC 4 cut(s) 296, 722, 725, 921
BstV2I GAAGAC 4 cut(s) 104, 425, 754, 903
BstX2I RGATCY 3 cut(s) 441, 568, 820
BstYI RGATCY 3 cut(s) 441, 568, 820
BstZ17I GTATAC 1 cut(s) 1175
BsuRI GGCC 2 cut(s) 23, 471
BtgZI GCGATG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 1042
BtsCI GGATG 3 cut(s) 217, 379, 905
BtsI GCAGTG 2 cut(s) 268, 340
BtsIMutI CAGTG 3 cut(s) 268, 340, 684
Cac8I GCNNGC 2 cut(s) 25, 497
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 36, 84, 220
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 845
Csp6I GTAC 5 cut(s) 32, 720, 906, 1011, 1135
CspI CGGWCCG 1 cut(s) 36
CviAII CATG 5 cut(s) 657, 726, 860, 994, 1207
CviQI GTAC 5 cut(s) 32, 720, 906, 1011, 1135
DdeI CTNAG 2 cut(s) 531, 924
DpnI GATC 6 cut(s) 443, 570, 822, 888, 1070, 1199
DpnII GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
DraI TTTAAA 1 cut(s) 150
DraIII CACNNNGTG 2 cut(s) 895, 1210
DriI GACNNNNNGTC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 296, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 168
EarI CTCTTC 2 cut(s) 296, 1053
Eco130I CCWWGG 1 cut(s) 1083
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 36, 84, 220
Eco57I CTGAAG 4 cut(s) 419, 782, 835, 837
EcoT14I CCWWGG 1 cut(s) 1083
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 5 cut(s) 660, 729, 863, 997, 1210
FatI CATG 5 cut(s) 656, 725, 859, 993, 1206
FbaI TGATCA 2 cut(s) 886, 1068
FblI GTMKAC 2 cut(s) 1126, 1174
Fnu4HI GCNGC 4 cut(s) 285, 711, 714, 935
FokI GGATG 3 cut(s) 224, 386, 912
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 4 cut(s) 285, 711, 714, 935
FspBI CTAG 1 cut(s) 1008
GluI GCNGC 4 cut(s) 285, 711, 714, 935
GsaI CCCAGC 2 cut(s) 609, 1096
GsuI CTGGAG 2 cut(s) 32, 632
HaeIII GGCC 2 cut(s) 23, 471
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 845
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 5 cut(s) 660, 729, 863, 997, 1210
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 941
HinfI GANTC 3 cut(s) 14, 44, 812
HpaII CCGG 1 cut(s) 24
HphI GGTGA 3 cut(s) 881, 1099, 1171
Hpy166II GTNNAC 4 cut(s) 357, 1127, 1175, 1213
Hpy188I TCNGA 7 cut(s) 19, 157, 438, 801, 817, 1073, 1183
Hpy188III TCNNGA 4 cut(s) 11, 533, 957, 1016
Hpy8I GTNNAC 4 cut(s) 357, 1127, 1175, 1213
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 4 cut(s) 172, 178, 859, 922
HpyCH4III ACNGT 2 cut(s) 110, 170
HpyCH4IV ACGT 5 cut(s) 353, 632, 908, 919, 1041
HpyCH4V TGCA 7 cut(s) 284, 328, 333, 638, 839, 872, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 940
HpyF3I CTNAG 2 cut(s) 531, 924
HpySE526I ACGT 5 cut(s) 353, 632, 908, 919, 1041
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 5 cut(s) 660, 729, 863, 997, 1210
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Ksp22I TGATCA 2 cut(s) 886, 1068
Kzo9I GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
LmnI GCTCC 3 cut(s) 613, 931, 1187
Lsp1109I GCAGC 4 cut(s) 296, 722, 725, 921
MaeI CTAG 1 cut(s) 1008
MaeII ACGT 5 cut(s) 353, 632, 908, 919, 1041
MaeIII GTNAC 3 cut(s) 119, 170, 455
MalI GATC 6 cut(s) 443, 570, 822, 888, 1070, 1199
MboI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
MflI RGATCY 3 cut(s) 441, 568, 820
MhlI GDGCHC 1 cut(s) 618
MluCI AATT 6 cut(s) 131, 343, 600, 622, 827, 1216
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 1225
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 6 cut(s) 149, 246, 405, 761, 825, 945
MslI CAYNNNNRTG 3 cut(s) 333, 1157, 1182
MspI CCGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 485, 940
NaeI GCCGGC 1 cut(s) 25
NdeII GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 5 cut(s) 660, 729, 863, 997, 1210
NlaIV GGNNCC 4 cut(s) 222, 570, 615, 675
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 170, 455
NspV TTCGAA 1 cut(s) 1056
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 2 cut(s) 44, 812
PflMI CCANNNNNTGG 1 cut(s) 1207
PkrI GCNGC 4 cut(s) 286, 712, 715, 936
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 353
PspFI CCCAGC 2 cut(s) 605, 1092
PspN4I GGNNCC 4 cut(s) 222, 570, 615, 675
PspPI GGNCC 3 cut(s) 36, 84, 220
PsuI RGATCY 3 cut(s) 441, 568, 820
RsaI GTAC 5 cut(s) 33, 721, 907, 1012, 1136
RsaNI GTAC 5 cut(s) 32, 720, 906, 1011, 1135
RseI CAYNNNNRTG 3 cut(s) 333, 1157, 1182
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SaqAI TTAA 6 cut(s) 149, 246, 405, 761, 825, 945
SatI GCNGC 4 cut(s) 285, 711, 714, 935
Sau3AI GATC 6 cut(s) 441, 568, 820, 886, 1068, 1197
Sau96I GGNCC 3 cut(s) 36, 84, 220
ScaI AGTACT 1 cut(s) 1012
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 1056
SinI GGWCC 3 cut(s) 36, 84, 220
SmiMI CAYNNNNRTG 3 cut(s) 333, 1157, 1182
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
Sse9I AATT 6 cut(s) 131, 343, 600, 622, 827, 1216
SsiI CCGC 4 cut(s) 39, 218, 644, 1005
SspI AATATT 1 cut(s) 1048
SspMI CTAG 1 cut(s) 1008
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 110, 170
TaiI ACGT 5 cut(s) 356, 635, 911, 922, 1044
TaqI TCGA 2 cut(s) 195, 1056
TasI AATT 6 cut(s) 131, 343, 600, 622, 827, 1216
TatI WGTACW 1 cut(s) 1010
TfiI GAWTC 2 cut(s) 44, 812
Tru1I TTAA 6 cut(s) 149, 246, 405, 761, 825, 945
Tru9I TTAA 6 cut(s) 149, 246, 405, 761, 825, 945
TscAI CASTG 3 cut(s) 268, 340, 684
TseFI GTSAC 2 cut(s) 170, 455
TseI GCWGC 4 cut(s) 284, 710, 713, 934
Tsp45I GTSAC 2 cut(s) 170, 455
TspDTI ATGAA 5 cut(s) 69, 228, 519, 645, 714
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 3 cut(s) 268, 340, 684
Van91I CCANNNNNTGG 1 cut(s) 1207
VpaK11BI GGWCC 3 cut(s) 36, 84, 220
XapI RAATTY 3 cut(s) 131, 622, 827
XmiI GTMKAC 2 cut(s) 1126, 1174
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 1 cut(s) 1008
ZrmI AGTACT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.