Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Reverse (-)

15327967 .. 15328674

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCCTGCTTCTGCTTCTGCTTTTGCTTCTCACCAACTTGACCATCTTGTTGGGGACTTCTACTCCAGAAGACTACTCCTCCACAACCCTCTTTACCCTCCACCCATCTCTCCTTCTTCAACCTCGCACGACGCATCTTCTTCTTCTCCTGATCAGTACCCCGGTGACAACAGCTTCGATGCTAATGTGGTCATGGTGCTCTCAGTCCTCCTCTGCGCTCTGATTTGCTCTTTGGGGCTCAACTCCATCATAAAGTGCGCTCTGAGATGCTCGAGCTTCGTGGCCGCTGAGTCCTCTTCTTCCTCCAACAACTCGGCGAGGCTGGCCAACACCGGAGTCAAGAAGAAAGCCCTCAAGACTTTTCCGACCATTAGCTACTCAGCTGAGATTAAGCTTCCCGGGTTGGACAGTGAGTGCATGATTTGTTTGTCGGAGTTTACAACCGGCGAGCGCGTGAGGCTACTTCCCAAGTGTAACCATGGATTCCATGTGAGGTGCATCGATAAGTGGCTGAGCTCTCACTCTTCGTGCCCTAAATGCCGGCAGAGCTTGATCGAGACATGTCAGAAGATCGTTGGCTTCAGCCAGGCGGCCGGTAGCTCGTCGGAGACGACGACTCGTGCTCTTCCTGTGCAAGAAACTATAGTAAGCATTGCAGCACTTCAACCTGAAGGGTTTATTCGTAATTATAGGGGAATTATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

236

Amino Acids

25.29

Weight (kDa)

