Rmu_ssc0000289.1_g000025
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0014455
Physical Location & Seq
Reverse (-)
128884 .. 130856
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000025.1.cds

Sequence Viewer

Length: 1317 bp
atgtcgagctggacccgagaagaagacaaggccttcgagaacgcaatcgctttgcattggatcgaggacgatgaggaatcatcgtgggacaagatagcgtctttggttccgagcaagagcatggaggagttgaaacgacactaccaaatgctagtggaagatgtgagtgcaattgtgtcagggaacattccggttcctaattatggaggggaagaagctaccacatcggtgagcaaggagagcagtagtgctcgggcttcttcttctggggtttcagataagagattgagtagtggccatggaaatggaggtgggttttcgcctttgggtcatgactcgtctggtcatggaagtaaaggagggtccaggtcagaccaagaaagaaagaaagggattccatggacagaagaagagcacagctggacccgagaagaagacaaggccttcgagaacgcaatcgctttgcattggatcgaggacgatgaggaatcatcgtgggacaagatagcgtctttggttccgagcaagagcatggaggagttgaaacgacactaccaaatgctagtggaagatgtgagtgcaattgtgtcagggaacattccggttcctaattatggaggggaagaagctaccacatcggtgagcaaggagagcagtagtgctcgggcttcttcttctggggtttcagataagagattgagtagtggccatggaaatggaggtgggttttctcctttgggtcatgactcgtctggtcatggaagtaaaggagggtccaggtcagaccaagaaagaaagaaagggattccatggacagaagaagagcacaggttatttctacttggtcttgacaagtttggcaagggagattggaggagcatttcaaggaactttgtcatttccaggacccctacacaagtggctagccatgcgcagaagtacttcattcgcttgaactcgatgaatcgggacaggaggagatcgagtatccatgacattaccagtgtcaacaatggtggggatgtcccatctcatcaggcaccaattacagggcaacagagcaatgcttatgccccaagtgcagccgcgataggaccaccatcggtgaagcataggcctcatcagccgcatatggcgggtttaggaatgtatggagcgccgatggggcacccagtttctgctcctccggggcatatggcatccgcggttggcactcctgttatgcttcctccagggcaccatccccaccacgcccatcctcccccgtatgttgtcccagttgcttacccaatggcacatccgacaatgcaccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

438

Amino Acids

47.31

Weight (kDa)

6.31

Isoelectric Point (pI)

