Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Forward (+)

18198227 .. 18199168

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAGAGCAATCCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAAAGAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGAAATGTTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGGTTACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCTATAGCCGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTTAGAATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAGTGTGTCATTTGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGCCACCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCAAAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGATCAAGTGGCAGCAACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACCTGAAGGAAGAGTAAACATTTTAAGAGAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

24.79

Weight (kDa)

8.24

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	135 - 178	1.1e-13	Ring finger domain
zf-RING_11	PF17123	135 - 164	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	135 - 177	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	149 - 178	2.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 309
AcuI	CTGAAG	3 cut(s)	12, 559, 666
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	290, 395
AgsI	TTSAA	4 cut(s)	35, 264, 300, 506
AluBI	AGCT	5 cut(s)	20, 79, 341, 584, 678
AluI	AGCT	5 cut(s)	20, 79, 341, 584, 678
Alw26I	GTCTC	2 cut(s)	73, 542
AlwNI	CAGNNNCTG	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	5, 79, 596, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	363, 449, 581
AvaI	CYCGRG	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	66, 608
BccI	CCATC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	73, 542
BfaI	CTAG	2 cut(s)	72, 679
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	4 cut(s)	6, 80, 597, 676
BlsI	GCNGC	4 cut(s)	7, 81, 598, 677
Bme1390I	CCNGG	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	476, 642
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	171, 216, 441
BmuI	ACTGGG	1 cut(s)	350
BoxI	GACNNNNGTC	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	55, 220, 389, 469
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 395
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	4 cut(s)	55, 220, 389, 469
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	290, 395
BseMII	CTCAG	4 cut(s)	178, 204, 270, 366
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	129, 624
BseXI	GCAGC	2 cut(s)	66, 608
BsgI	GTGCAG	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	291, 389, 435
BslI	CCNNNNNNNGG	2 cut(s)	290, 395
BsmAI	GTCTC	2 cut(s)	73, 542
BsmI	GAATGC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	273, 561, 586
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	2 cut(s)	60, 309
BspCNI	CTCAG	4 cut(s)	177, 203, 271, 367
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	476, 642
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	4 cut(s)	55, 220, 389, 469
BssMI	GATC	3 cut(s)	273, 561, 586
BssT1I	CCWWGG	2 cut(s)	55, 469
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	396, 646
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	7 cut(s)	164, 190, 279, 344, 375, 459, 565
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	3 cut(s)	276, 564, 589
BstMAI	GTCTC	2 cut(s)	73, 542
BstMBI	GATC	3 cut(s)	273, 561, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	555
BstPAI	GACNNNNGTC	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	66, 608
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	172, 535
Cac8I	GCNNGC	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	537
CciI	TCATGA	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	258
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	6 cut(s)	152, 271, 306, 470, 479, 552
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	7 cut(s)	164, 190, 279, 344, 375, 459, 565
DpnI	GATC	3 cut(s)	275, 563, 588
DpnII	GATC	3 cut(s)	273, 561, 586
Eam1104I	CTCTTC	2 cut(s)	396, 646
EarI	CTCTTC	2 cut(s)	396, 646
Eco130I	CCWWGG	2 cut(s)	55, 469
Eco57I	CTGAAG	3 cut(s)	12, 559, 666
Eco88I	CYCGRG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	55, 469
ErhI	CCWWGG	2 cut(s)	55, 469
FaeI	CATG	6 cut(s)	155, 274, 309, 473, 482, 555
FaiI	YATR	9 cut(s)	146, 153, 272, 287, 307, 471, 480, 491, 553
FatI	CATG	6 cut(s)	151, 270, 305, 469, 478, 551
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	6, 80, 597, 676
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	4 cut(s)	6, 80, 597, 676
FspBI	CTAG	2 cut(s)	72, 679
GluI	GCNGC	4 cut(s)	6, 80, 597, 676
HapII	CCGG	3 cut(s)	291, 389, 435
Hin1II	CATG	6 cut(s)	155, 274, 309, 473, 482, 555
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	3 cut(s)	291, 389, 435
HphI	GGTGA	3 cut(s)	363, 449, 581
Hpy166II	GTNNAC	2 cut(s)	440, 658
Hpy188I	TCNGA	4 cut(s)	180, 254, 280, 424
Hpy188III	TCNNGA	4 cut(s)	72, 271, 625, 638
Hpy8I	GTNNAC	2 cut(s)	440, 658
HpyAV	CCTTC	2 cut(s)	49, 641
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	7 cut(s)	8, 88, 125, 131, 248, 489, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	7 cut(s)	164, 190, 279, 344, 375, 459, 565
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	6 cut(s)	155, 274, 309, 473, 482, 555
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	273, 561, 586
LmnI	GCTCC	1 cut(s)	637
LpnPI	CCDG	9 cut(s)	304, 369, 387, 402, 448, 527, 610, 623, 657
Lsp1109I	GCAGC	2 cut(s)	66, 608
LweI	GCATC	3 cut(s)	171, 216, 441
MaeI	CTAG	2 cut(s)	72, 679
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	3 cut(s)	225, 365, 569
MalI	GATC	3 cut(s)	275, 563, 588
MboI	GATC	3 cut(s)	273, 561, 586
MboII	GAAGA	4 cut(s)	15, 18, 413, 663
MflI	RGATCY	1 cut(s)	561
MluCI	AATT	2 cut(s)	14, 618
MnlI	CCTC	5 cut(s)	150, 173, 206, 230, 645
MseI	TTAA	1 cut(s)	665
MspI	CCGG	3 cut(s)	291, 389, 435
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	273, 561, 586
NlaIII	CATG	6 cut(s)	155, 274, 309, 473, 482, 555
NlaIV	GGNNCC	2 cut(s)	476, 642
NmuCI	GTSAC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	555
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	7, 81, 598, 677
PshAI	GACNNNNGTC	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	476, 642
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	537
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	4 cut(s)	6, 80, 597, 676
Sau3AI	GATC	3 cut(s)	273, 561, 586
ScrFI	CCNGG	1 cut(s)	390
SfaNI	GCATC	3 cut(s)	171, 216, 441
SfcI	CTRYAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	14, 618
SsiI	CCGC	2 cut(s)	60, 309
SspMI	CTAG	2 cut(s)	72, 679
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	55, 469
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	259
TasI	AATT	2 cut(s)	14, 618
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	2 cut(s)	172, 542
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	4 cut(s)	5, 79, 596, 675
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	27, 259, 303, 395
TspRI	CASTG	2 cut(s)	172, 542
Tth111I	GACNNNGTC	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	1 cut(s)	555
XspI	CTAG	2 cut(s)	72, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.