Prupe.5G217700_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014455
Physical Location & Seq
Forward (+)
17062368 .. 17064457
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G217700.1

Sequence Viewer

Length: 924 bp
ATGTCAAGTGCCAGTGTTTGGAACAAAGAGGAAGACAAAGCTTTTGAGAACGCAATTGCCATGCATTGGATCGATGAAGAATCAGAAGAGCAGTGGGAGAAGATTGCTGAATTGGTTCCAAGCAAGAGCATGGAAGAGTTGAAGCAACACTACCAAATGCTAGTGGATGATGTAAGTGCAATTGAGGCTGGACATACACCTCTGCCTAACTATGCAGCAGCAGAGGAAGCTACCTCATCCAGTAAGGACACTGCTGCTCGTGCTTCTTCTGGAGCTTCTGCTTCGGATAAGAGATTGAATTGTGGTCATGGAGGTGGGTTTTCAGCCTTGGCTCATGACACGTCCGGCCATGGAGGCAAAGGAGGATCAAGGTCAGACCAAGAGAGAAAGAAGGGGATTCCATGGACTGAAGACGAACACAGGTTATTTCTACTTGGTCTTGAGAAATTTGGCAAGGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCCAGAACTCCAACCCAAGTGGCCAGCCACGCACAAAAATACTTCATCCGCTTGAACTCCATGAACAGAGACAGGAGGAGATCAAGCATCCATGACATTACCAGTGTGAACAATGGAGATGTGTCATCTCATCAGCCACCAATTACAGGGCAACAGACCAATACATATGCGCCAAGTGCCGCCGCGGCCGGTGCCACCACCATAGGAGTAGGACCACAGTCGGTGAAGCACAGGGCTCACCAGCCACACATGGCAGGTTTAGGAATGTATGGAGCACCAATGGGGCACCCAGTTTCAGCTCCTCCAGGGCATCATATGGGATCCGCTGTGGGCACTCCAGTCATGCTTCCTCCAGGGCACCATCCCCATACACATCCTCCATATGTTGTGCCAGTTGCTTACCCAATGGCACATCCAACAATGCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

33.14

Weight (kDa)