8.49

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	136 - 181	6.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	138 - 181	2.3e-14	Ring finger domain
zf-RING_11	PF17123	138 - 167	6.6e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	138 - 180	1.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	139 - 180	6.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	285, 590
AcoI	YGGCCR	3 cut(s)	282, 324, 591
AcuI	CTGAAG	2 cut(s)	565, 690
AfaI	GTAC	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	120, 665
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	9 cut(s)	174, 276, 375, 383, 394, 516, 549, 600, 705
AluI	AGCT	9 cut(s)	174, 276, 375, 383, 394, 516, 549, 600, 705
Alw21I	GWGCWC	3 cut(s)	201, 518, 625
Alw26I	GTCTC	2 cut(s)	551, 602
Ama87I	CYCGRG	2 cut(s)	271, 398
AoxI	GGCC	3 cut(s)	282, 324, 591
ApeKI	GCWGC	1 cut(s)	656
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspLEI	GCGC	3 cut(s)	218, 260, 453
AsuC2I	CCSGG	3 cut(s)	162, 399, 400
AsuHPI	GGTGA	2 cut(s)	23, 176
AvaI	CYCGRG	2 cut(s)	271, 398
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	240, 518
BauI	CACGAG	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	3 cut(s)	201, 518, 625
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	3 cut(s)	51, 113, 254
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	3 cut(s)	162, 399, 400
BcoDI	GTCTC	2 cut(s)	551, 602
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	3 cut(s)	285, 591, 657
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	3 cut(s)	286, 592, 658
Bme1390I	CCNGG	4 cut(s)	162, 399, 400, 587
BmeT110I	CYCGRG	2 cut(s)	271, 398
BmrFI	CCNGG	4 cut(s)	162, 399, 400, 587
BmsI	GCATC	4 cut(s)	143, 169, 257, 507
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	49
Bpu1102I	GCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	162, 399, 400
Bsa29I	ATCGAT	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	160, 398, 478
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 63, 77, 93
Bse118I	RCCGGY	3 cut(s)	443, 540, 593
Bse3DI	GCAATG	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	160, 398, 478
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	6 cut(s)	216, 254, 279, 375, 393, 503
BseRI	GAGGAG	2 cut(s)	68, 200
BseSI	GKGCMC	1 cut(s)	533
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	284, 326, 593
BshVI	ATCGAT	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	3 cut(s)	201, 518, 625
BsiHKCI	CYCGRG	2 cut(s)	271, 398
BsiSI	CCGG	6 cut(s)	162, 333, 399, 444, 541, 594
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	551, 602
BsmBI	CGTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	284, 326, 593
BsoBI	CYCGRG	2 cut(s)	271, 398
Bsp1286I	GDGCHC	5 cut(s)	201, 240, 518, 533, 625
Bsp143I	GATC	3 cut(s)	151, 552, 570
Bsp1720I	GCTNAGC	1 cut(s)	512
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	2 cut(s)	285, 590
BspANI	GGCC	3 cut(s)	284, 326, 593
BspCNI	CTCAG	6 cut(s)	215, 255, 280, 376, 392, 504
BspDI	ATCGAT	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	3 cut(s)	443, 540, 593
BssAI	RCCGGY	3 cut(s)	443, 540, 593
BssECI	CCNNGG	3 cut(s)	160, 398, 478
BssMI	GATC	3 cut(s)	151, 552, 570
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	3 cut(s)	301, 529, 630
BstC8I	GCNNGC	4 cut(s)	6, 324, 449, 542
BstDEI	CTNAG	6 cut(s)	202, 263, 288, 379, 384, 512
BstDSI	CCRYGG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	3 cut(s)	218, 260, 453
BstKTI	GATC	3 cut(s)	154, 555, 573
BstMAI	GTCTC	2 cut(s)	551, 602
BstMBI	GATC	3 cut(s)	151, 552, 570
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 457, 537, 546
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	4 cut(s)	160, 397, 398, 585
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstZI	CGGCCG	1 cut(s)	591
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	284, 326, 593
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	6, 324, 449, 542
CfoI	GCGC	3 cut(s)	218, 260, 453
Cfr10I	RCCGGY	3 cut(s)	443, 540, 593
Cfr9I	CCCGGG	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	501
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	5 cut(s)	193, 418, 479, 488, 561
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	6 cut(s)	202, 263, 288, 379, 384, 512
DpnI	GATC	3 cut(s)	153, 554, 572
DpnII	GATC	3 cut(s)	151, 552, 570
EaeI	YGGCCR	3 cut(s)	282, 324, 591
EagI	CGGCCG	1 cut(s)	591
Eam1104I	CTCTTC	3 cut(s)	301, 529, 630
EarI	CTCTTC	3 cut(s)	301, 529, 630
Ecl136II	GAGCTC	1 cut(s)	516
EclXI	CGGCCG	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	240, 518
Eco52I	CGGCCG	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	565, 690
Eco88I	CYCGRG	2 cut(s)	271, 398
EcoICRI	GAGCTC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	240, 518
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	5 cut(s)	196, 421, 482, 491, 564
FaiI	YATR	8 cut(s)	194, 251, 419, 480, 489, 562, 644, 690
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	5 cut(s)	192, 417, 478, 487, 560
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	285, 591, 657
FriOI	GRGCYC	2 cut(s)	240, 518
Fsp4HI	GCNGC	3 cut(s)	285, 591, 657
GlaI	GCGC	3 cut(s)	217, 259, 452
GluI	GCNGC	3 cut(s)	285, 591, 657
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	284, 326, 593
HapII	CCGG	6 cut(s)	162, 333, 399, 444, 541, 594
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	3 cut(s)	218, 260, 453
Hin1II	CATG	5 cut(s)	196, 421, 482, 491, 564
Hin6I	GCGC	3 cut(s)	216, 258, 451
HinP1I	GCGC	3 cut(s)	216, 258, 451
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	4 cut(s)	290, 336, 483, 616
HpaII	CCGG	6 cut(s)	162, 333, 399, 444, 541, 594
HphI	GGTGA	2 cut(s)	23, 176
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	6 cut(s)	222, 264, 366, 433, 567, 607
Hpy188III	TCNNGA	5 cut(s)	66, 149, 340, 355, 556
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	3 cut(s)	134, 607, 616
HpyAV	CCTTC	2 cut(s)	123, 665
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	417, 498, 634, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 457, 537, 546
HpyF3I	CTNAG	6 cut(s)	202, 263, 288, 379, 384, 512
Hsp92II	CATG	5 cut(s)	196, 421, 482, 491, 564
HspAI	GCGC	3 cut(s)	216, 258, 451
KroI	GCCGGC	1 cut(s)	540
KroNI	GCCGGC	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	151, 552, 570
LguI	GCTCTTC	1 cut(s)	630
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	4 cut(s)	143, 169, 257, 507
MaeIII	GTNAC	2 cut(s)	164, 473
MalI	GATC	3 cut(s)	153, 554, 572
MboI	GATC	3 cut(s)	151, 552, 570
MhlI	GDGCHC	5 cut(s)	201, 240, 518, 533, 625
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	2 cut(s)	685, 696
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	3 cut(s)	299, 345, 610
MmeI	TCCRAC	5 cut(s)	330, 384, 389, 411, 585
Mox20I	TGGCCA	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	287, 383
MspI	CCGG	6 cut(s)	162, 333, 399, 444, 541, 594
MspR9I	CCNGG	4 cut(s)	162, 399, 400, 587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	323, 457, 537, 546
NaeI	GCCGGC	1 cut(s)	542
NciI	CCSGG	3 cut(s)	162, 399, 400
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	3 cut(s)	151, 552, 570
NgoMIV	GCCGGC	1 cut(s)	540
NlaIII	CATG	5 cut(s)	196, 421, 482, 491, 564
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	564
PaeR7I	CTCGAG	1 cut(s)	271
PciI	ACATGT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	608, 611
PdiI	GCCGGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	286, 592, 658
PleI	GAGTC	3 cut(s)	298, 344, 610
PpsI	GAGTC	3 cut(s)	298, 344, 610
PscI	ACATGT	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	3 cut(s)	285, 591, 657
Sau3AI	GATC	3 cut(s)	151, 552, 570
SchI	GAGTC	3 cut(s)	299, 345, 610
ScrFI	CCNGG	4 cut(s)	162, 399, 400, 587
SduI	GDGCHC	5 cut(s)	201, 240, 518, 533, 625
SfaNI	GCATC	4 cut(s)	143, 169, 257, 507
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	271
SmaI	CCCGGG	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	271, 353
SmoI	CTYRAG	2 cut(s)	271, 353
Sse9I	AATT	2 cut(s)	685, 696
SsiI	CCGC	2 cut(s)	285, 590
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	4 cut(s)	160, 397, 398, 585
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	177, 272, 501, 555
TasI	AATT	2 cut(s)	685, 696
TauI	GCSGC	2 cut(s)	287, 593
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	164
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	1 cut(s)	415
XceI	RCATGY	1 cut(s)	564
XhoI	CTCGAG	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.