61.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 933
AccB1I GGYRCC 3 cut(s) 1039, 1167, 1236
AccII CGCG 2 cut(s) 1088, 1205
AciI CCGC 5 cut(s) 1086, 1127, 1136, 1203, 1205
AclWI GGATC 2 cut(s) 68, 479
AcoI YGGCCR 2 cut(s) 295, 706
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 3 cut(s) 203, 614, 1049
AgsI TTSAA 4 cut(s) 133, 544, 885, 955
AjnI CCWGG 4 cut(s) 365, 776, 902, 1231
AleI CACNNNNGTG 2 cut(s) 227, 638
AluBI AGCT 4 cut(s) 9, 218, 420, 629
AluI AGCT 4 cut(s) 9, 218, 420, 629
Alw21I GWGCWC 4 cut(s) 253, 417, 664, 828
AlwI GGATC 2 cut(s) 68, 479
AlwNI CAGNNNCTG 1 cut(s) 1178
Ama87I CYCGRG 4 cut(s) 15, 252, 426, 663
AoxI GGCC 5 cut(s) 30, 295, 441, 706, 1115
ApeKI GCWGC 1 cut(s) 1082
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 428, 460
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 2 cut(s) 934, 1159
AspS9I GGNCC 6 cut(s) 12, 363, 423, 774, 906, 1094
AsuC2I CCSGG 1 cut(s) 1188
AsuHPI GGTGA 3 cut(s) 241, 652, 1117
AsuNHI GCTAGC 1 cut(s) 923
AvaI CYCGRG 4 cut(s) 15, 252, 426, 663
AvaII GGWCC 6 cut(s) 12, 363, 423, 774, 906, 1094
BaeGI GKGCMC 2 cut(s) 1170, 1239
BalI TGGCCA 2 cut(s) 297, 708
BanI GGYRCC 3 cut(s) 1039, 1167, 1236
BbsI GAAGAC 2 cut(s) 30, 441
Bbv12I GWGCWC 4 cut(s) 253, 417, 664, 828
BbvI GCAGC 1 cut(s) 1094
BccI CCATC 5 cut(s) 1036, 1108, 1156, 1248, 1263
BciT130I CCWGG 4 cut(s) 367, 778, 904, 1233
BciVI GTATCC 1 cut(s) 998
BcnI CCSGG 1 cut(s) 1188
BfaI CTAG 3 cut(s) 152, 563, 924
BfoI RGCGCY 1 cut(s) 1160
BfuI GTATCC 1 cut(s) 998
BglI GCCNNNNNGGC 1 cut(s) 1165
BisI GCNGC 3 cut(s) 1083, 1086, 1127
BlsI GCNGC 3 cut(s) 1084, 1087, 1128
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 5 cut(s) 367, 778, 904, 1188, 1233
Bme18I GGWCC 6 cut(s) 12, 363, 423, 774, 906, 1094
BmeT110I CYCGRG 4 cut(s) 15, 252, 426, 663
BmgT120I GGNCC 6 cut(s) 12, 363, 423, 774, 906, 1094
BmrFI CCNGG 5 cut(s) 367, 778, 904, 1188, 1233
BmrI ACTGGG 2 cut(s) 1166, 1271
BmsI GCATC 1 cut(s) 1208
BmtI GCTAGC 1 cut(s) 927
BmuI ACTGGG 2 cut(s) 1166, 1271
BpiI GAAGAC 2 cut(s) 30, 441
BpmI CTGGAG 1 cut(s) 1215
BpuMI CCSGG 1 cut(s) 1188
BsaJI CCNNGG 7 cut(s) 298, 398, 709, 809, 1187, 1203, 1232
BsaWI WCCGGW 2 cut(s) 190, 601
BsaXI ACNNNNNCTCC 2 cut(s) 970, 1000
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 614, 1049
Bse1I ACTGG 3 cut(s) 1002, 1172, 1277
Bse3DI GCAATG 1 cut(s) 1069
BseBI CCWGG 4 cut(s) 367, 778, 904, 1233
BseDI CCNNGG 7 cut(s) 298, 398, 709, 809, 1187, 1203, 1232
