Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Forward (+)

18209194 .. 18210177

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGCACTACCATTTCCATTTCCATTTCCACCATAAAACCAACTGAGATCTTTCAAGAAATTCTTGGAAGTTCTTACTCAAGAAAATTACTATTTCATACCCATGATCAATCACCAACTCCAGCACCATCCCCATATGTAGGCGATAACAACTTTGATGCAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCACTTGTTTGCTCACTTGGACTCAATTCTATAATAAGATGTGCCTTGAGGTGCTCCAATTTAGTACCATCTGAAGCTGGTGGTGACAACTATCCTGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTTGAAGAGTTTCCAGACAGTAAGTTACTCTACTGAACTAAATCTGCCTGGCTTAGATACCGAGTGTGCTATCTGTCTCTCGGAATTTGTAGCCGAGGAACGTGTGAAGCTGTTGCCGACATGCCACCATGGATTCCATGTCCGTTGTATAGACAAGTGGCTTAGTTCACACTCGTCCTGTCCCACCTGCAGGCACTGCCTCATCCAGACATGCGAGAAGATTGCCGACTGCAGCCAAACAAGCTCGTTAAACTCTACTCAACCACCACAAGACAGCATCATTCTCCAAATAGCACCACTAGAACCGGAAAGATGGATACGCTGGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

219

Amino Acids

24.29

Weight (kDa)

7.0

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	130 - 173	3.7e-14	Ring finger domain
zf-RING_11	PF17123	130 - 159	8.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	130 - 172	6.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	131 - 172	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	131 - 173	4.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	521
AcsI	RAATTY	2 cut(s)	60, 410
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	140, 516
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	56, 331
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	3 cut(s)	272, 436, 570
AluI	AGCT	3 cut(s)	272, 436, 570
Alw21I	GWGCWC	3 cut(s)	8, 199, 251
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	2 cut(s)	4, 195
AlwNI	CAGNNNCTG	1 cut(s)	522
ApaLI	GTGCAC	2 cut(s)	4, 195
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	2 cut(s)	60, 410
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	105, 290
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	2 cut(s)	8, 199
BaeI	ACNNNNGTAYC	1 cut(s)	635
Bbv12I	GWGCWC	3 cut(s)	8, 199, 251
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	3 cut(s)	136, 271, 633
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	636
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	514, 556
BfuAI	ACCTGC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	636
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	148, 612
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	64, 262
BsaJI	CCNNGG	2 cut(s)	420, 454
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 516
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	420, 454
BseGI	GGATG	2 cut(s)	128, 528
BseLI	CCNNNNNNNGG	2 cut(s)	140, 516
BseMII	CTCAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	8, 199
BseXI	GCAGC	1 cut(s)	570
BsiHKAI	GWGCWC	3 cut(s)	8, 199, 251
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	140, 516
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	8, 199, 251
Bsp143I	GATC	2 cut(s)	48, 106
Bsp19I	CCATGG	1 cut(s)	454
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	2 cut(s)	518, 560
BspMI	ACCTGC	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	420, 454
BssMI	GATC	2 cut(s)	48, 106
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	45, 379, 488
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	128, 528
BstKTI	GATC	2 cut(s)	51, 109
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	48, 106
BstMWI	GCNNNNNNNGC	2 cut(s)	522, 567
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	2 cut(s)	450, 540
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	2 cut(s)	514, 556
BstSLI	GKGCMC	2 cut(s)	8, 199
BstV1I	GCAGC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	128, 528
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	1 cut(s)	518
CaiI	CAGNNNCTG	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	5 cut(s)	104, 447, 455, 464, 537
CviJI	RGCY	8 cut(s)	272, 326, 378, 419, 436, 487, 561, 570
CviKI_1	RGCY	8 cut(s)	272, 326, 378, 419, 436, 487, 561, 570
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	45, 379, 488
DpnI	GATC	2 cut(s)	50, 108
DpnII	GATC	2 cut(s)	48, 106
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	107, 450, 458, 467, 540
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	5 cut(s)	103, 446, 454, 463, 536
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	2 cut(s)	115, 515
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	105
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	5 cut(s)	107, 450, 458, 467, 540
HinfI	GANTC	3 cut(s)	216, 312, 459
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	2 cut(s)	105, 290
Hpy166II	GTNNAC	3 cut(s)	6, 197, 494
Hpy188I	TCNGA	2 cut(s)	268, 409
Hpy188III	TCNNGA	4 cut(s)	56, 81, 340, 532
Hpy8I	GTNNAC	3 cut(s)	6, 197, 494
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	6, 161, 197, 516, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	522, 567
HpyF3I	CTNAG	3 cut(s)	45, 379, 488
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	5 cut(s)	107, 450, 458, 467, 540
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	48, 106
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	2 cut(s)	148, 612
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	278, 350
MalI	GATC	2 cut(s)	50, 108
MboI	GATC	2 cut(s)	48, 106
MboII	GAAGA	2 cut(s)	343, 556
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	3 cut(s)	8, 199, 251
MluCI	AATT	5 cut(s)	60, 86, 220, 253, 410
MlyI	GAGTC	2 cut(s)	210, 321
MnlI	CCTC	4 cut(s)	197, 237, 415, 536
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	522, 567
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	48, 106
NlaIII	CATG	5 cut(s)	107, 450, 458, 467, 540
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	2 cut(s)	450, 540
PaqCI	CACCTGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	560
PleI	GAGTC	2 cut(s)	210, 320
PpsI	GAGTC	2 cut(s)	210, 320
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	2 cut(s)	518, 560
PstNI	CAGNNNCTG	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	2 cut(s)	48, 106
Sau96I	GGNCC	1 cut(s)	175
SbfI	CCTGCAGG	1 cut(s)	518
SchI	GAGTC	2 cut(s)	210, 321
ScrFI	CCNGG	1 cut(s)	375
SdaI	CCTGCAGG	1 cut(s)	518
SduI	GDGCHC	3 cut(s)	8, 199, 251
SetI	ASST	7 cut(s)	248, 274, 430, 438, 515, 572, 659
SfaNI	GCATC	2 cut(s)	148, 612
SfcI	CTRYAG	2 cut(s)	514, 556
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	79, 241
SmoI	CTYRAG	2 cut(s)	79, 241
Sse8387I	CCTGCAGG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	60, 86, 220, 253, 410
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	430
TasI	AATT	5 cut(s)	60, 86, 220, 253, 410
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	527
VneI	GTGCAC	2 cut(s)	4, 195
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	60, 410
XceI	RCATGY	2 cut(s)	450, 540
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.