Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Reverse (-)

32426971 .. 32428945

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG283300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCCTGCTTCTGCTTCTGCTTCTCACCAACTTCACGATCTTCTTGGGGACTTCTACTCCAGGAGACTACTCCTCCACAACCCACTTTACCCTCCACCCATCTCTCCATCTTCAACCTCGCACGACACATCTTCGTCCTCTCCTGATCAGTACCCCGGAGACAACAGCTTCGATGCTAATGTGGTCATGGTGCTCTCTGTCCTCCTCTGCGCCCTAATTTGCTCTTTGGGGCTCAACTCCATCATAAAGTGCGCTCTGAGGTGCTCGAGCTTCGTGTCCTCGGAGTCTTCTTCTTCCTCAAGAGACAACTTGGCGAGGCTGGCCAACACCGGAGTCAAGAAGAAAGCTCTCAAGACTTTTACGACGGTGAATTACTCAGCTGAGCTTAAGCTTCCCGGGTTGGACAGTGAGTGCATAATTTGTTTGTCGGAGTTTACAACCGGCGAGCGCGTGCGGCTACTTCCCAAGTGTAACCATGGATTCCATGTGAGGTGCATCGATAAGTGGCTGAGCTCTCACTCTTCGTGCCCTAAATGCCGGCACAGCTTGATCGAGACGTGTCAGAAGATCGTTGGCTTCAGCCAGGCAGATAGCTCGTCGGAGACAACTCGTGCTCTTCCTGTGCAGGAAACTACAGTAAGCATTGCAGCACTTGAACCTGAAGGGTTTATTCGTAATTATAGGGGAATTATTAGCCAAGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

25.5

Weight (kDa)