BseGI GGATG 5 cut(s) 1027, 1199, 1240, 1255, 1297
BseLI CCNNNNNNNGG 3 cut(s) 203, 614, 1049
BseMI GCAATG 1 cut(s) 1069
BseNI ACTGG 3 cut(s) 1002, 1172, 1277
BseRI GAGGAG 5 cut(s) 140, 551, 889, 991, 1173
BseSI GKGCMC 2 cut(s) 1170, 1239
BseXI GCAGC 1 cut(s) 1094
BsgI GTGCAG 1 cut(s) 1101
Bsh1236I CGCG 2 cut(s) 1088, 1205
BshFI GGCC 5 cut(s) 32, 297, 443, 708, 1117
BshNI GGYRCC 3 cut(s) 1039, 1167, 1236
BsiHKAI GWGCWC 4 cut(s) 253, 417, 664, 828
BsiHKCI CYCGRG 4 cut(s) 15, 252, 426, 663
BsiSI CCGG 3 cut(s) 191, 602, 1187
BslFI GGGAC 5 cut(s) 101, 512, 983, 1010, 1259
BslI CCNNNNNNNGG 3 cut(s) 203, 614, 1049
BsmFI GGGAC 5 cut(s) 101, 512, 983, 1010, 1259
BsnI GGCC 5 cut(s) 32, 297, 443, 708, 1117
BsoBI CYCGRG 4 cut(s) 15, 252, 426, 663
Bsp1286I GDGCHC 6 cut(s) 253, 417, 664, 828, 1170, 1239
Bsp143I GATC 3 cut(s) 60, 471, 980
Bsp19I CCATGG 4 cut(s) 298, 398, 709, 809
BspACI CCGC 5 cut(s) 1086, 1127, 1136, 1203, 1205
BspANI GGCC 5 cut(s) 32, 297, 443, 708, 1117
BspFNI CGCG 2 cut(s) 1088, 1205
BspHI TCATGA 2 cut(s) 331, 742
BspOI GCTAGC 1 cut(s) 927
BspPI GGATC 2 cut(s) 68, 479
BspQI GCTCTTC 2 cut(s) 405, 816
BspT107I GGYRCC 3 cut(s) 1039, 1167, 1236
BsrDI GCAATG 1 cut(s) 1069
BsrI ACTGG 3 cut(s) 1002, 1172, 1277
BssECI CCNNGG 7 cut(s) 298, 398, 709, 809, 1187, 1203, 1232
BssMI GATC 3 cut(s) 60, 471, 980
BssT1I CCWWGG 4 cut(s) 298, 398, 709, 809
Bst2UI CCWGG 4 cut(s) 367, 778, 904, 1233
Bst6I CTCTTC 2 cut(s) 405, 816
BstC8I GCNNGC 1 cut(s) 925
BstDSI CCRYGG 5 cut(s) 298, 398, 709, 809, 1203
BstF5I GGATG 5 cut(s) 1027, 1199, 1240, 1255, 1297
BstFNI CGCG 2 cut(s) 1088, 1205
BstH2I RGCGCY 1 cut(s) 1160
BstHHI GCGC 2 cut(s) 934, 1159
BstKTI GATC 3 cut(s) 63, 474, 983
BstMBI GATC 3 cut(s) 60, 471, 980
BstMWI GCNNNNNNNGC 6 cut(s) 240, 651, 929, 1079, 1123, 1165
BstNI CCWGG 4 cut(s) 367, 778, 904, 1233
BstSCI CCNGG 5 cut(s) 365, 776, 902, 1186, 1231
BstSLI GKGCMC 2 cut(s) 1170, 1239
BstUI CGCG 2 cut(s) 1088, 1205
BstV1I GCAGC 1 cut(s) 1094
BstV2I GAAGAC 2 cut(s) 30, 441
BstXI CCANNNNNNTGG 2 cut(s) 305, 716
BsuI GTATCC 1 cut(s) 998
BsuRI GGCC 5 cut(s) 32, 297, 443, 708, 1117
BtgI CCRYGG 5 cut(s) 298, 398, 709, 809, 1203
BtsCI GGATG 5 cut(s) 1027, 1199, 1240, 1255, 1297
BtsIMutI CAGTG 1 cut(s) 1009
Cac8I GCNNGC 1 cut(s) 925
CaiI CAGNNNCTG 1 cut(s) 1178
CciI TCATGA 2 cut(s) 331, 742
CfoI GCGC 2 cut(s) 934, 1159
Cfr13I GGNCC 6 cut(s) 12, 363, 423, 774, 906, 1094
Cfr42I CCGCGG 1 cut(s) 1206
CseI GACGC 2 cut(s) 87, 498