6.74

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 3 cut(s) 683, 777, 849
AccB7I CCANNNNNTGG 2 cut(s) 18, 66
AccII CGCG 1 cut(s) 677
AciI CCGC 5 cut(s) 541, 672, 675, 677, 816
AclWI GGATC 4 cut(s) 77, 373, 807, 820
AcoI YGGCCR 3 cut(s) 346, 513, 678
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 429
AfiI CCNNNNNNNGG 3 cut(s) 18, 66, 638
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 4 cut(s) 142, 298, 477, 547
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 2 cut(s) 796, 844
AluBI AGCT 4 cut(s) 41, 230, 275, 791
AluI AGCT 4 cut(s) 41, 230, 275, 791
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 4 cut(s) 77, 373, 807, 820
AoxI GGCC 3 cut(s) 346, 513, 678
ApeKI GCWGC 3 cut(s) 215, 218, 254
ApoI RAATTY 1 cut(s) 446
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 2 cut(s) 114, 472
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 704
AsuHPI GGTGA 2 cut(s) 722, 727
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 3 cut(s) 780, 827, 852
BalI TGGCCA 1 cut(s) 515
BamHI GGATCC 1 cut(s) 812
BanI GGYRCC 3 cut(s) 683, 777, 849
BanII GRGCYC 1 cut(s) 730
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 39, 417
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 3 cut(s) 227, 230, 241
BccI CCATC 1 cut(s) 861
BciT130I CCWGG 2 cut(s) 798, 846
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 737
BglI GCCNNNNNGGC 2 cut(s) 354, 677
BisI GCNGC 6 cut(s) 216, 219, 255, 672, 675, 678
BlsI GCNGC 6 cut(s) 217, 220, 256, 673, 676, 679
Bme1390I CCNGG 2 cut(s) 798, 846
Bme18I GGWCC 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 5 cut(s) 117, 685, 779, 814, 851
BmrFI CCNGG 2 cut(s) 798, 846
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 2 cut(s) 588, 811
BmuI ACTGGG 1 cut(s) 776
BoxI GACNNNNGTC 1 cut(s) 709
BpiI GAAGAC 2 cut(s) 39, 417
BpmI CTGGAG 4 cut(s) 291, 780, 813, 828
BpuEI CTTGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 6 cut(s) 327, 349, 401, 675, 797, 845
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 66, 638
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 6 cut(s) 12, 240, 594, 782, 830, 884
BseBI CCWGG 2 cut(s) 798, 846
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 6 cut(s) 327, 349, 401, 675, 797, 845
BseGI GGATG 7 cut(s) 172, 236, 537, 579, 853, 865, 904
BseLI CCNNNNNNNGG 3 cut(s) 18, 66, 638
BseNI ACTGG 6 cut(s) 12, 240, 594, 782, 830, 884
BseRI GAGGAG 2 cut(s) 583, 783
BseSI GKGCMC 3 cut(s) 780, 827, 852
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 3 cut(s) 227, 230, 241
Bsh1236I CGCG 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 3 cut(s) 348, 515, 680
BshNI GGYRCC 3 cut(s) 683, 777, 849
BshVI ATCGAT 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 2 cut(s) 345, 681
BslI CCNNNNNNNGG 3 cut(s) 18, 66, 638
BsmAI GTCTC 1 cut(s) 555
BsnI GGCC 3 cut(s) 348, 515, 680
Bsp1286I GDGCHC 5 cut(s) 730, 769, 780, 827, 852
Bsp143I GATC 4 cut(s) 69, 365, 572, 812
Bsp19I CCATGG 2 cut(s) 349, 401
BspACI CCGC 5 cut(s) 541, 672, 675, 677, 816
BspANI GGCC 3 cut(s) 348, 515, 680
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 1 cut(s) 677
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 5 cut(s) 117, 685, 779, 814, 851
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 4 cut(s) 77, 373, 807, 820
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 3 cut(s) 683, 777, 849
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 6 cut(s) 12, 240, 594, 782, 830, 884
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 6 cut(s) 327, 349, 401, 675, 797, 845
BssMI GATC 4 cut(s) 69, 365, 572, 812
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 3 cut(s) 327, 349, 401
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 798, 846
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 2 cut(s) 81, 129
BstC8I GCNNGC 1 cut(s) 517
BstDSI CCRYGG 3 cut(s) 349, 401, 675
BstF5I GGATG 7 cut(s) 172, 236, 537, 579, 853, 865, 904
BstFNI CGCG 1 cut(s) 677
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 4 cut(s) 72, 368, 575, 815
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 4 cut(s) 69, 365, 572, 812
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 8 cut(s) 185, 227, 260, 354, 521, 668, 677, 683
BstNI CCWGG 2 cut(s) 798, 846
BstPAI GACNNNNGTC 1 cut(s) 709
BstSCI CCNGG 2 cut(s) 796, 844
BstSLI GKGCMC 3 cut(s) 780, 827, 852
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 3 cut(s) 227, 230, 241
BstV2I GAAGAC 2 cut(s) 39, 417
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
BstZI CGGCCG 1 cut(s) 678
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 3 cut(s) 348, 515, 680
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 3 cut(s) 349, 401, 675