8.01

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	135 - 180	3.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	137 - 180	2.5e-14	Ring finger domain
zf-RING_11	PF17123	137 - 166	2e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	137 - 179	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	138 - 179	3.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	450
AciI	CCGC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	562, 681
AfaI	GTAC	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	114, 656
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	59, 582
Alw21I	GWGCWC	4 cut(s)	195, 266, 515, 616
Alw26I	GTCTC	5 cut(s)	58, 153, 297, 548, 596
Ama87I	CYCGRG	2 cut(s)	265, 395
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	3 cut(s)	212, 254, 450
AsuC2I	CCSGG	3 cut(s)	156, 396, 397
AsuHPI	GGTGA	2 cut(s)	17, 379
AsuNHI	GCTAGC	1 cut(s)	701
AvaI	CYCGRG	2 cut(s)	265, 395
BaeGI	GKGCMC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	234, 515
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	4 cut(s)	195, 266, 515, 616
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	3 cut(s)	107, 115, 248
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BciT130I	CCWGG	2 cut(s)	61, 584
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	3 cut(s)	156, 396, 397
BcoDI	GTCTC	5 cut(s)	58, 153, 297, 548, 596
BfaI	CTAG	2 cut(s)	702, 706
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	455, 648
BlpI	GCTNAGC	2 cut(s)	381, 509
BlsI	GCNGC	2 cut(s)	456, 649
Bme1390I	CCNGG	5 cut(s)	61, 156, 396, 397, 584
BmeT110I	CYCGRG	2 cut(s)	265, 395
BmgBI	CACGTC	1 cut(s)	558
BmrFI	CCNGG	5 cut(s)	61, 156, 396, 397, 584
BmsI	GCATC	2 cut(s)	163, 504
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	43
Bpu1102I	GCTNAGC	2 cut(s)	381, 509
BpuEI	CTTGAG	2 cut(s)	283, 335
BpuMI	CCSGG	3 cut(s)	156, 396, 397
Bsa29I	ATCGAT	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	154, 279, 395, 475
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 57, 71, 87
Bse118I	RCCGGY	2 cut(s)	440, 537
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	61, 584
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	154, 279, 395, 475
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	4 cut(s)	248, 372, 390, 500
BseRI	GAGGAG	2 cut(s)	62, 194
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	4 cut(s)	195, 266, 515, 616
BsiHKCI	CYCGRG	2 cut(s)	265, 395
BsiSI	CCGG	5 cut(s)	156, 330, 396, 441, 538
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	5 cut(s)	58, 153, 297, 548, 596
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	2 cut(s)	265, 395
Bsp1286I	GDGCHC	6 cut(s)	195, 234, 266, 515, 530, 616
Bsp143I	GATC	4 cut(s)	37, 145, 549, 567
Bsp1720I	GCTNAGC	2 cut(s)	381, 509
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	4 cut(s)	249, 373, 389, 501
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	450
BspOI	GCTAGC	1 cut(s)	705
BspQI	GCTCTTC	1 cut(s)	621
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	2 cut(s)	440, 537
BssAI	RCCGGY	2 cut(s)	440, 537
BssECI	CCNNGG	4 cut(s)	154, 279, 395, 475
BssMI	GATC	4 cut(s)	37, 145, 549, 567
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	475
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	61, 584
Bst4CI	ACNGT	3 cut(s)	367, 407, 637
Bst6I	CTCTTC	2 cut(s)	526, 621
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	6 cut(s)	6, 321, 446, 452, 539, 703
BstDEI	CTNAG	4 cut(s)	257, 376, 381, 509
BstDSI	CCRYGG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	3 cut(s)	212, 254, 450
BstKTI	GATC	4 cut(s)	40, 148, 552, 570
BstMAI	GTCTC	5 cut(s)	58, 153, 297, 548, 596
BstMBI	GATC	4 cut(s)	37, 145, 549, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 454, 534, 543, 702
BstNI	CCWGG	2 cut(s)	61, 584
BstSCI	CCNGG	5 cut(s)	59, 154, 394, 395, 582
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	475
BtrI	CACGTC	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	6 cut(s)	6, 321, 446, 452, 539, 703
CfoI	GCGC	3 cut(s)	212, 254, 450
Cfr10I	RCCGGY	2 cut(s)	440, 537
Cfr9I	CCCGGG	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	187, 476, 485
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	4 cut(s)	257, 376, 381, 509
DpnI	GATC	4 cut(s)	39, 147, 551, 569
DpnII	GATC	4 cut(s)	37, 145, 549, 567
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	526, 621
EarI	CTCTTC	2 cut(s)	526, 621
Ecl136II	GAGCTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	475
Eco24I	GRGCYC	2 cut(s)	234, 515
Eco53kI	GAGCTC	1 cut(s)	513
Eco57I	CTGAAG	2 cut(s)	562, 681
Eco88I	CYCGRG	2 cut(s)	265, 395
EcoICRI	GAGCTC	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	59, 582
EcoT14I	CCWWGG	1 cut(s)	475
EcoT38I	GRGCYC	2 cut(s)	234, 515
ErhI	CCWWGG	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	3 cut(s)	190, 479, 488
FaiI	YATR	6 cut(s)	188, 245, 416, 477, 486, 681
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	186, 475, 484
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	455, 648
FriOI	GRGCYC	2 cut(s)	234, 515
Fsp4HI	GCNGC	2 cut(s)	455, 648
FspBI	CTAG	2 cut(s)	702, 706
GlaI	GCGC	3 cut(s)	211, 253, 449
GluI	GCNGC	2 cut(s)	455, 648
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	5 cut(s)	156, 330, 396, 441, 538
HhaI	GCGC	3 cut(s)	212, 254, 450
Hin1II	CATG	3 cut(s)	190, 479, 488
Hin6I	GCGC	3 cut(s)	210, 252, 448
HinP1I	GCGC	3 cut(s)	210, 252, 448
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	284, 333, 480
HpaII	CCGG	5 cut(s)	156, 330, 396, 441, 538
HphI	GGTGA	2 cut(s)	17, 379
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	5 cut(s)	258, 283, 430, 564, 601
Hpy188III	TCNNGA	6 cut(s)	35, 143, 300, 337, 352, 553
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	2 cut(s)	367, 601
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	3 cut(s)	367, 407, 637
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	4 cut(s)	414, 495, 625, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 454, 534, 543, 702
HpyF3I	CTNAG	4 cut(s)	257, 376, 381, 509
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	190, 479, 488
HspAI	GCGC	3 cut(s)	210, 252, 448
KroI	GCCGGC	1 cut(s)	537
KroNI	GCCGGC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	37, 145, 549, 567
LguI	GCTCTTC	1 cut(s)	621
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	2 cut(s)	163, 504
MaeI	CTAG	2 cut(s)	702, 706
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	39, 147, 551, 569
MboI	GATC	4 cut(s)	37, 145, 549, 567
MhlI	GDGCHC	6 cut(s)	195, 234, 266, 515, 530, 616
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	5 cut(s)	216, 370, 417, 676, 687
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	293, 342
MmeI	TCCRAC	3 cut(s)	381, 408, 579
Mox20I	TGGCCA	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	5 cut(s)	156, 330, 396, 441, 538
MspR9I	CCNGG	5 cut(s)	61, 156, 396, 397, 584
MvaI	CCWGG	2 cut(s)	61, 584
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	5 cut(s)	320, 454, 534, 543, 702
NaeI	GCCGGC	1 cut(s)	539
NciI	CCSGG	3 cut(s)	156, 396, 397
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	37, 145, 549, 567
NgoMIV	GCCGGC	1 cut(s)	537
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	3 cut(s)	190, 479, 488
PaeR7I	CTCGAG	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	621
PdiI	GCCGGC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	480
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	456, 649
PleI	GAGTC	2 cut(s)	292, 341
PpsI	GAGTC	2 cut(s)	292, 341
Psp124BI	GAGCTC	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	59, 582
PspGI	CCWGG	2 cut(s)	59, 582
PspXI	VCTCGAGB	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	455, 648
Sau3AI	GATC	4 cut(s)	37, 145, 549, 567
SchI	GAGTC	2 cut(s)	293, 342
ScrFI	CCNGG	5 cut(s)	61, 156, 396, 397, 584
SduI	GDGCHC	6 cut(s)	195, 234, 266, 515, 530, 616
SfaNI	GCATC	2 cut(s)	163, 504
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmaI	CCCGGG	1 cut(s)	397
SmlI	CTYRAG	4 cut(s)	265, 298, 350, 386
SmoI	CTYRAG	4 cut(s)	265, 298, 350, 386
Sse9I	AATT	5 cut(s)	216, 370, 417, 676, 687
SsiI	CCGC	1 cut(s)	454
SspMI	CTAG	2 cut(s)	702, 706
SstI	GAGCTC	1 cut(s)	515
StyD4I	CCNGG	5 cut(s)	59, 154, 394, 395, 582
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	367, 407, 637
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	4 cut(s)	171, 266, 498, 552
TasI	AATT	5 cut(s)	216, 370, 417, 676, 687
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	1 cut(s)	647
TspMI	CCCGGG	1 cut(s)	395
TspRI	CASTG	1 cut(s)	412
Vha464I	CTTAAG	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	265
XmaI	CCCGGG	1 cut(s)	395
XspI	CTAG	2 cut(s)	702, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.