Csp6I GTAC 1 cut(s) 940
CspCI CAANNNNNGTGG 2 cut(s) 997, 1032
CviQI GTAC 1 cut(s) 940
DpnI GATC 3 cut(s) 62, 473, 982
DpnII GATC 3 cut(s) 60, 471, 980
EaeI YGGCCR 2 cut(s) 295, 706
Eam1104I CTCTTC 2 cut(s) 405, 816
EarI CTCTTC 2 cut(s) 405, 816
Eco130I CCWWGG 4 cut(s) 298, 398, 709, 809
Eco147I AGGCCT 3 cut(s) 32, 443, 1117
Eco47I GGWCC 6 cut(s) 12, 363, 423, 774, 906, 1094
Eco88I CYCGRG 4 cut(s) 15, 252, 426, 663
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 4 cut(s) 365, 776, 902, 1231
EcoT14I CCWWGG 4 cut(s) 298, 398, 709, 809
ErhI CCWWGG 4 cut(s) 298, 398, 709, 809
FaqI GGGAC 5 cut(s) 101, 512, 983, 1010, 1259
FauI CCCGC 1 cut(s) 1129
FauNDI CATATG 2 cut(s) 1131, 1194
Fnu4HI GCNGC 3 cut(s) 1083, 1086, 1127
FokI GGATG 5 cut(s) 1034, 1186, 1227, 1242, 1284
Fsp4HI GCNGC 3 cut(s) 1083, 1086, 1127
FspBI CTAG 3 cut(s) 152, 563, 924
FspI TGCGCA 1 cut(s) 933
GlaI GCGC 2 cut(s) 933, 1158
GluI GCNGC 3 cut(s) 1083, 1086, 1127
GsuI CTGGAG 1 cut(s) 1215
HaeII RGCGCY 1 cut(s) 1160
HaeIII GGCC 5 cut(s) 32, 297, 443, 708, 1117
HapII CCGG 3 cut(s) 191, 602, 1187
HgaI GACGC 2 cut(s) 87, 498
HhaI GCGC 2 cut(s) 934, 1159
Hin6I GCGC 2 cut(s) 932, 1157
HinP1I GCGC 2 cut(s) 932, 1157
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HinfI GANTC 7 cut(s) 77, 335, 394, 488, 746, 805, 964
HpaII CCGG 3 cut(s) 191, 602, 1187
HphI GGTGA 3 cut(s) 241, 652, 1117
Hpy166II GTNNAC 1 cut(s) 1009
Hpy188I TCNGA 7 cut(s) 111, 277, 373, 522, 688, 784, 1302
Hpy188III TCNNGA 6 cut(s) 37, 332, 448, 743, 848, 968
Hpy8I GTNNAC 1 cut(s) 1009
HpyAV CCTTC 2 cut(s) 43, 454
HpyCH4V TGCA 6 cut(s) 55, 170, 466, 581, 1082, 1309
HpyF10VI GCNNNNNNNGC 6 cut(s) 240, 651, 929, 1079, 1123, 1165
HspAI GCGC 2 cut(s) 932, 1157
KspI CCGCGG 1 cut(s) 1206
Kzo9I GATC 3 cut(s) 60, 471, 980
LguI GCTCTTC 2 cut(s) 405, 816
LmnI GCTCC 3 cut(s) 876, 1154, 1186
Lsp1109I GCAGC 1 cut(s) 1094
LweI GCATC 1 cut(s) 1208
MaeI CTAG 3 cut(s) 152, 563, 924
MalI GATC 3 cut(s) 62, 473, 982
MboI GATC 3 cut(s) 60, 471, 980
MfeI CAATTG 2 cut(s) 171, 582
MhlI GDGCHC 6 cut(s) 253, 417, 664, 828, 1170, 1239
MlsI TGGCCA 2 cut(s) 297, 708
MluCI AATT 5 cut(s) 171, 199, 582, 610, 1044
MluNI TGGCCA 2 cut(s) 297, 708
MlyI GAGTC 2 cut(s) 329, 740
Mox20I TGGCCA 2 cut(s) 297, 708
MroXI GAANNNNTTC 1 cut(s) 941
MscI TGGCCA 2 cut(s) 297, 708
MslI CAYNNNNRTG 4 cut(s) 227, 303, 638, 714
Msp20I TGGCCA 2 cut(s) 297, 708
MspA1I CMGCKG 2 cut(s) 420, 1205
MspI CCGG 3 cut(s) 191, 602, 1187