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 7 cut(s) 172, 236, 537, 579, 853, 865, 904
BtsI GCAGTG 2 cut(s) 98, 249
BtsIMutI CAGTG 4 cut(s) 19, 98, 249, 601
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 517
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 664
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 704
Cfr42I CCGCGG 1 cut(s) 678
ClaI ATCGAT 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
DpnI GATC 4 cut(s) 71, 367, 574, 814
DpnII GATC 4 cut(s) 69, 365, 572, 812
EaeI YGGCCR 3 cut(s) 346, 513, 678
EagI CGGCCG 1 cut(s) 678
Eam1104I CTCTTC 2 cut(s) 81, 129
EarI CTCTTC 2 cut(s) 81, 129
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 3 cut(s) 327, 349, 401
Eco24I GRGCYC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 704
Eco52I CGGCCG 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 796, 844
EcoT14I CCWWGG 3 cut(s) 327, 349, 401
EcoT22I ATGCAT 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 3 cut(s) 327, 349, 401
FauNDI CATATG 3 cut(s) 658, 807, 874
Fnu4HI GCNGC 6 cut(s) 216, 219, 255, 672, 675, 678
FokI GGATG 7 cut(s) 179, 223, 524, 566, 840, 852, 891
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 6 cut(s) 216, 219, 255, 672, 675, 678
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 663
GluI GCNGC 6 cut(s) 216, 219, 255, 672, 675, 678
GsuI CTGGAG 4 cut(s) 291, 780, 813, 828
HaeIII GGCC 3 cut(s) 348, 515, 680
HapII CCGG 2 cut(s) 345, 681
HhaI GCGC 1 cut(s) 664
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 80, 397
HpaII CCGG 2 cut(s) 345, 681
HphI GGTGA 2 cut(s) 722, 727
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 3 cut(s) 85, 286, 376
Hpy188III TCNNGA 4 cut(s) 270, 335, 440, 495
Hpy8I GTNNAC 1 cut(s) 601
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 64, 179, 215, 916
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 227, 260, 354, 521, 668, 677, 683
HpySE526I ACGT 1 cut(s) 341
HspAI GCGC 1 cut(s) 662
KspI CCGCGG 1 cut(s) 678
Kzo9I GATC 4 cut(s) 69, 365, 572, 812
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 3 cut(s) 272, 764, 796
Lsp1109I GCAGC 3 cut(s) 227, 230, 241
LweI GCATC 2 cut(s) 588, 811
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 341
MalI GATC 4 cut(s) 71, 367, 574, 814
MboI GATC 4 cut(s) 69, 365, 572, 812
MboII GAAGA 7 cut(s) 44, 89, 98, 112, 146, 258, 422
MfeI CAATTG 2 cut(s) 54, 180
MflI RGATCY 1 cut(s) 812
MhlI GDGCHC 5 cut(s) 730, 769, 780, 827, 852
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 6 cut(s) 54, 110, 180, 298, 446, 633
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 527
Mox20I TGGCCA 1 cut(s) 515
Mph1103I ATGCAT 1 cut(s) 66
MroXI GAANNNNTTC 2 cut(s) 114, 472
MscI TGGCCA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 677, 818
MspI CCGG 2 cut(s) 345, 681
MspR9I CCNGG 2 cut(s) 798, 846
MunI CAATTG 2 cut(s) 54, 180
MvaI CCWGG 2 cut(s) 798, 846
MvnI CGCG 1 cut(s) 677
MwoI GCNNNNNNNGC 8 cut(s) 185, 227, 260, 354, 521, 668, 677, 683
NcoI CCATGG 2 cut(s) 349, 401
NdeI CATATG 3 cut(s) 658, 807, 874
NdeII GATC 4 cut(s) 69, 365, 572, 812
NlaIV GGNNCC 5 cut(s) 117, 685, 779, 814, 851
NsiI ATGCAT 1 cut(s) 66
PagI TCATGA 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 81
PdmI GAANNNNTTC 2 cut(s) 114, 472
PfeI GAWTC 2 cut(s) 80, 397
PflMI CCANNNNNTGG 2 cut(s) 18, 66
PkrI GCNGC 6 cut(s) 217, 220, 256, 673, 676, 679
PshAI GACNNNNGTC 1 cut(s) 709
Psp6I CCWGG 2 cut(s) 796, 844
PspGI CCWGG 2 cut(s) 796, 844
PspN4I GGNNCC 5 cut(s) 117, 685, 779, 814, 851
PspPI GGNCC 1 cut(s) 704
PsuI RGATCY 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 312
SacII CCGCGG 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 81
SatI GCNGC 6 cut(s) 216, 219, 255, 672, 675, 678
Sau3AI GATC 4 cut(s) 69, 365, 572, 812
Sau96I GGNCC 1 cut(s) 704
ScrFI CCNGG 2 cut(s) 798, 846
SduI GDGCHC 5 cut(s) 730, 769, 780, 827, 852
SfaNI GCATC 2 cut(s) 588, 811
Sfr303I CCGCGG 1 cut(s) 678
SgrBI CCGCGG 1 cut(s) 678
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 6 cut(s) 54, 110, 180, 298, 446, 633
SsiI CCGC 5 cut(s) 541, 672, 675, 677, 816
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 796, 844
StyI CCWWGG 3 cut(s) 327, 349, 401
TaaI ACNGT 1 cut(s) 711
TaiI ACGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 72
TasI AATT 6 cut(s) 54, 110, 180, 298, 446, 633
TauI GCSGC 3 cut(s) 674, 677, 680
TfiI GAWTC 2 cut(s) 80, 397
TscAI CASTG 4 cut(s) 19, 98, 256, 601
TseI GCWGC 3 cut(s) 215, 218, 254
TspDTI ATGAA 3 cut(s) 90, 526, 569
TspRI CASTG 4 cut(s) 19, 98, 256, 601
Van91I CCANNNNNTGG 2 cut(s) 18, 66
VpaK11BI GGWCC 1 cut(s) 704
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 2 cut(s) 114, 472
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.