MspR9I CCNGG 5 cut(s) 367, 778, 904, 1188, 1233
MunI CAATTG 2 cut(s) 171, 582
MvaI CCWGG 4 cut(s) 367, 778, 904, 1233
MvnI CGCG 2 cut(s) 1088, 1205
MwoI GCNNNNNNNGC 6 cut(s) 240, 651, 929, 1079, 1123, 1165
NciI CCSGG 1 cut(s) 1188
NcoI CCATGG 4 cut(s) 298, 398, 709, 809
NdeI CATATG 2 cut(s) 1131, 1194
NdeII GATC 3 cut(s) 60, 471, 980
NheI GCTAGC 1 cut(s) 923
NsbI TGCGCA 1 cut(s) 933
OliI CACNNNNGTG 2 cut(s) 227, 638
PagI TCATGA 2 cut(s) 331, 742
PceI AGGCCT 3 cut(s) 32, 443, 1117
PciSI GCTCTTC 2 cut(s) 405, 816
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 5 cut(s) 77, 394, 488, 805, 964
PfoI TCCNGGA 1 cut(s) 902
PkrI GCNGC 3 cut(s) 1084, 1087, 1128
PleI GAGTC 2 cut(s) 329, 740
PpsI GAGTC 2 cut(s) 329, 740
PpuMI RGGWCCY 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 4 cut(s) 365, 776, 902, 1231
PspGI CCWGG 4 cut(s) 365, 776, 902, 1231
PspPI GGNCC 6 cut(s) 12, 363, 423, 774, 906, 1094
PspPPI RGGWCCY 1 cut(s) 906
PstNI CAGNNNCTG 1 cut(s) 1178
PvuII CAGCTG 1 cut(s) 420
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
RseI CAYNNNNRTG 4 cut(s) 227, 303, 638, 714
SacII CCGCGG 1 cut(s) 1206
SapI GCTCTTC 2 cut(s) 405, 816
SatI GCNGC 3 cut(s) 1083, 1086, 1127
Sau3AI GATC 3 cut(s) 60, 471, 980
Sau96I GGNCC 6 cut(s) 12, 363, 423, 774, 906, 1094
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 2 cut(s) 329, 740
ScrFI CCNGG 5 cut(s) 367, 778, 904, 1188, 1233
SduI GDGCHC 6 cut(s) 253, 417, 664, 828, 1170, 1239
SetI ASST 9 cut(s) 11, 220, 313, 371, 422, 631, 724, 782, 833
SfaNI GCATC 1 cut(s) 1208
Sfr303I CCGCGG 1 cut(s) 1206
SgrBI CCGCGG 1 cut(s) 1206
SinI GGWCC 6 cut(s) 12, 363, 423, 774, 906, 1094
SmiMI CAYNNNNRTG 4 cut(s) 227, 303, 638, 714
Sse9I AATT 5 cut(s) 171, 199, 582, 610, 1044
SseBI AGGCCT 3 cut(s) 32, 443, 1117
SsiI CCGC 5 cut(s) 1086, 1127, 1136, 1203, 1205
SspMI CTAG 3 cut(s) 152, 563, 924
StuI AGGCCT 3 cut(s) 32, 443, 1117
StyD4I CCNGG 5 cut(s) 365, 776, 902, 1186, 1231
StyI CCWWGG 4 cut(s) 298, 398, 709, 809
TaqI TCGA 7 cut(s) 5, 36, 63, 447, 474, 959, 983
TasI AATT 5 cut(s) 171, 199, 582, 610, 1044
TatI WGTACW 1 cut(s) 939
TauI GCSGC 2 cut(s) 1088, 1129
TfiI GAWTC 5 cut(s) 77, 394, 488, 805, 964
TscAI CASTG 1 cut(s) 1009
TseI GCWGC 1 cut(s) 1082
TspDTI ATGAA 2 cut(s) 934, 977
TspRI CASTG 1 cut(s) 1009
VpaK11BI GGWCC 6 cut(s) 12, 363, 423, 774, 906, 1094
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 3 cut(s) 152, 563, 924
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.